Current status and topical issues on the use of eDNA-based targeted detection of rare animal species

Animal detection through DNA present in environmental samples (eDNA) is a valuable tool for detecting rare species, that are difficult to observe and monitor. eDNA-based tools are underpinned by molecular evolutionary principles, key to devising tools to efficiently single out a targeted species from an environmental sample. Here, we present a comprehensive review of the use of eDNA-based methods for the detection of targeted animal species, such as rare, endangered, or invasive species, through the analysis of 549 publications (2008-2022). Aquatic ecosystems have been the most surveyed, in particular, freshwaters (74 %), and to a less extent marine (14 %) and terrestrial systems (10 %). Vertebrates, in particular, fish (38 %), and endangered species, have been the focus of most of these studies, and Cytb and COI are the most employed markers. Among invertebrates, assays have been mainly designed for Mollusca and Crustacea species (21 %), in particular, to target invasive species, and COI the most employed marker. Targeted molecular approaches, in particular qPCR, have been the most adopted (75 %), while eDNA metabarcoding has been rarely used to target single or few species (approx. 6 %). However, less attention has been given in these studies to the effects of environmental factors on the amount of shed DNA, the differential amount of shed DNA among species, or the sensitivity of the markers developed, which may impact the design of the assays, particularly to warrant the required detection level and avoid false negatives and positives. The accuracy of the assays will also depend on the availability of genetic data and vouchered tissue or DNA samples from closely related species to assess both marker and primers' specificity. In addition, eDNA-based assays developed for a particular species may have to be refined for use in a new geographic area taking into account site-specific populations, as well as any intraspecific variation.

[Dilated cardiomyopathy in a patient with Becker's muscular dystrophy. A clinical case report]

The authors report a case of dilated cardiomyopathy caused by a muscular dystrophy, namely Becker's disease. The peculiarity of this case is the fact that the patient has lived enough time to have clinical manifestations of myocardiopathy because, in general, in this myopathy, the affected males have a short life and the early myocardial involvement is rare. A particular attention is paid to the need of consulting the cardiac patients not forgetting an eventual causal systemic disease and to the crucial importance of the genetic counselling in that kind of diseases.

Cell Wall-Mediated Antifungal Activity of the Aqueous Extract of Hedera helix L. Leaves Against Diplodia corticola

Background/Objectives: Cork oak forests have been declining due to fungal pathogens such as Diplodia corticola. However, the preventive fungicides against this fungus have restricted use due to the deleterious effects on human health and the environment, prompting the need for sustainable alternatives. Here, we describe the antifungal activity of an aqueous extract of Hedera helix L. leaves (HAE) against D. corticola and the possible mechanism of action. Results/Methods: The chemical analysis revealed compounds like the saponin hederacoside C, quinic acid, 5-O-caffeoylquinic acid, rutin, and glycoside derivatives of quercetin and kaempferol, all of which have been previously reported to possess antimicrobial activity. Remarkable in vitro antifungal activity was observed, reducing radial mycelial growth by 70% after 3 days of inoculation. Saccharomyces cerevisiae mutants, bck1 and mkk1/mkk2, affected the cell wall integrity signaling pathway were more resistant to HAE than the wild-type strain, suggesting that the extract targets kinases of the signaling pathway, which triggers toxicity. The viability under osmotic stress with 0.75 M NaCl was lower in the presence of HAE, suggesting the deficiency of osmotic protection by the cell wall. Conclusions: These results suggest that ivy extracts can be a source of new natural antifungal agents targeting the cell wall, opening the possibility of preventing fungal infections in cork oaks and improving the cork production sector using safer and more sustainable approaches.

[Clinical correlation of angiographic restenosis, isolated or associated with stress test variables, with a population that had stent implantation]

OBJECTIVE

We analyse the value of the clinical data, isolated or associated with the stress EKG (SEKG) variables, in the detection of angiographic restenosis (AR: lesion > 50%), in a group of patients (pts) submitted to coronary angioplasty (PTCA) with stenting.

