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The genome sequence of the devil's coach horse beetle, Ocypus olens (Müller, 1764). Wellcome Open Res 2024; 6:293. [PMID: 35572471 PMCID: PMC9069170 DOI: 10.12688/wellcomeopenres.17342.2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/18/2024] [Indexed: 03/26/2024] Open
Abstract
We present a genome assembly from an individual female Ocypus olens (the devil's coach horse; Arthropoda; Insecta; Coleoptera; Staphylinidae). The genome sequence is 1,084 megabases in span. The majority (98.81%) of the assembly is scaffolded into 20 chromosomal pseudomolecules, with the X sex chromosome assembled.
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2
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The genome sequence of the Summer Chafer, Amphimallon solstitiale (Linnaeus, 1758). Wellcome Open Res 2024; 9:138. [PMID: 38784435 PMCID: PMC11112308 DOI: 10.12688/wellcomeopenres.21100.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/19/2024] [Indexed: 05/25/2024] Open
Abstract
We present a genome assembly from an individual male Amphimallon solstitiale (the Summer Chafer; Arthropoda; Insecta; Coleoptera; Scarabaeidae). The genome sequence is 1,584.1 megabases in span. Most of the assembly is scaffolded into 11 chromosomal pseudomolecules, including the X and Y sex chromosomes. The mitochondrial genome has also been assembled and is 19.29 kilobases in length.
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3
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The genome sequence of the Four-banded Bee-grabber, Conops quadrifasciatus De Geer, 1776. Wellcome Open Res 2024; 9:136. [PMID: 38784436 PMCID: PMC11112309 DOI: 10.12688/wellcomeopenres.21106.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/23/2024] [Indexed: 05/25/2024] Open
Abstract
We present a genome assembly from an individual male Conops quadrifasciatus (the Four-banded Bee-grabber; Arthropoda; Insecta; Diptera; Conopidae). The genome sequence is 210.4 megabases in span. Most of the assembly is scaffolded into 7 chromosomal pseudomolecules, including the X and Y sex chromosomes. The mitochondrial genome has also been assembled and is 18.07 kilobases in length. Gene annotation of this assembly on Ensembl identified 23,090 protein coding genes.
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4
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The genome sequence of the Emperor moth, Saturnia pavonia (Linnaeus, 1758). Wellcome Open Res 2024; 9:48. [PMID: 38764484 PMCID: PMC11101921 DOI: 10.12688/wellcomeopenres.20652.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/13/2023] [Indexed: 05/21/2024] Open
Abstract
We present a genome assembly from an individual male Saturnia pavonia (the Emperor moth; Arthropoda; Insecta; Lepidoptera; Saturniidae). The genome sequence is 489.9 megabases in span. Most of the assembly is scaffolded into 30 chromosomal pseudomolecules, including the Z sex chromosome. The mitochondrial genome has also been assembled and is 15.29 kilobases in length. Gene annotation of this assembly on Ensembl identified 11,903 protein coding genes.
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5
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The genome sequence of the spotted cranefly, Nephrotoma appendiculata (Pierre, 1919). Wellcome Open Res 2024; 9:38. [PMID: 38779147 PMCID: PMC11109560 DOI: 10.12688/wellcomeopenres.20886.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/11/2024] [Indexed: 05/25/2024] Open
Abstract
We present a genome assembly from an individual male Nephrotoma appendiculata (the spotted cranefly; Arthropoda; Insecta; Diptera; Tipulidae). The genome sequence is 1,138.0 megabases in span. Most of the assembly is scaffolded into 4 chromosomal pseudomolecules, including the X sex chromosome. The mitochondrial genome has also been assembled and is 17.42 kilobases in length. Gene annotation of this assembly on Ensembl identified 17,753 protein coding genes.
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6
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The genome sequence of an ichneumonid wasp, Heteropelma amictum (Fabricius, 1775). Wellcome Open Res 2023; 8:537. [PMID: 38434733 PMCID: PMC10905020 DOI: 10.12688/wellcomeopenres.20364.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/02/2023] [Indexed: 03/05/2024] Open
Abstract
We present a genome assembly from an individual female Heteropelma amictum (an ichneumonid wasp; Arthropoda; Insecta; Hymenoptera; Ichneumonidae). The genome sequence is 226.4 megabases in span. Most of the assembly is scaffolded into 10 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 20.65 kilobases in length.
