Controlling molecular self-organization: formation of nanometer-scale spheres and tubules

Amphiphilic polyhedron-shaped p-sulfonatocalix[4]arene building blocks, which have been previously shown to assemble into bilayers in an antiparallel fashion, have been assembled in a parallel alignment into spherical and helical tubular structures by the addition of pyridine N-oxide and lanthanide ions. Crystallographic studies revealed how metal ion coordination and substrate recognition direct the formation of these supramolecular assemblies. The addition of greater amounts of pyridine N-oxide changed the curvature of the assembling surface and resulted in the formation of extended tubules.

Guest transport in a nonporous organic solid via dynamic van der Waals cooperativity

A well-known organic host compound undergoes single-crystal-to-single-crystal phase transitions upon guest uptake and release. Despite a lack of porosity of the material, guest transport through the solid occurs readily until a thermodynamically stable structure is achieved. In order to actively facilitate this dynamic process, the host molecules undergo significant positional and/or orientational rearrangement. This transformation of the host lattice is triggered by weak van der Waals interactions between the molecular components. In order for the material to maintain its macroscopic integrity, extensive cooperativity must exist between the molecules throughout the crystal, such that rearrangement can occur in a well-orchestrated fashion. We demonstrate here that even weak dispersive forces can exert a profound influence over solid-state dynamics.

Engineering void space in organic van der Waals crystals: calixarenes lead the way

Seemingly non-porous organic solids have the ability for guest transport and have also been shown to absorb gases, including hydrogen, methane and acetylene, to varied extents. These materials also show potential for gas separation technology, display remarkable water transport through hydrophobic crystals, and clearly show that molecules within crystals are capable of cooperating with guests as they move through non-porous environments. This work is presented within a broader topic which also encompasses crystal engineering and (microporous) metal-organic frameworks (MOF's).

Crystal porosity and the burden of proof

The study of porosity in the context of crystal engineering is rapidly growing in intensity. However, claims of porosity are often highly subjective and use of the term "porous" is susceptible to abuse. This contribution discusses some of the criteria to be considered when stating that a particular crystal structure is porous.

Storage of methane and freon by interstitial van der Waals confinement

A known host-guest assembly, organized only by means of relatively weak dispersive forces, exhibits hitherto unappreciated thermal stability. The hexagonal close-packed arrangement of calix[4]arene contains lattice voids that can occlude small, highly volatile molecules. This host-guest system can be exploited to retain a range of freons, as well as methane, not only well above their normal boiling points, but also at relatively high temperatures and low pressures. The usually overlooked van der Waals interactions in organic crystals can indeed be used in a highly stable supramolecular system for gas storage.

Characterization of supramolecular (H2O)18 water morphology and water-methanol (H2O)15(CH3OH)3 clusters in a novel phosphorus functionalized trimeric amino acid host

Phosphorus functionalized trimeric alanine compounds (l)- and (d)-P(CH(2)NHCH(CH(3))COOH)(3) 2 are prepared in 90% yields by the Mannich reaction of Tris(hydroxymethyl)phosphine 1 with (l)- or (d)- Alanine in aqueous media. The hydration properties of (l)-2 and (d)-2 in water and water-methanol mixtures are described. The crystal structure analysis of (l)-2.4H(2)O, reveals that the alanine molecules pack to form two-dimensional bilayers running parallel to (001). The layered structural motif depicts two closely packed monolayers of 2 each oriented with its phosphorus atoms projected at the center of the bilayer and adjacent monolayers are held together by hydrogen bonds between amine and carboxylate groups. The water bilayers are juxtaposed with the H-bonded alanine trimers leading to 18-membered (H(2)O)(18) water rings. Exposure of aqueous solution of (l)-2 and (d)-2 to methanol vapors resulted in closely packed (l)-2 and (d)-2 solvated with mixed water-methanol (H(2)O)(15)(CH(3)OH)(3) clusters. The O-O distances in the mixed methanol-water clusters of (l)-2.3H(2)O.CH(3)OH and (d)-2.3H(2)O.CH(3)OH (O-O(average) = 2.857 A) are nearly identical to the O-O distance observed in the supramolecular (H(2)O)(18) water structure (O-O(average) = 2.859 A) implying the retention of the hydrogen bonded structure in water despite the accommodation of hydrophobic methanol groups within the supramolecular (H(2)O)(15)(CH(3)OH)(3) framework. The O-O distances in (l)-2.3H(2)O.CH(3)OH and (d)-2.3H(2)O.CH(3)OH and in (H(2)O)(18) are very close to the O-O distance reported for liquid water (2.85 A).

Organization of the interior of molecular capsules by hydrogen bonding

The enclosure of functional entities within a protective boundary is an essential feature of biological systems. On a molecular scale, free-standing capsules with an internal volume sufficiently large to house molecular species have been synthesized and studied for more than a decade. These capsules have been prepared by either covalent synthesis or self-assembly, and the internal volumes have ranged from 200 to 1,500 A(3). Although biological systems possess a remarkable degree of order within the protective boundaries, to date only steric constraints have been used to order the guests within molecular capsules. In this article we describe the synthesis and characterization of hexameric molecular capsules held together by hydrogen bonding. These capsules possess internal order of the guests brought about by hydrogen bond donors within, but not used by, the framework of the capsule. The basic building blocks of the hexameric capsules are tetrameric macrocycles related to resorcin[4]arenes and pyrogallol[4]arenes. The former contain four 1,3-dihydroxybenzene rings bridged together by -CHR- units, whereas the latter contain four 1,2,3-trihydroxybenzene rings bridged together. We now report the synthesis of related mixed macrocycles, and the main focus is on the macrocycle composed of three 1,2,3-trihydroxybenzene rings and one 1,3-dihydroxybenzene ring bridged together. The mixed macrocycles self-assemble from a mixture of closely related compounds to form the hexameric capsule with internally ordered guests.