POPULATION AND METHODS

105 patients were followed prospectively (male: 87%; age: 56 +/- 10); clinical evaluation was performed in the 1st, 3rd and 6th month, SEKG in the 4th month and recatheterization for angiographic control in the 6th month. The vascular risk factors, cause of admission, medication at discharge, angiographic and procedure characteristics were analysed.

RESULTS

The most frequent vascular risk factors were hypertension (42%), smoking (64%), and dyslipidemia (52%); 30% had previous ischemic heart disease. The indication for PTCA was myocardial infarction (direct PTCA or residual ischemia) in 42% and angina in 59%. All patients were discharged with AAS and ticlopidine, 38% with beta-blockers, 59% with calcium channel blockers and 92% with nitrates. Thirty-eight percent had multivessel disease. They were submitted to dilatation with the implantation of 128 stents in 199 vessels. An intraaortic balloon pump was used in 13% and Abciximab in 47% of the procedures. In the recatheterization for angiographic control in the sixth month, 30 patients had angiographic restenosis (AR rate = 25.2%). In the clinical evaluation, 22 patients (20.9%) had angina, and 14 of them had angiographic restenosis (clinical restenosis rate = 13.3%). In the 16 asymptomatic patients with AR, 5 had positive SEKG.

CONCLUSION

The presence of angina in a group of patients submitted to coronary angioplasty with stenting has a low sensitivity (54%), a good specificity (88%), a positive predictive value of 64% and negative of 83% in the detection of angiographic restenosis. The association with clinical data improves sensitivity (83%), with a decrease in specificity (61%).

[Evaluation of the prognostic value of cardiac troponin i in patients with unstable angina]

OBJECTIVE

The purpose of this study was to evaluate the in-hospital and follow-up prognostic value of cardiac troponin I in patients admitted in the Coronary Care Unit and discharged with the diagnosis of unstable angina.

POPULATION AND METHODS

118 patients were admitted in the Coronary Care Unit, discharged with the diagnosis of unstable angina with a follow-up of 13.5 months. Cardiac Troponin I (cTnI) was measured on admission, 4 and 12 hours later. For the purposes of the study, we chose a cut-off value of 0.4 ng/mL as the minimal acceptable concentration of cTnI. The patients were divided in two groups: Group A (n = 82) if all measurements with cTnI < or = 0.4 ng/mL and Group B (n = 36) if any measurement with cTnI > 0.4 ng/mL. In both groups, multiple coronary events during hospitalisation and follow-up were evaluated: death; acute myocardial infarction; angina; hospitalisation; coronary surgery or angioplasty; and also the severity of coronary artery disease and the number of patients without coronary events. The results were compared by the Student's unpaired t-test and by chi-square test.

RESULTS

Age, sex and vascular risk factors were similar in both groups. There was a statistically significant increase in angina and coronary surgery with increasing levels of cardiac troponin I (Group B) (13 vs 5, p < 0.0001), multiple vessel disease (16 vs 18, p < 0.0008) and myocardial infarction (12% vs 0%, p < 0.03). Sixty patients had no coronary events in Group A compared to thirteen in Group B (p < 0.0001). There were no significant differences between the groups with respect to hospitalisation and angioplasty (17% in Group B vs 7% in Group A) and death (3% vs 0%).

CONCLUSIONS

In this population with unstable angina, cardiac troponin I level greater than 0.4 ng/mL measured in the 12 hours after admission provides useful prognostic information. It permits the early identification of patients with an increased risk of in-hospital and follow-up cardiac events and could be correlated with the severity of coronary artery disease.

Brazilian Table Olives: A Source of Lactic Acid Bacteria with Antimycotoxigenic and Antifungal Activity