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7
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The genome sequence of the common buff snailkiller, Tetanocera ferruginea (Fallén, 1820). Wellcome Open Res 2023; 8:535. [PMID: 38434740 PMCID: PMC10904942 DOI: 10.12688/wellcomeopenres.20366.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/02/2023] [Indexed: 03/05/2024] Open
Abstract
We present a genome assembly from an individual male Tetanocera ferruginea (the common buff snailkiller; Arthropoda; Insecta; Diptera; Sciomyzidae). The genome sequence is 790.4 megabases in span. Most of the assembly is scaffolded into 7 chromosomal pseudomolecules, including the X and Y sex chromosomes. The mitochondrial genome has also been assembled and is 17.07 kilobases in length.
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8
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The genome sequence of the Wasp Spider, Argiope bruennichi (Scopoli, 1772). Wellcome Open Res 2023; 8:522. [PMID: 38434739 PMCID: PMC10904950 DOI: 10.12688/wellcomeopenres.20339.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/02/2023] [Indexed: 03/05/2024] Open
Abstract
We present a genome assembly from an individual female Argiope bruennichi (the Wasp Spider; Arthropoda; Arachnida; Araneae; Araneidae). The genome sequence is 1,778.4 megabases in span. Most of the assembly is scaffolded into 13 chromosomal pseudomolecules, including the X 1 and X 2 sex chromosomes. The mitochondrial genome has also been assembled and is 14.06 kilobases in length.
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9
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The genome sequence of the Saxon Wasp, Dolichovespula saxonica (Fabricius, 1793). Wellcome Open Res 2023; 8:498. [PMID: 38371738 PMCID: PMC10873546 DOI: 10.12688/wellcomeopenres.20180.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/12/2023] [Indexed: 02/20/2024] Open
Abstract
We present a genome assembly from an individual male Dolichovespula saxonica (the Saxon Wasp; Arthropoda; Insecta; Hymenoptera; Vespidae). The genome sequence is 221.8 megabases in span. Most of the assembly is scaffolded into 26 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 18.97 kilobases in length. Gene annotation of this assembly on Ensembl identified 10,856 protein coding genes.
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10
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The genome sequence of Fabricius' Nomad Bee, Nomada fabriciana (Linne, 1767). Wellcome Open Res 2023; 8:497. [PMID: 38558924 PMCID: PMC10980859 DOI: 10.12688/wellcomeopenres.20184.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/12/2023] [Indexed: 04/04/2024] Open
Abstract
We present a genome assembly from an individual female Nomada fabriciana (Fabricius' Nomad Bee; Arthropoda; Insecta; Hymenoptera; Apidae). The genome sequence is 233.6 megabases in span. Most of the assembly is scaffolded into 12 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 19.4 kilobases in length. Gene annotation of this assembly on Ensembl identified 9,700 protein coding genes.
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11
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The genome sequence of a digger wasp, Ectemnius continuus (Fabricius, 1804). Wellcome Open Res 2023; 8:469. [PMID: 38533438 PMCID: PMC10964002 DOI: 10.12688/wellcomeopenres.20138.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/06/2023] [Indexed: 03/28/2024] Open
Abstract
We present a genome assembly from an individual female Ectemnius continuus (digger wasp; Arthropoda; Insecta; Hymenoptera; Crabronidae). The genome sequence is 260.3 megabases in span. Most of the assembly is scaffolded into 14 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 27.05 kilobases in length. Gene annotation of this assembly on Ensembl identified 9,835 protein coding genes.
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12
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The genome sequence of a druid fly, Clusia tigrina (Fallén, 1820). Wellcome Open Res 2023; 8:430. [PMID: 38449716 PMCID: PMC10915360 DOI: 10.12688/wellcomeopenres.20109.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/21/2023] [Indexed: 03/08/2024] Open
Abstract
We present a genome assembly from an individual male Clusia tigrina (a druid fly; Arthropoda; Insecta; Diptera; Clusiidae). The genome sequence is 1,216.4 megabases in span. Most of the assembly is scaffolded into 5 chromosomal pseudomolecules, including the X and Y sex chromosomes. The mitochondrial genome has also been assembled and is 17.68 kilobases in length.
