Thawed human hepatocytes in primary culture

In drug metabolism studies, isolated and cultured human hepatocytes provide a useful model for overcoming the difficulty of extrapolating from animal data. In vitro studies with human hepatocytes are scarce because of the lack of livers and suitable methods of storage. After developing a new method for cryopreservation of human hepatocytes, we evaluated the effects of deep freezing storage on their viability, morphology, and functional and toxicological capabilities in classical culture conditions. Freshly isolated human hepatocytes were cryopreserved in medium containing 10% Me2SO and 20% fetal calf serum, using a Nicool ST20 programmable freezer (-1.9 degrees C/min for 18 min and -30 degrees C/min for 4 min). Cells were stored in liquid nitrogen. Viability of thawed human hepatocytes was 50-65% as assessed by erythrosin exclusion test prior to purification on a Percoll density gradient. Morphological criteria showed that thawed human hepatocytes require an adaptation period to the medium after seeding. Functional assessments showed that human hepatocytes which survive freezing and thawing preserve their protein synthesis capabilities and are able to secrete a specific protein, anionic peptidic fraction, which is involved in the hepatic uptake of bile-destined cholesterol. We then studied Midazolam biotransformation to test metabolic functions, and erythromycin toxicity by Neutral Red test (cell viability) and 3-(4,5-dimethylthiazol-2-yl)-diphenyl tetrazolium bromide test (cell metabolism). All of these experiments indicated that thawed human hepatocytes should be used 38 h after seeding for optimum recovery of their functions: membrane integrity, protein synthesis, and stabilization of drug metabolism enzymes.

A Novel Multiplex Mycotoxin Surface-Enhanced Raman Spectroscopy Immunoassay Using Functional Gold Nanotags on a Silica Photonic Crystal Microsphere Biochip

A novel multiplex mycotoxin surface-enhanced Raman spectroscopy (SERS) immunoassay was established for the first time on different artificial antigen-modified silica photonic crystal microspheres (SPCMs), which can be integrated into a biochip array to achieve multiplex detection using corresponding antibody-functionalized gold nanoparticles (AuNPs) as the SERS nanotag. The unique optical structure of SPCMs is helpful to find the detection spots easily, accommodate a large amount of probe molecules, and enhance the Raman signal intensity. Such enhancement was confirmed by the simulation result, showing the electric field enhancing effect in SPCMs with AuNPs being 7 times. A competitive SERS immunoassay was established using antigen-modified SPCMs and mycotoxins to compete for binding antibody-functionalized SERS nanotags, displaying broad linear detection ranges of 0.001-0.1 ng/mL for aflatoxin B₁ (AFB₁), 0.01-10 ng/mL for ochratoxin A (OTA), and 0.001-0.1 ng/mL for zearalenone (ZEN) and low detection limits of 0.82 pg/mL for AFB₁, 1.43 pg/mL for OTA, and 1.00 pg/mL for ZEN. In the spiked cereal samples, recovery rates of the method were measured in the range of 70.35-118.04% for the three mycotoxins, which was in agreement with that of the traditional enzyme-linked immunosorbent assay method. The SERS immunoassay for mycotoxin detection also showed high specificity and good repeatability and reproducibility. The new microsphere-based SERS immunoassay biochip only requires a one-step reaction and overcomes the disadvantages of fluorescence and chemiluminescence background signals. The work paves the way for further developing SERS-based microsphere suspension arrays for new targets.

High-throughput, highly sensitive and rapid SERS detection of Escherichia coli O157:H7 using aptamer-modified Au@macroporous silica magnetic photonic microsphere array

The aim of this research was to develop a simple, rapid, sensitive, high-throughput detection method for foodborne Escherichia coli (E. coli) O157:H7 based on the aptamer-modified gold nanoparticles@macroporous magnetic silica photonic microsphere (Au@MMSPM). Such Au@MMSPM array system for E. coli O157:H7 not only integrated sample pretreatment with rapid detection, but also showed highly enhanced effect to develop a highly sensitive SERS assay. The established SERS assay platform gave a wide linear detection range (10-10⁶ CFU/mL) and low limit of detection (2.20 CFU/mL) for E. coli O157:H7. The whole analysis time including sample pretreatment and detection was 110 min. This SERS-based assay platform provided a new high-throughput, highly sensitive and fast detection technology for monitoring E. coli O157:H7 in real samples from the fields of food industry, medicine and environment.

