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Stowers CE, Wu C, Xu Z, Kumar S, Yam C, Son JB, Ma J, Tamir JI, Rauch GM, Yankeelov TE. Combining Biology-based and MRI Data-driven Modeling to Predict Response to Neoadjuvant Chemotherapy in Patients with Triple-Negative Breast Cancer. Radiol Artif Intell 2025;7:e240124. [PMID: 39503605 DOI: 10.1148/ryai.240124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2024]
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Levac B, Kumar S, Jalal A, Tamir JI. Accelerated motion correction with deep generative diffusion models. Magn Reson Med 2024;92:853-868. [PMID: 38688874 DOI: 10.1002/mrm.30082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Revised: 01/02/2024] [Accepted: 02/23/2024] [Indexed: 05/02/2024]
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Kumar S, Saber H, Charron O, Freeman L, Tamir JI. Correcting synthetic MRI contrast-weighted images using deep learning. Magn Reson Imaging 2024;106:43-54. [PMID: 38092082 DOI: 10.1016/j.mri.2023.11.015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Revised: 11/30/2023] [Accepted: 11/30/2023] [Indexed: 12/17/2023]
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Wang K, Doneva M, Meineke J, Amthor T, Karasan E, Tan F, Tamir JI, Yu SX, Lustig M. High-fidelity direct contrast synthesis from magnetic resonance fingerprinting. Magn Reson Med 2023;90:2116-2129. [PMID: 37332200 DOI: 10.1002/mrm.29766] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2023] [Revised: 05/03/2023] [Accepted: 05/31/2023] [Indexed: 06/20/2023]
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Stowers CE, Wu C, Kumar S, Lima EA, Zu X, Yam C, Son JB, Ma J, Tamir JI, Rauch GM, Yankeelov TE. Abstract 845: Developing MRI-based digital-twins via mathematical modeling and deep learning to predict the response of triple-negative breast cancer to neoadjuvant therapy. Cancer Res 2023. [DOI: 10.1158/1538-7445.am2023-845] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/07/2023]
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Slavkova KP, DiCarlo JC, Wadhwa V, Kumar S, Wu C, Virostko J, Yankeelov TE, Tamir JI. An untrained deep learning method for reconstructing dynamic MR images from accelerated model-based data. Magn Reson Med 2023;89:1617-1633. [PMID: 36468624 PMCID: PMC9892348 DOI: 10.1002/mrm.29547] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2022] [Revised: 11/09/2022] [Accepted: 11/15/2022] [Indexed: 12/09/2022]
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Wang K, Tamir JI, De Goyeneche A, Wollner U, Brada R, Yu SX, Lustig M. High fidelity deep learning‐based MRI reconstruction with instance‐wise discriminative feature matching loss. Magn Reson Med 2022;88:476-491. [DOI: 10.1002/mrm.29227] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2021] [Revised: 02/08/2022] [Accepted: 02/22/2022] [Indexed: 11/12/2022]
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Shimron E, Tamir JI, Wang K, Lustig M. Implicit data crimes: Machine learning bias arising from misuse of public data. Proc Natl Acad Sci U S A 2022;119:e2117203119. [PMID: 35312366 PMCID: PMC9060447 DOI: 10.1073/pnas.2117203119] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2021] [Accepted: 02/01/2022] [Indexed: 02/01/2023]  Open
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Arvinte M, Vishwanath S, Tewfik AH, Tamir JI. Deep J-Sense: Accelerated MRI Reconstruction via Unrolled Alternating Optimization. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION : MICCAI ... INTERNATIONAL CONFERENCE ON MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION 2021;12906:350-360. [PMID: 35059693 PMCID: PMC8767765 DOI: 10.1007/978-3-030-87231-1_34] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