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13
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The genome sequence of the Common Darter, Sympetrum striolatum (Charpentier, 1840). Wellcome Open Res 2023; 8:389. [PMID: 38434743 PMCID: PMC10904951 DOI: 10.12688/wellcomeopenres.19937.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/18/2023] [Indexed: 03/05/2024] Open
Abstract
We present a genome assembly from an individual female Sympetrum striolatum (the Common Darter; Arthropoda; Insecta; Odonata; Libellulidae). The genome sequence is 1349.6 megabases in span. Most of the assembly is scaffolded into 12 chromosomal pseudomolecules, including the X sex chromosome. The mitochondrial genome has also been assembled and is 16.16 kilobases in length.
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14
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The genome sequence of the dark-edged bee fly, Bombylius major (Linnaeus, 1758). Wellcome Open Res 2023; 8:379. [PMID: 38533437 PMCID: PMC10964003 DOI: 10.12688/wellcomeopenres.19804.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/27/2023] [Indexed: 03/28/2024] Open
Abstract
We present a genome assembly from an individual male Bombylius major (the dark-edged bee fly; Arthropoda; Insecta; Diptera; Bombyliidae). The genome sequence is 304.3 megabases in span. The whole assembly is scaffolded into 7 chromosomal pseudomolecules, including the X and Y sex chromosomes. The mitochondrial genome has also been assembled and is 17.8 kilobases in length. Gene annotation of this assembly on Ensembl identified 10,852 protein coding genes.
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15
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The genome sequence of the Figwort Cheilosia, Cheilosia variabilis (Panzer, 1798). Wellcome Open Res 2023; 8:377. [PMID: 37981983 PMCID: PMC10654491 DOI: 10.12688/wellcomeopenres.19851.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/08/2023] [Indexed: 11/21/2023] Open
Abstract
We present a genome assembly from an individual male Cheilosia variabilis (the Figwort Cheilosia; Arthropoda; Insecta; Diptera; Syrphidae). The genome sequence is 414.7 megabases in span. Most of the assembly is scaffolded into 7 chromosomal pseudomolecules, including the X and Y sex chromosomes. The mitochondrial genome has also been assembled and is 16.77 kilobases in length.
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16
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The genome sequence of the Lichen Button, Acleris literana (Linnaeus, 1758). Wellcome Open Res 2023; 8:232. [PMID: 38249958 PMCID: PMC10799227 DOI: 10.12688/wellcomeopenres.19481.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/12/2023] [Indexed: 01/23/2024] Open
Abstract
We present a genome assembly from an individual male Acleris literana (the Lichen Button; Arthropoda; Insecta; Lepidoptera; Tortricidae). The genome sequence is 674.9 megabases in span. Most of the assembly is scaffolded into 30 chromosomal pseudomolecules, including the Z sex chromosome. The mitochondrial genome has also been assembled and is 16.4 kilobases in length. Gene annotation of this assembly on Ensembl identified 12,577 protein coding genes.
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17
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A comparison of sampling methods and temporal patterns of arthropod abundance and diversity in a mature, temperate, Oak woodland. ACTA OECOLOGICA 2023. [DOI: 10.1016/j.actao.2022.103873] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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18
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The genome sequence of the orange ladybird, Halyzia sedecimguttata (Linnaeus, 1758). Wellcome Open Res 2023; 8:186. [PMID: 37476650 PMCID: PMC10354457 DOI: 10.12688/wellcomeopenres.19369.1] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/11/2023] [Indexed: 07/22/2023] Open
Abstract
We present a genome assembly from an individual Halyzia sedecimguttata (the orange ladybird, Arthropoda; Insecta; Coleoptera, Coccinellidae). The genome sequence is 919.1 megabases in span. Most of the assembly is scaffolded into 10 chromosomal pseudomolecules, including the X sex chromosome. The mitochondrial genome has also been assembled and is 21.0 kilobases in length. Gene annotation of this assembly on Ensembl identified 27,547 protein coding genes.
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19
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The genome sequence of Philonthus cognatus (Stephens, 1832) (Coleoptera, Staphylinidae), a rove beetle. Wellcome Open Res 2023; 8:169. [PMID: 37440996 PMCID: PMC10333781 DOI: 10.12688/wellcomeopenres.19336.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/31/2023] [Indexed: 07/15/2023] Open
Abstract
We present a genome assembly from an individual male Philonthus cognatus (a rove beetle; Arthropoda; Insecta; Coleoptera; Staphylinidae). The genome sequence is 1,030.6 megabases in span. Most of the assembly is scaffolded into 12 chromosomal pseudomolecules, including the X and Y sex chromosomes. The mitochondrial genome has also been assembled and is 20.7 kilobases in length. Gene annotation of this assembly on Ensembl identified 29,629 protein coding genes.
