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Buse M, Cheng M, Jankowski V, Lellig M, Sterzer V, Strieder T, Leuchtle K, Martin IV, Seikrit C, Brinkkoettter P, Crispatzu G, Floege J, Boor P, Speer T, Kramann R, Ostendorf T, Moeller MJ, Costa IG, Stamellou E. Lineage tracing reveals transient phenotypic adaptation of tubular cells during acute kidney injury. iScience 2024; 27:109255. [PMID: 38444605 PMCID: PMC10914483 DOI: 10.1016/j.isci.2024.109255] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2023] [Revised: 12/05/2023] [Accepted: 02/13/2024] [Indexed: 03/07/2024] Open
Abstract
Tubular injury is the hallmark of acute kidney injury (AKI) with a tremendous impact on patients and health-care systems. During injury, any differentiated proximal tubular cell (PT) may transition into a specific injured phenotype, so-called "scattered tubular cell" (STC)-phenotype. To understand the fate of this specific phenotype, we generated transgenic mice allowing inducible, reversible, and irreversible tagging of these cells in a murine AKI model, the unilateral ischemia-reperfusion injury (IRI). For lineage tracing, we analyzed the kidneys using single-cell profiling during disease development at various time points. Labeled cells, which we defined by established endogenous markers, already appeared 8 h after injury and showed a distinct expression set of genes. We show that STCs re-differentiate back into fully differentiated PTs upon the resolution of the injury. In summary, we show the dynamics of the phenotypic transition of PTs during injury, revealing a reversible transcriptional program as an adaptive response during disease.
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Affiliation(s)
- Marc Buse
- Division of Nephrology and Clinical Immunology, RWTH Aachen University, Aachen, Germany
| | - Mingbo Cheng
- Institute for Computational Genomics, RWTH Aachen University Hospital, Aachen, Germany
| | - Vera Jankowski
- Institute for Molecular Cardiovascular Research, RWTH Aachen University Hospital, Aachen, Germany
| | - Michaela Lellig
- Institute for Molecular Cardiovascular Research, RWTH Aachen University Hospital, Aachen, Germany
| | - Viktor Sterzer
- Division of Nephrology and Clinical Immunology, RWTH Aachen University, Aachen, Germany
| | - Thiago Strieder
- Division of Nephrology and Clinical Immunology, RWTH Aachen University, Aachen, Germany
| | - Katja Leuchtle
- Division of Nephrology and Clinical Immunology, RWTH Aachen University, Aachen, Germany
| | - Ina V. Martin
- Division of Nephrology and Clinical Immunology, RWTH Aachen University, Aachen, Germany
| | - Claudia Seikrit
- Division of Nephrology and Clinical Immunology, RWTH Aachen University, Aachen, Germany
| | - Paul Brinkkoettter
- Department II of Internal Medicine and Centre for Molecular Medicine, University of Cologne, Faculty of Medicine and University Hospital Cologne, Cologne, Germany
| | - Giuliano Crispatzu
- Department II of Internal Medicine and Centre for Molecular Medicine, University of Cologne, Faculty of Medicine and University Hospital Cologne, Cologne, Germany
| | - Jürgen Floege
- Division of Nephrology and Clinical Immunology, RWTH Aachen University, Aachen, Germany
| | - Peter Boor
- Division of Nephrology and Clinical Immunology, RWTH Aachen University, Aachen, Germany
- Institute of Pathology, University Hospital RWTH Aachen, Aachen, Germany
| | - Timotheus Speer
- Medical Clinic 4, Nephrology, University of Frankfurt und Goethe-University Frankfurt, Frankfurt am Main, Germany
| | - Rafael Kramann
- Division of Nephrology and Clinical Immunology, RWTH Aachen University, Aachen, Germany
- Institute of Experimental Medicine and Systems Biology, RWTH Aachen University, Aachen, Germany
- Department of Internal Medicine, Nephrology and Transplantation, Erasmus Medical Center, Rotterdam, the Netherlands
| | - Tammo Ostendorf
- Division of Nephrology and Clinical Immunology, RWTH Aachen University, Aachen, Germany
| | - Marcus J. Moeller
- Division of Nephrology and Clinical Immunology, RWTH Aachen University, Aachen, Germany
| | - Ivan G. Costa
- Institute for Computational Genomics, RWTH Aachen University Hospital, Aachen, Germany
| | - Eleni Stamellou
- Division of Nephrology and Clinical Immunology, RWTH Aachen University, Aachen, Germany
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Lellig M, Muñoz-Castañeda JR, Hermann J, Jankowski V. Abstract 125: Modified Angiotensin II Has Lower Vasoconstrictive Effect Than Angiotensin II. Hypertension 2022. [DOI: 10.1161/hyp.79.suppl_1.125] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Introduction:
The renin-angiotensin-aldosterone system (RAAS) is involved in the regulation of the blood pressure, water- and electrolyte balance. Pathophysiologically, this system is essential for the development and pathogenesis of both cardiovascular and renal diseases. Angiotensin II, a component of the RAAS, is the best-known vasoconstrictive and hypertensive peptide in the human organism. This peptide consists of 8 amino acids (asp-arg-val-tyr-ile-his-pro-phe). The first amino acid, aspartic acid, is converted to pyruvamide in the presence of pyridoxal-5’-phosphate (PLP). The influence of pyruvamide-angiotensin II on the blood pressure is not yet clarified.