Three-Dimensional Ordered Macroporous Magnetic Inverse Photonic Crystal Microsphere-Based Molecularly Imprinted Polymer for Selective Capture of Aflatoxin B1

Development of an efficient detection method to monitor residual mycotoxins in food is very important to ensure food safety, but the complex food matrix seriously affects the detection sensitivity and accuracy. Here, using a three-dimensional ordered macroporous magnetic inverse photonic crystal microsphere (MPCM) as the supporting material, a molecularly imprinted polymer (MIP) that can selectively recognize aflatoxin B₁ (AFB₁) was synthesized through the dummy template imprinting strategy. The MPCM@MIP prepared by employing 5,7-dimethoxycoumarin as the template and methacrylic acid as the functional monomer displayed selectivity toward AFB₁ (imprinting factor of 1.5) and could be used as a solid-phase extraction material. By coupling with high-performance liquid chromatography, an analytical method targeting AFB₁ was established and displayed a wide linear range of 5-1000 ng/mL with a low detection limit of 0.4 ng/mL. The method showed a good recovery rate of 73-92% in AFB₁-spiked soy sauce and vinegar samples. Moreover, the MPCM@MIP could be separated from the sample solution easily because of its magnetic performance, displaying a promising future not only in the enrichment of AFB₁ to improve the detection sensitivity and accuracy but also in the removal of AFB₁ from food and environmental samples.

Simultaneous, Label-Free and High-throughput SERS Detection of Multiple Pesticides on Ag@Three-Dimensional Silica Photonic Microsphere Array

Rapid identification and quantitative simultaneous analysis for multiple pesticide in real samples based on surface-enhanced Raman spectroscopy (SERS) is still a challenge because of sample complexity, reproducibility, and stability of SERS substrate. With use of colloidal silver nanoparticles loaded three-dimensional (3D) silica photonic microspheres (SPMs) array as the analytical platform, a SERS-based array assay for multiple pesticides was developed in this work. The silver nanoparticles were fixed into the gaps formed by the self-assembled nanospheres of the 3D SPMs to produce "hot spots", on which the Raman enhanced effect was up to 9.86 × 10⁷ and the maximum electric field enhancement effect reached to 9.75 times, ensuring the target pesticides on the surface of the SERS-substrate integrated SPM can be detected sensitively. Using 2,4-dichlorophenoxyacetic acid (2,4-D), glyphosate, and imidacloprid as the testing pesticides, the label-free and high-throughput SERS assay for simultaneous detection of the pesticides was established, giving good linear detection ranges (0.1-204.8 μg/mL for 2,4-D, 0.3-247.9 μg/mL for glyphosate, and 0.2-204.8 μg/mL for imidacloprid) and low detection limits (3.03 ng/mL for 2,4-D, 3.14 ng/mL for glyphosate, and 8.82 ng/mL for imidacloprid). The spiked recovery rates in the real samples were measured in the range of 82-112%, which was consistent with that of the classical standard methods. The label-free 3D SERS array analytical platform provides a powerful tool for high-throughput and low-cost screening of multiple pesticide residues in real samples.

Label-Free Fluorescence Quantitative Detection Platform on Plasmonic Silica Photonic Crystal Microsphere Array