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20
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The genome sequence of the Buff-tailed Bumblebee, Bombus terrestris (Linnaeus, 1758). Wellcome Open Res 2023; 8:161. [PMID: 38283327 PMCID: PMC10818103 DOI: 10.12688/wellcomeopenres.19248.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/15/2023] [Indexed: 01/30/2024] Open
Abstract
We present a genome assembly from an individual female Bombus terrestris (the Buff-tailed Bumblebee; Arthropoda; Insecta; Hymenoptera; Apidae). The genome sequence is 393.0 megabases in span. Most of the assembly is scaffolded into 18 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 24.7 kilobases in length. Gene annotation of this assembly on Ensembl identified 14,435 protein coding genes.
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21
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The genome sequence of the Early Bumblebee, Bombus pratorum (Linnaeus, 1761). Wellcome Open Res 2023; 8:143. [PMID: 37954924 PMCID: PMC10632595 DOI: 10.12688/wellcomeopenres.19250.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/17/2023] [Indexed: 11/14/2023] Open
Abstract
We present a genome assembly from an individual female Bombus pratorum (the Early Bumblebee; Arthropoda; Insecta; Hymenoptera; Apidae). The genome sequence is 285.1 megabases in span. Most of the assembly is scaffolded into 18 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 21.5 kilobases in length. Gene annotation of this assembly on Ensembl identified 13,746 protein coding genes.
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22
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The genome sequence of the Common Carder Bee, Bombus pascuorum (Scopoli, 1763). Wellcome Open Res 2023; 8:142. [PMID: 37621574 PMCID: PMC10444996 DOI: 10.12688/wellcomeopenres.19251.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/17/2023] [Indexed: 08/26/2023] Open
Abstract
We present a genome assembly from an individual female Bombus pascuorum (the Common Carder Bee; Arthropoda; Insecta; Hymenoptera; Apidae). The genome sequence is 307.5 megabases in span. Most of the assembly is scaffolded into 17 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 21.9 kilobases in length. Gene annotation of this assembly on Ensembl identified 12,999 protein coding genes.
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23
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The genome sequence of the Golden-tailed Leafwalker, Xylota sylvarum (Linnaeus, 1758). Wellcome Open Res 2023; 8:134. [PMID: 38707492 PMCID: PMC11066536 DOI: 10.12688/wellcomeopenres.19241.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/15/2023] [Indexed: 05/07/2024] Open
Abstract
We present a genome assembly from an individual male Xylota sylvarum (the Golden-tailed Leafwalker; Arthropoda; Insecta; Diptera; Syrphidae). The genome sequence is 534.8 megabases in span. Most of the assembly is scaffolded into five chromosomal pseudomolecules, including the assembled X sex chromosome. The mitochondrial genome has also been assembled and is 16.0 kilobases in length. Gene annotation of this assembly on Ensembl identified 11,993 protein coding genes.
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24
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The genome sequence of the Kite-tailed Robberfly, Machimus atricapillus (Fallén, 1814). Wellcome Open Res 2023; 8:113. [PMID: 37928207 PMCID: PMC10622858 DOI: 10.12688/wellcomeopenres.19080.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/28/2023] [Indexed: 11/07/2023] Open
Abstract
We present a genome assembly from an individual male Machimus atricapillus (the Kite-tailed Robberfly; Arthropoda; Insecta; Diptera; Asilidae). The genome sequence is 268.6 megabases in span. Most of the assembly is scaffolded into six chromosomal pseudomolecules, including the X and Y sex chromosomes. The mitochondrial genome has also been assembled and is 16.3 kilobases in length. Gene annotation of this assembly on Ensembl identified 10,978 protein coding genes.
