Abstract
Certain neuron types fire spontaneously at high rates, an ability that is crucial for their function in brain circuits. The spontaneously active GABAergic neurons of the substantia nigra pars reticulata (SNr), a major output of the basal ganglia, provide tonic inhibition of downstream brain areas. A depolarizing 'leak' current supports this firing pattern, but its molecular basis remains poorly understood. To understand how SNr neurons maintain tonic activity, we used single-cell RNA sequencing to determine the transcriptome of individual mouse SNr neurons. We discovered that SNr neurons express the sodium leak channel, NALCN, and that SNr neurons lacking NALCN have impaired spontaneous firing. In addition, NALCN is involved in the modulation of excitability by changes in glycolysis and by activation of muscarinic acetylcholine receptors. Our findings suggest that disruption of NALCN could impair the basal ganglia circuit, which may underlie the severe motor deficits in humans carrying mutations in NALCN.
DOI:http://dx.doi.org/10.7554/eLife.15271.001
Some neurons in the brain produce electrical signals (or “fire”) spontaneously, without receiving any other signals from the senses or from other neurons. This spontaneous activity has a number of important roles. For example, in a part of the brain known as the substantia nigra pars reticulata (SNr), spontaneously active neurons frequently produce electrical signals that reduce electrical activity in other brain areas.
A current of positively charged ions constantly flows into the spontaneously active SNr neurons and enables them to fire constantly. Ions enter neurons through proteins called ion channels that are embedded in the surface of the neuron. Like all proteins, ion channels are made by “transcribing” genes to form molecules of RNA that are then “translated” to produce the basic sequence of the protein.
Lutas et al. have now used single-cell RNA sequencing to study SNr neurons from mice and investigate which ion channel the positive ion current flows through. The RNA sequences revealed that the neurons have the gene for an ion channel known as NALCN. Recordings of the firing rate of neurons in slices of mouse brain showed that SNr neurons without this channel did not fire as often as SNr neurons with the channel. In addition, neurotransmitters (chemicals that alter the ability of neurons to fire) and changes in cell metabolism had less of an effect on the firing rate of SNr neurons that lacked the NALCN channel than they do on normal neurons.
These findings may help explain why people with mutations in the NALCN gene have movement disorders, as the substantia nigra pars reticulata plays an important role in orchestrating complex movements. Future work is now needed to understand how a change in NALCN activity affects the other brain areas that SNr neurons connect to.
DOI:http://dx.doi.org/10.7554/eLife.15271.002
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