Food and feed contamination by fungi, especially by toxigenic ones, is a global concern because it can pose serious health problems when the production of mycotoxins is involved. Lactic acid bacteria (LAB), well-known for fermenting foods, have been gaining attention for their antifungal and anti-mycotoxin properties. This work tested 14 LAB strains isolated from naturally fermented Brazilian table olives for growth inhibition of Aspergillus flavus, Aspergillus carbonarius, Penicillium nordicum, and Penicillium expansum. The strains Lacticaseibacillus paracasei subsp. paracasei CCMA 1764, Levilactobacillus brevis CCMA 1762, and Lactiplantibacillus pentosus CCMA 1768 showed the strongest antifungal activity, being more active against P. expansum. Aflatoxin B1 (AFB1), ochratoxin A (OTA), and patulin (PAT) production was reduced essentially by mycelia growth inhibition. The main organic acids detected in the cell free supernatant (CFS) were lactic and acetic acids. Tested LAB exhibited adsorption capacity against AFB1 (48-51%), OTA (28-33%), and PAT (23-24%). AFB1 was converted into aflatoxin B2a (AFB2a) by lactic and acetic acids produced by the strain CCMA 1764. A similar conversion was observed in solutions of these organic acids (0.1 M). These findings demonstrate the potential of isolated LAB strains as natural agents to control toxigenic fungi and their mycotoxins in fermented products, such as table olives.

Primary angioplasty for acute myocardial infarction complicated by cardiogenic shock on admission

AIM

To evaluate primary angioplasty results for the treatment of acute myocardial infarction complicated by cardiogenic shock on admission.

POPULATION AND METHODS

Retrospective analysis of 11 consecutive patients with acute myocardial infarction complicated by cardiogenic shock (defined as systolic blood pressure below 80 mmHg and signs of hypoperfusion, despite volume expanders and/or vasopressors infusion) treated with primary angioplasty. Clinical characteristics, angiographic data, hospital outcome and follow-up were analysed.

RESULTS

There were ten males (90.9%) with a mean age of 66 years. Eight patients had anterior wall myocardial infarction and three patients had inferior wall myocardial infarction, two of which with extension to the right ventricle. The mean time between symptom onset and angioplasty was 3.5 hours. Three patients had left main coronary artery occlusion; three patients had single vessel disease and five patients had multivessel disease. The angiographic success rate (open infarct-related artery and TIMI III flow) was 90.9% (ten patients). Stent implantation was performed in five patients. Abciximab was given in five patients. In-hospital mortality rate was 36.4% (four patients). The surviving patients had a mean ejection fraction of 43.1% on discharge. In a mean follow-up of 16.2 months, one patient had coronary artery bypass graft and one had stroke.

CONCLUSION

Based on published data, our experience with this short series of cases shows that primary angiography should be regarded as a positive option for the treatment of acute myocardial infarction complicated by cardiogenic shock.

[Acute myocardial infarct--the hospital phase and follow-up: sex-related differences]

OBJECTIVES

The aim of this study was to evaluate the differences between male and female patients, during hospitalization and follow-up, after acute myocardial infarction.

PATIENTS

The clinical data and follow-up files of 504 previously hospitalized patients were studied. The patients were divided in two groups: Group A (male, n = 434) with a mean age of 56.4 +/- 11.7 years, and Group B (female, n = 70) with a mean age of 64.1 +/- 9.2 years.

METHODS

The following parameters were studied: vascular risk factors; clinical, functional and anatomic aspects during hospitalization; therapeutic orientation and events; and mortality during follow-up.

RESULTS

Hypertension, diabetes, obesity, anterior infarction and lower ejection fraction were more common in Group B. Coronary angiography and thrombolytic therapy were performed more frequently in Group A; severe coronary disease was more common in this group (60.8% vs 38.9%, p < 0.05). During the follow-up we observed a worse prognosis in the Group B, with a higher incidence of events, morbidity and mortality. Therapeutic approach was more aggressive in the male group.

CONCLUSION

We observed a worse prognosis in the female patients after myocardial infarction, this fact may be attributed to a later age and higher previous morbidity; the therapeutic and diagnostic procedures are generally less aggressive in females, who are consequently referred for revascularization with more advanced stages of disease, and therefore with higher morbidity and mortality, in the short and long term, even though multivessel coronary disease is more common in males. Thrombolytic therapy was administered and coronary angiography was performed more often in Group A, who had more severe coronary disease.