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25
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The genome sequence of the Common Snout Hoverfly, Rhingia campestris (Meigen, 1822). Wellcome Open Res 2023. [DOI: 10.12688/wellcomeopenres.19036.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/25/2023] Open
Abstract
We present a genome assembly from an individual male Rhingia campestris (the Common Snout Hoverfly; Arthropoda; Insecta; Diptera; Syrphidae). The genome sequence is 720 megabases in span. Most of the assembly is scaffolded into five chromosomal pseudomolecules, including the assembled X sex chromosome. The mitochondrial genome has also been assembled and is 16.7 kilobases in length. Gene annotation of this assembly on Ensembl has identified 22,748 protein coding genes.
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26
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The genome sequence of the Turnip Sawfly, Athalia rosae (Linnaeus, 1758). Wellcome Open Res 2023; 8:87. [PMID: 38235342 PMCID: PMC10792271 DOI: 10.12688/wellcomeopenres.18993.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/06/2023] [Indexed: 01/19/2024] Open
Abstract
We present a genome assembly from an individual female Athalia rosae (the Turnip Sawfly; Arhropoda; Insecta; Hymenoptera; Athaliidae). The genome sequence is 172 megabases in span. Most of the assembly is scaffolded into eight chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 16.3 kilobases in length. Gene annotation of this assembly on Ensembl identified 11,393 protein coding genes.
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27
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The genome sequence of the Field Cuckoo-bee, Bombus campestris (Panzer, 1801). Wellcome Open Res 2023; 8:77. [PMID: 37969482 PMCID: PMC10646345 DOI: 10.12688/wellcomeopenres.18985.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/03/2023] [Indexed: 11/17/2023] Open
Abstract
We present a genome assembly from an individual male Bombus campestris (the Field Cuckoo-bee; Arthropoda; Insecta; Hymenoptera; Apidae). The genome sequence is 275 megabases in span. Most of the assembly is scaffolded into 25 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 24.7 kilobases in length. Gene annotation of this assembly on Ensembl identified 12,993 protein coding genes.
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28
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The genome sequence of the Forest Cuckoo Bee, Bombus sylvestris (Lepeletier, 1832). Wellcome Open Res 2023; 8:78. [PMID: 37881254 PMCID: PMC10594053 DOI: 10.12688/wellcomeopenres.18986.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/03/2023] [Indexed: 10/27/2023] Open
Abstract
We present a genome assembly from an individual male Bombus sylvestris (the Forest Cuckoo Bee; Arthropoda; Insecta; Hymenoptera; Apidae). The genome sequence is 303 megabases in span. Most of the assembly is scaffolded into 24 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 23.6 kilobases in length. Gene annotation of this assembly on Ensembl has identified 13,025 protein coding genes.
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29
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The genome sequence of the Lesser Hornet Hoverfly, Volucella inanis (Linnaeus, 1758). Wellcome Open Res 2023; 8:69. [PMID: 37928210 PMCID: PMC10620480 DOI: 10.12688/wellcomeopenres.18897.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/18/2023] [Indexed: 11/07/2023] Open
Abstract
We present a genome assembly from an individual female Volucella inanis (the Lesser Hornet Hoverfly; Arthropoda; Insecta; Diptera; Syrphidae). The genome sequence is 961 megabases in span. Most of the assembly is scaffolded into six chromosomal pseudomolecules, including the assembled X sex chromosome. The mitochondrial genome has also been assembled and is 16.0 kilobases in length. Gene annotation of this assembly on Ensembl has identified 11,616 protein coding genes.
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30
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The genome sequence of a beetle-killing wasp, Tiphia femorata (Fabricius, 1775). Wellcome Open Res 2023; 8:57. [PMID: 38037557 PMCID: PMC10687388 DOI: 10.12688/wellcomeopenres.18893.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/18/2023] [Indexed: 12/02/2023] Open
Abstract
We present a genome assembly from an individual female Tiphia femorata (a beetle-killing wasp; Arthropoda; Insecta; Hymenoptera; Tiphilidae). The genome sequence is 276 megabases in span. Most of the assembly (98.73%) is scaffolded into 12 chromosomal pseudomolecules. The complete mitochondrial genome was also assembled and is 22.4 kilobases in length. Annotation of the genome in Ensembl identified 10,470 protein-coding genes.