Hypothesis:
We assessed the hypothesis that the transformation of angiotensin II to pyruvamide-angiotensin II by PLP leads to lowering the blood pressure.
Methods:
To clarify the influence of pyruvamide-angiotensin II on blood pressure
ex vivo
experiments were performed. Angiotensin II as well as pyruvamide-angiotensin II was tested in isolated perfused rat kidney. Further,
in vivo
experiments were performed. Wistar Kyoto rats (WKY) and Spontaneously Hypertensive Rats (SHR) were treated with angiotensin II in the absence and presence of PLP. The blood pressure was measured at different time.
Results:
Pressure in isolated perfused rat kidney increases by 50.11 ± 4.57 mmHg after injecting angiotensin II, whereas pressure increases by 38.40 ± 4.31 mmHg after injecting pyruvamide-angiotensin II. Data are shown as mean ± SEM of triplicate measurements from three independent experiments. Further, blood pressure of SHR treated with PLP decreases from 171/139 ± 5 mmHg to 129/98 ± 2 mmHg after three days. Blood pressure of WKY treated with angiotensin II increases to 167/133 ± 3 mmHg, whereas blood pressure of WKY treated with angiotensin II and PLP decreases to 129/99 ± 2 mmHg. Data are shown as mean ± SEM from five independent experiments.
Conclusions:
In conclusion, pyruvamide-angiotensin II has a lower vasoconstrictive effect than angiotensin II. Furthermore, PLP decreases the blood pressure in SHR and WKY.
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HERMANN J, Brehmer K, Lellig M, Thiele H, Jankowski J, Jankowski V. POS-369 NOVEL APPROACH FOR IN DEPTH ANALYSES OF KIDNEY SAMPLES - 3D IMAGE MODELING. Kidney Int Rep 2022. [DOI: 10.1016/j.ekir.2022.01.391] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022] Open
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Schunk SJ, Hermann J, Sarakpi T, Triem S, Lellig M, Hahm E, Zewinger S, Schmit D, Becker E, Möllmann J, Lehrke M, Kramann R, Boor P, Lipp P, Laufs U, März W, Reiser J, Jankowski J, Fliser D, Speer T, Jankowski V. Guanidinylated Apolipoprotein C3 (ApoC3) Associates with Kidney and Vascular Injury. J Am Soc Nephrol 2021; 32:3146-3160. [PMID: 34588185 PMCID: PMC8638400 DOI: 10.1681/asn.2021040503] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2021] [Accepted: 09/06/2021] [Indexed: 02/04/2023] Open
Abstract
BACKGROUND Coexistent CKD and cardiovascular diseases are highly prevalent in Western populations and account for substantial mortality. We recently found that apolipoprotein C-3 (ApoC3), a major constituent of triglyceride-rich lipoproteins, induces sterile systemic inflammation by activating the NOD-like receptor protein-3 (NLRP3) inflammasome in human monocytes via an alternative pathway. METHODS To identify posttranslational modifications of ApoC3 in patients with CKD, we used mass spectrometry to analyze ApoC3 from such patients and from healthy individuals. We determined the effects of posttranslationally modified ApoC3 on monocyte inflammatory response in vitro, as well as in humanized mice subjected to unilateral ureter ligation (a kidney fibrosis model) and in a humanized mouse model for vascular injury and regeneration. Finally, we conducted a prospective observational trial of 543 patients with CKD to explore the association of posttranslationally modified ApoC3 with renal and cardiovascular events in such patients. RESULTS We identified significant posttranslational guanidinylation of ApoC3 (gApoC3) in patients with CKD. We also found that mechanistically, guanidine and urea induce guanidinylation of ApoC3. A 2D-proteomic analysis revealed that gApoC3 accumulated in kidneys and plasma in a CKD mouse model (mice fed an adenine-rich diet). In addition, gApoC3 augmented the proinflammatory effects of ApoC3 in monocytes in vitro . In humanized mice, gApoC3 promoted kidney tissue fibrosis and impeded vascular regeneration. In CKD patients, higher gApoC3 plasma levels (as determined by mass spectrometry) were associated with increased mortality as well as with renal and cardiovascular events. CONCLUSIONS Guanidinylation of ApoC3 represents a novel pathogenic mechanism in CKD and CKD-associated vascular injury, pointing to gApoC3 as a potential therapeutic target.