Antibacterial and antioxidant activities of streptomyces sp. Strain FR7 isolated from forest soil

Actinomycetes produce secondary metabolites with many bioactivities such as antimicrobial, which can be useful as alternatives against resistant bacterial strains. Therefore, the screening of new habitats is likely to provide new strains with high potential. In this work, the antimicrobial capacity was used to select Streptomyces sp. strains isolated from Raf Raf forest (Tunisia). From the strain displaying higher activity, FR7, an ethyl acetate extract was prepared under optimized culturing conditions (10 days at 30 ºC in ISP2 medium with initial pH 8), showing significant antimicrobial activity against Micrococcus luteus and Staphylococcus aureus (MIC = 5 μg ml-1), and Listeria monocytogenes and Pseudomonas aeruginosa (MIC = 20 μg ml-1). The extract displayed strong DPPH radical scavenging activity (IC50 = 1.3 µg ml-1) and protection of yeast cells from H2O2-induced oxidative stress determined by flow cytometry with dichlorofluorescein diacetate. The crude extract showed the presence of polyketides, with methylsalicylic acid as moiety, a large and diverse group of secondary metabolites with a wide range of bioactivities, including antioxidant and antibacterial. Based on 16S RNA gene sequences, strain FR7 was identified as belonging to genus Streptomyces with high resemblance to Streptomyces iakyrus. Streptomyces sp. FR7 has great potential as a source of antibacterial and antioxidant metabolites.

[Angioplasty with stenting in single vessel disease: non invasive methods for detecting restenosis]

OBJECTIVE

To compare the value of the myocardial perfusion imaging with 99Tc sestamibi (MIBI) with clinical data and stress EKG (SEKG) variables, in the detection of angiographic restenosis (AR: lesion > 50%), in a group of patients (pts) with single vessel disease (angiographic lesion above 70% in one epicardial artery), submitted to coronary angioplasty (PTCA) with stenting.

POPULATION AND METHODS

Fifty-nine pts, followed prospectively, (49 males and 10 females aged 57 +/- 10) were submitted to 61 angioplasties, with dilatation of 59 vessels, and with stenting in 63 (1.07 stent/vessel). Clinical evaluation was performed in the first, third and sixth month, SEKG with MIBI in the fourth month and recatheterization for angiographic control in the sixth month. The pts were divided in two groups: R-positive angiographic restenosis (AR)--14 pts: NR--without AR--45 pts; the angiographic restenosis rate was 23.7%. The patients' history, cause of admission, procedure characteristics, medication at discharge, clinical events during follow-up, variables of stress EKG associated with myocardial perfusion and angiographic control were analyzed.

RESULTS

The cause of admission was the same in both groups (MI in R group: 28.6%; NR: 46.7%; p = ns). There was no difference in the discharge medication. The R group was more symptomatic (Angina: R = 50.0% vs NR = 11.1%; p < 0.001 clinical restenosis rate = 11.8%), and had more revascularization procedures (PTCA: R = 57.1% vs NR = 2.8%; p < 0.001/Bypass surgery: R = 14.3% vs NR = 0%; p = 0.01). This group had abnormal stress EKG more frequently (42.9 vs 20.0%, p = ns) and ischemia in the myocardial perfusion scintigraphy (57.1 vs 6.7% p < 0.001). [table: see text]

CONCLUSION

The clinical and diagnostic tests evaluated in this study showed a limited sensitivity in the detection of angiographic restenosis in a group of patients with single vessel disease submitted to coronary angioplasty and stenting. Myocardial scintigraphy was the best method for the detection of angiographic restenosis, showing a high specificity and a reasonable sensitivity.

Evaluation of biotechnological processing through solid-state fermentation of oilseed cakes on extracts bioactive potential

Oilseed cakes (OC) are natural sources of lignocellulosic biomass, produced every year in large amounts. In addition to their main applications as animal feed, plant or soil fertilizer, and compost, they present enormous potential for being used in biotechnological processes for the obtainment and extraction of valuable bioactive compounds. This work evaluated the effect of solid-state fermentation on the bioactive properties of extracts obtained from the bioprocessing of OC and evaluated the effect of solvents on the recovery of compounds with higher bioactive potential. A general decrease of EC50 values was observed for fermented extracts obtained using a mixture of water/methanol (1:1) as extraction solvent. A decrease in the minimum inhibitory concentration was observed for fermented water extracts compared to non-fermented. Additionally, growth inhibition of Listeria monocytogenes was observed when using aqueous methanolic fermented extracts. These extracts also exhibited a higher percentage of growth reduction against phytopathogenic fungi, and some extracts exhibited increased protection against genotoxic agents such as camptothecin and bisphenol A. It was demonstrated that bioprocessing of OC through SSF is an effective approach to obtaining valuable compounds with bioactive properties for use in the food, pharmaceutical or cosmetic industries.