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31
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The genome sequence of a soldier beetle, Podabrus alpinus (Paykull, 1798). Wellcome Open Res 2023. [DOI: 10.12688/wellcomeopenres.18890.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
Abstract
We present a genome assembly from an individual female Podabrus alpinus (soldier beetle; Arthropoda; Insecta; Coleoptera; Cantharidae). The genome sequence is 777 megabases in span. Most of the assembly is scaffolded into seven chromosomal pseudomolecules, including the assembled X sex chromosome. The mitochondrial genome has also been assembled and is 18.8 kilobases in length. Gene annotation of this assembly on Ensembl identified 30,955 protein coding genes.
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The genome sequence of the 6-spot burnet, Zygaena filipendulae (Linnaeus, 1758). Wellcome Open Res 2022. [DOI: 10.12688/wellcomeopenres.17924.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
We present a genome assembly from an individual female Zygaena filipendulae (6-spot burnet; Arthropoda; Insecta; Lepidoptera; Zygaenidae). The genome sequence is 365.9 megabases in span. The majority of the assembly (99.99%) is scaffolded into 31 chromosomal pseudomolecules, with the W and Z sex chromosomes assembled. The complete mitochondrial genome was also assembled and is 15.6 kilobases in length. Gene annotation of this assembly on Ensembl has identified 12,493 protein coding genes.
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Specimen and sample metadata standards for biodiversity genomics: a proposal from the Darwin Tree of Life project. Wellcome Open Res 2022. [DOI: 10.12688/wellcomeopenres.17605.1] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
The vision of the Earth BioGenome Project1 is to complete reference genomes for all of the planet’s ~2M described eukaryotic species in the coming decade. To contribute to this global endeavour, the Darwin Tree of Life Project (DToL2) was launched in 2019 with the aim of generating complete genomes for the ~70k described eukaryotic species that can be found in Britain and Ireland. One of the early tasks of the DToL project was to determine, define, and standardise the important metadata that must accompany every sample contributing to this ambitious project. This ensures high-quality contextual information is available for the associated data, enabling a richer set of information upon which to search and filter datasets as well as enabling interoperability between datasets used for downstream analysis. Here we describe some of the key factors we considered in the process of determining, defining, and documenting the metadata required for DToL project samples. The manifest and Standard Operating Procedure that are referred to throughout this paper are likely to be useful for other projects, and we encourage re-use while maintaining the standards and rules set out here.
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The genome sequence of the hawthorn shieldbug, Acanthosoma haemorrhoidale (Linnaeus, 1758). Wellcome Open Res 2022; 7:178. [PMID: 36865370 PMCID: PMC9971695 DOI: 10.12688/wellcomeopenres.17926.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/31/2022] [Indexed: 11/20/2022] Open
Abstract
We present a genome assembly from an individual male Acanthosoma haemorrhoidale (hawthorn shieldbug; Arthropoda; Insecta; Hemiptera; Acanthosomatidae). The genome sequence is 866 megabases in span. The majority of the assembly (99.98%) is scaffolded into 7 chromosomal pseudomolecules with the X and Y sex chromosomes assembled. The complete mitochondrial genome was also assembled and is 18.9 kilobases in length.
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Abstract
We present a genome assembly from an individual female Vespula germanica (the German wasp; Arthropoda; Insecta; Hymenoptera; Vespidae). The genome sequence is 206 megabases in span. The majority of the assembly (98.55%) is scaffolded into 25 chromosomal pseudomolecules. The mitochondrial genome was also assembled and is 18.0 kilobases in length. Annotation of the genome assembly on Ensembl has identified 12,361 protein-coding genes.
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Abstract
We present a genome assembly from an individual female Vespa crabro (the European hornet; Arthropoda; Insecta; Hymenoptera; Vespidae). The genome sequence is 230 megabases in span. The majority of the assembly (94.93%) is scaffolded into 25 chromosomal pseudomolecules.
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The genome sequence of the common green lacewing, Chrysoperla carnea (Stephens, 1836). Wellcome Open Res 2021; 6:334. [PMID: 37089663 PMCID: PMC10116181 DOI: 10.12688/wellcomeopenres.17455.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/02/2021] [Indexed: 11/20/2022] Open
Abstract
We present a genome assembly from an individual female Chrysoperla carnea (a common green lacewing; Arthropoda; Insecta; Neuroptera; Chrysopidae). The genome sequence is 560 megabases in span. The majority of the assembly (95.70%) is scaffolded into six chromosomal pseudomolecules, with the X sex chromosome assembled. Gene annotation of this assembly by the NCBI Eukaryotic Genome Annotation Pipeline has identified 12,985 protein coding genes.