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Affiliation(s)
- Stefan J. Schunk
- Nephrology and Hypertension, Department of Internal Medicine IV, Saarland University, Homburg/Saar, Germany
| | - Juliane Hermann
- Institute of Molecular Cardiovascular Research, RWTH Aachen University Hospital, Aachen, Germany
| | - Tamim Sarakpi
- Nephrology and Hypertension, Department of Internal Medicine IV, Saarland University, Homburg/Saar, Germany
| | - Sarah Triem
- Translational Cardio-Renal Medicine, Saarland University, Homburg/Saar, Germany
| | - Michaela Lellig
- Institute of Molecular Cardiovascular Research, RWTH Aachen University Hospital, Aachen, Germany
| | - Eunsil Hahm
- Department of Internal Medicine, Rush University Medical Center, Chicago, Illinois, USA
| | - Stephen Zewinger
- Nephrology and Hypertension, Department of Internal Medicine IV, Saarland University, Homburg/Saar, Germany
| | - David Schmit
- Nephrology and Hypertension, Department of Internal Medicine IV, Saarland University, Homburg/Saar, Germany
| | - Ellen Becker
- Translational Cardio-Renal Medicine, Saarland University, Homburg/Saar, Germany
| | - Julia Möllmann
- Department of Cardiology, RWTH Aachen University Hospital, Aachen, Germany
| | - Michael Lehrke
- Department of Cardiology, RWTH Aachen University Hospital, Aachen, Germany
| | - Rafael Kramann
- Department of Nephrology, RWTH Aachen University Hospital, Aachen, Germany
| | - Peter Boor
- Institute of Pathology, RWTH Aachen University Hospital, Aachen, Germany
| | - Peter Lipp
- Präklinisches Zentrum für Molekulare Signalverarbeitung (PZMS), Institute of Cell Biology, Saarland University, Homburg/Saar, Germany
| | - Ulrich Laufs
- Department of Cardiology, University Hospital Leipzig, Leipzig, Germany
| | - Winfried März
- Vth Department of Medicine, University Heidelberg, Mannheim Medical Faculty, Mannheim, Germany
- Clinical Institute of Medical and Laboratory Diagnostics, Medical University Graz, Graz, Austria
- Synlab Academy, Synlab Holding, Mannheim, Germany
| | - Jochen Reiser
- Department of Internal Medicine, Rush University Medical Center, Chicago, Illinois, USA
| | - Joachim Jankowski
- Institute of Molecular Cardiovascular Research, RWTH Aachen University Hospital, Aachen, Germany
- School for Cardiovascular Diseases, Maastricht University, Maastrich, The Netherlands
| | - Danilo Fliser
- Nephrology and Hypertension, Department of Internal Medicine IV, Saarland University, Homburg/Saar, Germany
| | - Thimoteus Speer
- Nephrology and Hypertension, Department of Internal Medicine IV, Saarland University, Homburg/Saar, Germany
- Translational Cardio-Renal Medicine, Saarland University, Homburg/Saar, Germany
| | - Vera Jankowski
- Institute of Molecular Cardiovascular Research, RWTH Aachen University Hospital, Aachen, Germany
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Hermann J, Brehmer K, Jankowski V, Lellig M, Hohl M, Mahfoud F, Speer T, Schunk SJ, Tschernig T, Thiele H, Jankowski J. Registration of Image Modalities for Analyses of Tissue Samples Using 3D Image Modelling. Proteomics Clin Appl 2021; 15:e2170024. [PMID: 34117729 DOI: 10.1002/prca.202170024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Lellig M, Brehmer K, Hohl M, Speer T, Schunk S, Thiele H, Jankowski J, Jankowski V, Hermann J. MO435MULTIMODAL IMAGING FOR MOLECULAR TISSUE ANALYSIS. Nephrol Dial Transplant 2021. [DOI: 10.1093/ndt/gfab088.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract
Background and Aims