We have demonstrated the proof-of-concept of a label-free fluorescence quantitative detection platform based on gold nanoparticle (AuNP) enhancement intrinsic fluorescence of protein on the silica photonic crystal microsphere (SPCM) array. The label-free one-step competitive fluorescence immunoassay protocol has been proposed on the surface of the SPCM. Aflatoxin B₁ (AFB₁) as a model molecule was detected by the newly established method. AFB₁-bovine serum albumin and monoclonal antibodies (Abs) of anti-AFB₁ have been immobilized on the surfaces of SPCMs and AuNPs, respectively. AuNPs remarkably enhanced the intrinsic fluorescence of artificial antigens on the surface of the SPCM at near UV excitation. The simulation of electric field distribution showed that the maximum value of the near-field enhancement |E/E₀| of the SPCM with AuNPs could reach 20. The label-free fluorescence enhancement effect comes from the synergistic effects of photonic crystal effect and AuNP plasmon effect. Such a label-free fluorescence detection method can provide a linear detection range from 0.1 to 10 ng/mL with a limit of detection of 0.025 ng/mL and good specificity for AFB₁. The recovery rates in the spiked cereal samples were measured in the range of 84.07 ± 5.71%-101.02 ± 5.13%, which were consistent with that of the traditional enzyme linked immunosorbent assay method. The label-free detection platform displays great application potential in biology, medicine, agriculture, food industry, chemical industry, energy source, and environmental protection.

Advances in functional photonic crystal materials for the analysis of chemical hazards in food

Chemical contaminants in food generally include natural toxins (mycotoxins, animal toxins, and phytotoxins), pesticides, veterinary drugs, environmental pollutants, heavy metals, and illegal additives. Developing a low-cost, simple, and rapid detection technology for harmful substances in food is urgently needed. Analytical methods based on different advanced materials have been developed into rapid detection methods for food samples. In particular, photonic crystal (PC) materials have a unique surface periodic structure, structural color, a large surface area, easy integration with photoelectronic and magnetic devices which have great advantages in the development of rapid, low-cost, and highly sensitive analytical methods. This review focuses on the PC materials in the view of their fabrication processes, functionalized recognition components for the specific recognition of hazardous substances, and applications in the separation, enrichment, and detection of chemical hazards in real samples. Suspension array based on three-dimensional PC microspheres by droplet-based microfluidic assembly is a great promising and powerful platform for food safety detection fields. For the PCs selective analysis, biological antibodies, aptamers, and molecularly imprinted polymers (MIPs) could be modified for specific recognition of target substances, particularly MIPs because of their low-cost and easy mass production. Based on these functional PCs, various toxic and hazardous substances can be selectively enriched or recognized in real samples and further quantified in combination of liquid chromatography method or optical detection methods including fluorescence, chemiluminescence, and Raman spectroscopy.

High-performance molecularly imprinted polymers grafted magnetic photonic crystal microspheres for selective enrichment of Ochratoxin A

Development of selective enrichment materials for the accurate analysis of ochratoxin a (OTA) in environmental and food samples is an effective way to protect human health. Here, a molecularly imprinted polymer (MIP) known as plastic antibody was synthesized onto the magnetic inverse opal photonic crystal microsphere (MIPCM) using a low-cost dummy template imprinting strategy targeting OTA. The MIP@MIPCM exhibited ultrahigh selectivity with an imprinting factor of 130, high specificity with cross-reactivity factors of 3.3-10.5, and large adsorption capacity of 60.5 μg/mg. Such MIP@MIPCM was used for selective capture of OTA in real samples which was quantified in combination with high-performance liquid chromatography, giving a wide linear detection range of 5-20,000 ng/mL, a detection limit of 0.675 ng/mL, and good recovery rates of 84-116%. Moreover, the MIP@MIPCM can be produced simply and rapidly and is very stable under different environmental conditions and easy to store and transport, so it is an ideal substitute of biological antibody modified materials for the selective enrichment of OTA in real samples.

Abstract P2-09-34: An mRNA-based method to measure PI3K activity in cancer tissue using a computational pathway model to assess FOXO transcriptional activity

Introduction

The PI3K signaling pathway is frequently active in breast cancer, and therapeutic inhibitors have been developed. However, it has proven difficult to correctly predict treatment response. We developed a method that measures functional activity of the PI3K pathway using a computational model that infers transcriptional FOXO activity (downstream of PI3K) from expression levels of its target genes. In principle, PI3K pathway activity inhibits transcriptional FOXO activity, hence inactive FOXO is indicative of active PI3K.