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The genome sequence of Svensson’s copper underwing, Amphipyra berbera Rungs, 1949. Wellcome Open Res 2021. [DOI: 10.12688/wellcomeopenres.17350.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
We present a genome assembly from an individual male Amphipyra berbera (Svensson’s copper underwing; Arthropoda; Insecta; Lepidoptera; Noctuidae). The genome sequence is 582 megabases in span. The majority (99.97%) of the assembly is scaffolded into 31 chromosomal pseudomolecules, with the Z sex chromosome assembled.
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The genome sequence of the black clock beetle, Pterostichus madidus (Fabricius, 1775). Wellcome Open Res 2021; 6:301. [PMID: 35934999 PMCID: PMC9315234 DOI: 10.12688/wellcomeopenres.17347.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/02/2021] [Indexed: 11/24/2022] Open
Abstract
We present a genome assembly from an individual female
Pterostichus madidus (the black clock beetle; Arthropoda; Insecta; Coleoptera; Carabidae). The genome sequence is 705 megabases in span. The majority (99.96%) of the assembly is scaffolded into 19 chromosomal pseudomolecules, with the X sex chromosome assembled.
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The genome sequence of the devil's coach horse, Ocypus olens (Müller, 1764). Wellcome Open Res 2021; 6:293. [PMID: 35572471 PMCID: PMC9069170 DOI: 10.12688/wellcomeopenres.17342.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/02/2021] [Indexed: 11/20/2022] Open
Abstract
We present a genome assembly from an individual female Ocypus olens (the devil's coach horse; Arthropoda; Insecta; Coleoptera; Staphylinidae). The genome sequence is 1,084 megabases in span. The majority (98.81%) of the assembly is scaffolded into 20 chromosomal pseudomolecules, with the X sex chromosome assembled.
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The genome sequence of the common red soldier beetle, Rhagonycha fulva (Scopoli, 1763). Wellcome Open Res 2021; 6:243. [PMID: 36003953 PMCID: PMC9363978 DOI: 10.12688/wellcomeopenres.17198.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/03/2021] [Indexed: 11/20/2022] Open
Abstract
We present a genome assembly from an individual female Rhagonycha fulva (the common red soldier beetle; Arthropoda; Insecta; Coleoptera; Cantharidae). The genome sequence is 425 megabases in span. The majority of the assembly is scaffolded into seven chromosomal pseudomolecules, with the X sex chromosome assembled.
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Elevated CO 2 Impacts on Plant-Pollinator Interactions: A Systematic Review and Free Air Carbon Enrichment Field Study. INSECTS 2021; 12:insects12060512. [PMID: 34206033 PMCID: PMC8227562 DOI: 10.3390/insects12060512] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/11/2021] [Revised: 05/21/2021] [Accepted: 05/24/2021] [Indexed: 11/16/2022]
Abstract
Simple Summary Climate change is having a profound impact on pollination systems, yet we still do not know to what extent increasing concentrations of carbon dioxide (CO2) will directly affect the interactions between plants and their pollinators. We review all the existing published literature on the effect of elevated CO2 (eCO2) on flowering time, nectar and pollen production and plant–pollinator interactions. We also conduct a field experiment to test the effect of eCO2 on bluebells and their pollinators. We found that few studies have assessed the impact of eCO2 on pollination, and our field data found that bluebells flowered on average 6 days earlier under eCO2 conditions. Hoverflies and bumble bees were the main visitors to bluebell flowers, but insect activity was low early in the flowing period. Although we did not find a difference in the number of visits made by insects to bluebell flowers under eCO2, or the amount of seeds those flowers produced, the change in the timing of flowering could mean that a mismatch could develop between bluebells and their pollinators in the future, which would affect pollination success. Abstract The impact of elevated CO2 (eCO2) on plant–pollinator interactions is poorly understood. This study provides the first systematic review of this topic and identifies important knowledge gaps. In addition, we present field data assessing the impact of eCO2 (150 ppm above ambient) on bluebell (Hyacinthoides non-scripta)–pollinator interactions within a mature, deciduous woodland system. Since 1956, only 71 primary papers have investigated eCO2 effects on flowering time, floral traits and pollination, with a mere 3 studies measuring the impact on pollination interactions. Our field experiment documented flowering phenology, flower visitation and seed production, as well as the abundance and phenology of dominant insect pollinators. We show that first and mid-point flowering occurred 6 days earlier under eCO2, but with no change in flowering duration. Syrphid flies and bumble bees were the dominant flower visitors, with peak activity recorded during mid- and late-flowering periods. Whilst no significant difference was recorded in total visitation or seed set between eCO2 and ambient treatments, there were clear patterns of earlier flowering under eCO2 accompanied by lower pollinator activity during this period. This has implications for potential loss of synchrony in pollination systems under future climate scenarios, with associated long-term impacts on abundance and diversity.