Chemical characterization and antioxidant potential of Arthrospira sp., Thalassiosira sp., and Raphidonema sp

Microalgae are emerging as valuable sources of bioactive compounds. This study evaluates hexane extracts from Thalassiosira sp. and Raphidonema sp., and Arthrospira sp., for their bioactive potential. Saturated fatty acids predominated in Arthrospira sp. and Thalassiosira sp. while Raphidonema was rich in polyunsaturated fatty acids. Carotenoids, such as carotenes and xanthophylls, were abundant in Arthrospira sp., while Thalassiosira sp. contained chlorophylls and fucoxanthin derivatives, and Raphidonema sp. showed high levels of chlorophylls and xanthophylls. Antioxidant assays revealed up to 70 % radical scavenging activity, 60 % iron chelation, and up to 67 (μM) ferric-reducing power. Dose-dependent protective effects were observed in Schizosaccharomyces pombe and HepG2 cells, with viability improvements up to 50 %, indicating their potential as antioxidant-rich ingredients for functional foods, promoting health and disease prevention. This study enhances our understanding of Thalassiosira sp. and Raphidonema sp. while underscoring the promising applications of microalgae extracts in functional foods.

Lisinopril and diltiazem reduce left ventricular mass without changing blood pressure in normotensive subjects with exaggerated blood pressure response to exercise

OBJECTIVE

To determine whether high left ventricular mass may be reduced by antihypertensive drugs in normotensives with exaggerated blood pressure response to exercise as it occurs in hypertensive patients.

DESIGN AND METHODS

Randomized, single blind, controlled parallel study evaluating the influence of placebo; lisinopril 20 mg/day, diltiazem 180 mg/d for 5-6 months on left ventricular mass (LVM), evaluated by echo and on "casual" and 24-h ambulatory blood pressure (24-h BP) in normotensive subjects with exaggerated blood pressure response to exercise (Group I) and in weight--and age--matched mild-moderated hypertensive patients (Group II), all with high left ventricular mass.

PATIENTS

Placebo, lisinopril and diltiazem, were administered for 5-6 months in respectively 8+9+9 subjects of Group I and 8+9+10 patients in Group II.

RESULTS

Placebo did not change either LVM index or 24-h BP values in Group I and Group II. Diltiazem and lisinopril reduced LVM index in both Groups I and II but 24-h BP values were only reduced in Group II. Lisinopril appeared to be more potent than diltiazem on LVM regression. Slopes of LVM index regression were not different between Groups I and II for each drug. Drug-induced changes of LVM index did not correlate with blood pressure changes.

CONCLUSIONS

Drug-induced regression of LVM may be achieved in man (Group I) without any reduction of blood pressure. This may be explained by interference with growth-promoting systems other than with cardiac unloading. Also, the similar pattern of LVM regression that was observed in both Groups I and II suggests that similar underlying mechanisms may be involved in the LVH regression in these two populations.

Exploring the genetic expression of Wickerhamomyces anomalus during biosurfactant production from waste cooking oil

AIMS

Biosurfactants are valuable eco-friendly compounds with broad industrial applications, particularly when produced sustainably using yeast and renewable carbon sources. Despite the potential of yeast in biosurfactant synthesis, little is known about the specific gene expression changes underlying this process. This study investigates the genetic response of Wickerhamomyces anomalus CCMA 0358 to biosurfactant production using waste cooking oil (WCO) as a low-cost carbon source.