Method

We developed a knowledge-based computational model to infer transcriptional FOXO activity from cancer tissue mRNA expression levels, using a Bayesian network approach (Verhaegh et al., Cancer Res 2014). Model calibration was done on microarray data from HUVEC cells with inducible FOXO3.A3-ER (GSE16573).

Results

The FOXO model was biologically validated with in-house microarray data from independent breast cancer cell lines. ER positive, PIK3CAE545K mutant MCF7 and triple negative MDA-MB-231 cells were stably transduced with a doxycycline inducible FOXO3.A3 expression vector, allowing controlled induction of FOXO3 protein activity. FOXO activity was determined to be low in untreated and 20% FBS treated MCF7 cells, and high after doxycycline, LY294002, and combination treatment.

Next, we tested our FOXO model on independent MCF7, BT-20 and MDA-MB-453 cell line data treated with EGFR inhibitor erlotinib (GSE30516), showing an increase of FOXO activity upon treatment, due to reduced PI3K pathway activity (combined Wilcox rank sum test p = 7.8x10−5).

We further analyzed independent publicly available data from breast cancer patients. FOXO was generally active in healthy breast tissue. Compared to healthy breast tissue, FOXO activity was higher in normal-like and luminal A breast cancer samples (p = 1.9x10−6 and 0.025, resp.), and lower in luminal B samples (p = 4.2x10−7).

In addition to the above mechanism for regulating FOXO activity, literature suggests that FOXO can also be activated by cellular oxidative stress, which is often associated with PI3K signaling. This may be assessed using expression levels of the FOXO target gene SOD2, which is differentially expressed between the two FOXO activity modes, and whose function is to reduce oxidative stress. Public data shows an increasing percentage of elevated SOD2 levels among FOXO-active samples with increasing breast cancer aggressiveness: 7% in normal-like, 5% in luminal A, 18% in luminal B, 31% in HER2-enriched and 74% in basal like breast cancer.

Conclusion

Our computational model to measure PI3K activity using FOXO target gene mRNA levels was able to measure increased FOXO activity in multiple cancer cell lines after PI3K inhibition. FOXO activity was measured high in healthy breast tissue and in normal-like and luminal A breast cancer, and lower in luminal B, indicating PI3K activity in the latter group. In more aggressive subtypes, FOXO activity was increasingly accompanied by high SOD2 expression, suggesting oxidative stress with associated PI3K activity as the FOXO activating mechanism.

Clinical utility for improved response prediction and monitoring of PI3K pathway inhibitors is being investigated with clinical partners.

Citation Format: Verhaegh W, van Ooijen H, Hornsveld M, Dam C, Eijkelenboom A, Dou M, Velter R, Burgering B, van de Stolpe A. An mRNA-based method to measure PI3K activity in cancer tissue using a computational pathway model to assess FOXO transcriptional activity [abstract]. In: Proceedings of the 2017 San Antonio Breast Cancer Symposium; 2017 Dec 5-9; San Antonio, TX. Philadelphia (PA): AACR; Cancer Res 2018;78(4 Suppl):Abstract nr P2-09-34.

Molecularly imprinted Fe3O4 nanoparticles-based magnetic 3D photonic crystal microspheres for specific adsorption of aflatoxin B1 in grains

Aflatoxin B1 (AFB1) is the major toxic mycotoxin that contaminates grains at trace levels, necessitating the development of an efficient and simple extraction method to enrich it in samples. Here, magnetic molecularly imprinted Fe3O4 nanoparticles (MMIPs) were first synthesized by employing 5,7-dimethoxy coumarin as the template and methacrylic acid combined with styrene as the functional monomers. These MMIPs exhibited excellent selective recognition capabilities for AFB1, based on which, a novel molecularly imprinted magnetic inverse opal photonic crystal microsphere (MIP@MIPCM) was fabricated via a droplet-based microfluidic self-assembly technique. The MIP@MIPCMs enabled specific recognition of AFB1 and were used as an extraction material, achieving a binding capacity of 842.7 ng/mg within 20 min. Coupled with high-performance liquid chromatography (HPLC), a sensitive and accurate analytical method was established for AFB1 detection with a detection limit of 0.35 μg/kg and recovery rates of 90-109 % in real samples.