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The genome sequence of the common malachite beetle, Malachius bipustulatus (Linnaeus, 1758). Wellcome Open Res 2021; 6:322. [PMID: 36911104 PMCID: PMC9992895 DOI: 10.12688/wellcomeopenres.17381.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/10/2021] [Indexed: 11/20/2022] Open
Abstract
We present a genome assembly from an individual female Malachius bipustulatus (the common malachite beetle; Arthropoda; Insecta; Coleoptera; Melyridae). The genome sequence is 544 megabases in span. The majority (99.70%) of the assembly is scaffolded into 10 chromosomal pseudomolecules, with the X sex chromosome assembled.
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Abstract P4-10-04: EMBRACE (Ending metastatic breast cancer for everyone): A comprehensive approach to improve the care of patients with metastatic breast cancer. Cancer Res 2018. [DOI: 10.1158/1538-7445.sabcs17-p4-10-04] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Abstract
Background: In contrast to early stage breast cancer, the quality of care for patients with metastatic breast cancer (MBC) has been relatively understudied, as have interventions to improve care in the real-world setting. Patients with MBC face a variety of unique needs related to their disease, treatment options, and supportive care. Little attention has been focused on leveraging the strengths of academic and community-based settings to provide optimal care for these patients. To address these critical issues, we have designed and implemented a comprehensive program that combines clinical care, clinical research, physician engagement and patient education to optimize the care of MBC patients.
Methods: We developed a consistent and comprehensive intake process and follow-up approach for MBC patients who were seen at least once in the Breast Oncology Clinic (BOC) at Dana-Farber Cancer Institute (DFCI). A key component of our approach is the EMBRACE coordinator who meets with each MBC patient at the first clinic visit to review the clinical program, available educational and supportive resources, and consents to research studies. Each coordinator supports the DFCI-based oncologist and follows a discrete patient panel longitudinally, for whom they are responsible for facilitating referrals to supportive care resources, identifying potential candidates for trial prescreening, tracking availability of results from molecular testing for clinical trial matching, facilitating communication between DFCI-based providers and referring providers and organizing re-consultation visits when clinically appropriate. The coordinator contacts patients every 3 months to inquire about the patient's overall health and needs and provides updates on upcoming educational and supportive care activities at our institution. Educational offerings have been expanded to include a bi-annual newsletter, quarterly email updates, webcasts and an annual educational patient forum. Results: The program was fully implemented in the BOC across 27 oncologists in August 2016, after the start of a pilot in July 2015. On average, the program enrolls 30 to 40 new MBC patients per month at their initial visit. The EMBRACE coordinators currently support the DFCI-based oncologists in the care of approximately 1500 new and existing MBC patients and facilitate collaborations with 350 referring providers.
Conclusions: The EMBRACE program has made a tangible improvement in the quality of care for patients with MBC in our clinic. We have successfully established the infrastructure of the coordinator role and a robust tracking system to support the patient, DFCI-based provider, and referring provider. While the program has been solely based at DFCI, we believe that our approach has the potential for impact beyond our institution and ultimately serve as a model for enhanced academic-community-patient partnership.
Citation Format: Hughes ME, Frank ES, Merrill MS, Santiago RA, Kuhnly N, Crowley LM, Gupta G, Winer EP, Lin NU. EMBRACE (Ending metastatic breast cancer for everyone): A comprehensive approach to improve the care of patients with metastatic breast cancer [abstract]. In: Proceedings of the 2017 San Antonio Breast Cancer Symposium; 2017 Dec 5-9; San Antonio, TX. Philadelphia (PA): AACR; Cancer Res 2018;78(4 Suppl):Abstract nr P4-10-04.
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Hospital DRG coding: how physicians can help. Tex Med 1991; 87:8. [PMID: 1903564] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
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