Lariat ether receptor systems show experimental evidence for alkali metal cation-pi interactions

Cation-pi interactions occur between cations and electron-rich species such as double bonds, triple bonds, and arenes. The pi-electron system may be neutral or anionic, but the latter are less relevant to biology, at least so far as is currently known. Among the 20 essential amino acids, there are four aromatic residues. These are benzene, phenol, indole, and imidazole, on the side chains of phenylalanine, tyrosine, tryptophan, and histidine, respectively. Of these, imidazole is expected to be a sigma-donor, and benzene, phenol, and indole are antipicated to serve as pi-donors. Sodium and potassium are the most abundant cations in living systems. This Account describes an experimental system that has been developed to probe, especially by X-ray crystallography, the interactions that occur between Na(+) or K(+) and the neutral arenes of particular biological significance.

Exceptionally large positive and negative anisotropic thermal expansion of an organic crystalline material

In general, the relatively modest expansion experienced by most materials on heating is caused by increasing anharmonic vibrational amplitudes of the constituent atoms, ions or molecules. This phenomenon is called positive thermal expansion (PTE) and usually occurs along all three crystallographic axes. In very rare cases, structural peculiarities may give rise either to anomalously large PTE, or to negative thermal expansion (NTE, when lattice dimensions shrink with heating). As NTE and unusually large PTE are extremely uncommon for molecular solids, mechanisms that might give rise to such phenomena are poorly understood. Here we show that the packing arrangement of a simple dumbbell-shaped organic molecule, coupled with its intermolecular interactions, facilitates a cooperative mechanical response of the three-dimensional framework to changes in temperature. A series of detailed structural determinations at 15-K intervals has allowed us to visualize the process at the molecular level. The underlying mechanism is reminiscent of a three-dimensional (3D) folding trellis and results in exceptionally large and reversible uniaxial PTE and biaxial NTE of the crystal. Understanding such mechanisms is highly desirable for the future design of sensitive thermomechanical actuators.

Hydrogen-bonded molecular capsules are stable in polar media

Robust, very large hydrogen-bonded capsules which are even stable in 50:50 water-acetone mixtures have been characterized both in solution and in the solid state.

Toward Mimicking Viral Geometry with Metal-Organic Systems

Icosahedral and cuboctahedral arrangements of calixarenes, a nanometer-scale, spheroidal assembly of 12 calixarene molecules, can be manipulated in a highly controlled fashion. Previously, such assemblies were observed to favor placement of the calixarenes at the vertexes of an icosahedron. A supramolecular constraint is employed in order to enforce molecular alignment and produce a cuboctahedral arrangement. The internal volume of the cuboctahedron is approximately 30% greater than that of the icosahedron. Furthermore, in stark contrast to that of the icosahedral Platonic solid, the shell of the cuboctahedral Archimedean solid is porous.

Alkali metal cation-pi interactions observed by using a lariat ether model system

The Na(+) or K(+) cation-pi interaction has been experimentally probed by using synthetic receptors that comprise diaza-18-crown-6 lariat ethers having ethylene sidearms attached to aromatic pi-donors. The side chains are 2-(3-indolyl)ethyl (7), 2-(3-(1-methyl)indolyl)ethyl (8), 2-(3-(5-methoxy)indolyl)ethyl (9), 2-(4-hydroxyphenyl)ethyl (10), 2-phenylethyl (11), 2-pentafluorophenylethyl (12), and 2-(1-naphthyl)ethyl (13). Solid-state structures are reported for six examples of alkali metal complexes in which the cation is pi-coordinated by phenyl, phenol, or indole. Indole-containing crown, 7, adopts a similar conformation when bound by NaI, KI, KSCN, or KPF(6). In each case, the macroring and both arenes coordinate the cation; the counteranion is excluded from the solvation sphere. NMR measurements in acetone-d(6) solution confirm the observed solid-state conformations of unbound 7 and 7.NaI. In 7.Na(+) and 7.K(+), the pyrrolo, rather than benzo, subunit of indole is the pi-donor for the alkali metal cation. Cation-pi complexes were also observed for 10.KI and11.KI. In these cases, the orientation of the cation on the aromatic ring is in accord with the binding site predicted by computational studies. In contrast to the phenyl case (11) the pentafluorophenyl group of 12 failed to coordinate K(+). Solid-state structures are also reported for 7.NaPF(6), 10.NaI, 11.NaI, 13.KI, 13.KPF(6), and 9.NaI, in which cation-pi complexation is not observed. Steric and electrostatic considerations in the pi-complexation of alkali metal cations by these lariat ethers are thought to account for the observed complexation behavior or lack thereof.

A Discrete Metallocyclic Complex that Retains Its Solvent-Templated Channel Structure on Guest Removal to Yield a Porous, Gas Sorbing Material

A discrete rectangular metal-organic complex that stacks to form one-dimensional channels filled with acetonitrile solvent molecules is described. Removal of the solvent under relatively mild conditions proceeds via a single-crystal to single-crystal transformation that leaves the host lattice unaltered. These findings proffer a design strategy for porous materials based on the simple principle that rigid molecular rings cannot pack efficiently and would thus favor the inclusion of guest species whenever possible. Upon guest removal, an efficiently packed new phase can then only be achieved by means of bond cleavage. Thus, achieving crystal porosity by maintaining robust metal-ligand coordination bonds in such discrete cyclic systems directly parallels the strategy employed for MOFs.