METHODS AND RESULTS

During a 0-12 h fermentation period, RNA (ribonucleic acid) sequencing revealed 829 differentially expressed genes in W. anomalus grown with WCO, suggesting targeted metabolic adaptations. Pathway analysis showed WCO's significant impact on glycolysis, gluconeogenesis, and lipid biosynthesis. Gene ontology annotations further indicated adaptive responses in ribosome biogenesis and lipid metabolism, which are crucial for the efficient utilization of WCO. Notably, WCO induced the upregulation of very-long-chain fatty acid precursors and adjustments in glycolytic enzyme expression, both essential for biosurfactant production.

CONCLUSIONS

This study reveals, for the first time, the specific genetic pathways and metabolic adjustments that W. anomalus employs to produce biosurfactants from WCO. The increased expression of lipid metabolism enzymes and cell membrane components highlights a tailored adaptive mechanism for lipid-rich waste substrates, positioning W. anomalus as a promising candidate for sustainable biosurfactant production.

[The effects of a cardiac rehabilitation program on 2 populations of coronary patients: acute myocardial infarct and coronary bypass surgery]

Cardiac rehabilitation programmes (CRP) have proven beneficial in coronary heart disease. The purpose of this study was to evaluate the effects of our CRP on two coronary heart disease populations: after acute myocardial infarction (AMI-CRP) and after coronary artery bypass surgery (CABG-CRP). Results were compared to control groups (AMI-C and CABG-C).

POPULATION

Group AMI-CRP: n = 43 patients, mean age = 48.7 +/- 9.8 years; Group AMI-C: n = 20 patients, mean age = 59.2 +/- 11.5 years; Group CABG-CRP: n = 54 patients, mean age = 54.9 +/- 9.7 years; Group CABG-C: n = 20 patients, mean age = 56.5 +/- 9.9 years. All patients are male and there were no significant differences in ventricular function and coronary disease severity. Parameters were evaluated in the AMI groups at discharge, 3 and 12 months after acute episode; in the CABG groups 3 and 12 months after surgery.

RESULTS

Both CRP groups improved their exercise capacity (significantly improved the peak values of METs and double product). A favorable lipid profile change (total cholesterol and HDL) was induced in the CABG-CRP group and more significant in the AMI-CRP group. No significant differences were observed in obesity indexes (body weight and BMI > or = 27.8 Kg/m2). A increase in nonsmokers was important in all groups. Professional reintegration was 91.7% in the AMI-CRP group and 84.4% in the CABG-CRP group. The CRP groups showed a better knowledge of the disease, and a beneficial change in relation to themselves and the world that resulted in a decrease in depression and anxiety.

CONCLUSIONS

Participation in our cardiac rehabilitation program, either after AMI or after CABG, improves cardio-respiratory fitness, favorably influences blood lipid profiles, and improves self-reliance and quality of life.

[Prevention of complications: a forgotten aspect of therapy? Thromboembolic complications]

In Heart Failure (HF) there is a prothrombotic state or hypercoagulation by changing of the blood flow, and by endothelial vessels or blood viscosity changes. Although these alterations in HF, the indication for an anticoagulant therapy is not precise, generally being done an empirical therapy, being still as a forgotten aspect in preventing the complications of this syndrome. When anticoagulant therapy is implemented the hemorrhagic complications risk must be carefully observed, for a significant quantity of patients may need hospital care. In spite of the existence of guidelines of the European Society of Cardiology and of the American Society of Heart Failure the decision of hypocoagulation treatment must be studied case by case, considering multiple facts, as the social state of the patient, because this therapy needs a good follow-up, a clinical surveillance and a frequent laboratory control.

Morfologia do pâncreas da paca (Cuniculus paca, Linnaeus, 1766)

RESUMO Este trabalho se baseou na descrição morfológica da paca (Cuniculus paca), espécie selvagem pertencente à ordem dos roedores, típica de regiões tropicais, sendo o seu conhecimento anatômico detalhado muito importante para sua conservação, experimentação e comercialização, pois ainda são escassos na literatura os trabalhos sobre morfologia de espécies selvagens. Macroscopicamente, o pâncreas da paca é formado por lóbulos, organizados em ramificações difusas, e, microscopicamente, tal órgão possui uma camada de tecido conjuntivo frouxo, a partir da qual partem septos, que dividem a glândula em lóbulos, compostos de ácinos e ilhotas pancreáticas.