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Pasumarthi S, Tamir JI, Christensen S, Zaharchuk G, Zhang T, Gong E. A generic deep learning model for reduced gadolinium dose in contrast-enhanced brain MRI. Magn Reson Med 2021;86:1687-1700. [PMID: 33914965 DOI: 10.1002/mrm.28808] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2021] [Revised: 03/23/2021] [Accepted: 03/25/2021] [Indexed: 01/17/2023]
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Gopalan K, Tamir JI, Arias AC, Lustig M. Quantitative anatomy mimicking slice phantoms. Magn Reson Med 2021;86:1159-1166. [PMID: 33738824 DOI: 10.1002/mrm.28740] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2020] [Revised: 01/26/2021] [Accepted: 01/29/2021] [Indexed: 11/07/2022]
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Tamir JI, Ong F, Anand S, Karasan E, Wang K, Lustig M. Computational MRI with Physics-based Constraints: Application to Multi-contrast and Quantitative Imaging. IEEE SIGNAL PROCESSING MAGAZINE 2020;37:94-104. [PMID: 33746469 PMCID: PMC7977016 DOI: 10.1109/msp.2019.2940062] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
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Tamir JI, Taviani V, Alley MT, Perkins B, Hart L, Obrien K, Wishah F, Sandberg JK, Anderson MJ, Turek JS, Willke TL, Lustig M, Vasanawala SS. Targeted rapid knee MRI exam using T2 shuffling. J Magn Reson Imaging 2019;49:e195-e204. [PMID: 30637847 PMCID: PMC6551292 DOI: 10.1002/jmri.26600] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2018] [Revised: 11/18/2018] [Accepted: 11/19/2018] [Indexed: 12/22/2022]  Open
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Chen F, Taviani V, Malkiel I, Cheng JY, Tamir JI, Shaikh J, Chang ST, Hardy CJ, Pauly JM, Vasanawala SS. Variable-Density Single-Shot Fast Spin-Echo MRI with Deep Learning Reconstruction by Using Variational Networks. Radiology 2018;289:366-373. [PMID: 30040039 PMCID: PMC6209075 DOI: 10.1148/radiol.2018180445] [Citation(s) in RCA: 71] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2018] [Revised: 05/08/2018] [Accepted: 05/15/2018] [Indexed: 02/01/2023]
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Chen F, Taviani V, Tamir JI, Cheng JY, Zhang T, Song Q, Hargreaves BA, Pauly JM, Vasanawala SS. Self-Calibrating Wave-Encoded Variable-Density Single-Shot Fast Spin Echo Imaging. J Magn Reson Imaging 2017;47:954-966. [PMID: 28906567 DOI: 10.1002/jmri.25853] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2017] [Accepted: 08/24/2017] [Indexed: 11/10/2022]  Open
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Tamir JI, Uecker M, Chen W, Lai P, Alley MT, Vasanawala SS, Lustig M. T2 shuffling: Sharp, multicontrast, volumetric fast spin-echo imaging. Magn Reson Med 2017;77:180-195. [PMID: 26786745 PMCID: PMC4990508 DOI: 10.1002/mrm.26102] [Citation(s) in RCA: 131] [Impact Index Per Article: 16.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2015] [Revised: 11/21/2015] [Accepted: 12/06/2015] [Indexed: 12/22/2022]
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Bao S, Tamir JI, Young JL, Tariq U, Uecker M, Lai P, Chen W, Lustig M, Vasanawala SS. Fast comprehensive single-sequence four-dimensional pediatric knee MRI with T2 shuffling. J Magn Reson Imaging 2016;45:1700-1711. [PMID: 27726251 DOI: 10.1002/jmri.25508] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2016] [Accepted: 09/19/2016] [Indexed: 12/22/2022]  Open
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Cheng JY, Hanneman K, Zhang T, Alley MT, Lai P, Tamir JI, Uecker M, Pauly JM, Lustig M, Vasanawala SS. Comprehensive motion-compensated highly accelerated 4D flow MRI with ferumoxytol enhancement for pediatric congenital heart disease. J Magn Reson Imaging 2015;43:1355-68. [PMID: 26646061 DOI: 10.1002/jmri.25106] [Citation(s) in RCA: 81] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2015] [Accepted: 11/14/2015] [Indexed: 11/06/2022]  Open
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