MALDI mass spectrometric imaging (MALDI MSI) is a powerful histologic tool for the analysis of biomolecules in tissue samples. MALDI MSI measurements result in a high sensitivity and accuracy of spatial distribution of biomolecules in tissue samples. For more detailed analysis of MALDI MSI data and correlation between the molecular and microscopic levels, a combination of MALDI MSI data and histological staining is essential. By combining MALDI MSI data and histological data, much more information are obtained than by analyzing both methods individually. Therefore, MALDI MSI datasets and histological staining were fused to a 3D model presenting a biomolecule distribution of the whole organ and provides more information than a single tissue section. We have developed, established and validated an algorithm for an automatic registration of MALDI data with different histological image data for cross-process evaluation of multimodal datasets to create 3D models. This multimodal imaging approach simplifies and improves molecular analyses of tissue samples in clinical research and diagnosis.
Method
The datasets for fusion and creation of a 3D model consist of mass spectrometric data, histological and immunohistochemical staining methods. Histological tissue sections of a whole mouse kidney were prepared. For MALDI MSI data, organ sections were analyzed by using a Rapiflex mass-spectrometer.
Results
A mathematical registration was used to achieve a perfect superposition of the individual histological sections of mass spectrometric data. It is feasible to combine mass spectrometric data, histological and immunohistochemical datasets in high numbers and reconstruct the measured mouse kidney. By using different imaging methods, a variety of information about tissue structure as well as tissue changes and protein distributions can be obtained. The fusion of the data also offers a virtual incision of the organ from arbitrary angle and level. The algorithms are adapted to take the data fusion automatically offering a high-throughput approach for clinical diagnostics and the possibility to involved artificial intelligence in its interpretation in research.
Conclusion
A successful fusion of MALDI MSI data and different histological and immunohistochemical staining datasets of a whole organ is performed.
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Affiliation(s)
- Michaela Lellig
- Institute for Molecular Cardiovascular Research (IMCAR), RWTH Aachen University, Aachen, Germany
| | - Kai Brehmer
- Institute of Mathematics and Image Computing, University of Lübeck, Lübeck, Germany
| | - Mathias Hohl
- Clinic for Internal Medicine-Cardiology, Angiology and Internal Intensive Care Medicine, Saarland University, Homburg, Germany
| | - Thimoteus Speer
- Department of Internal Medicine IV, Nephrology and Hypertension, Saarland University Hospital, Homburg, Germany
| | - Stefan Schunk
- Department of Internal Medicine IV, Nephrology and Hypertension, Saarland University Hospital, Homburg, Germany
| | - Herbert Thiele
- Institute of Mathematics and Image Computing, University of Lübeck, Lübeck, Germany
| | - Joachim Jankowski
- Institute for Molecular Cardiovascular Research (IMCAR), RWTH Aachen University, Aachen, Germany
- School for Cardiovascular Diseases (CARIM), Maastricht University, Maastricht, The Netherlands
- European Uremic Toxin Work Group (EUTox)
| | - Vera Jankowski
- Institute for Molecular Cardiovascular Research (IMCAR), RWTH Aachen University, Aachen, Germany
- European Uremic Toxin Work Group (EUTox)
| | - Juliane Hermann
- Institute for Molecular Cardiovascular Research (IMCAR), RWTH Aachen University, Aachen, Germany
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Schunk S, Hermann J, Sarah T, Lellig M, Hahm E, Boor P, Reiser J, Jankowski J, Fliser D, Jankowski V, Speer T. MO451GUANIDINYLATED APOLIPOPROTEIN C3 (APOC3) A NOVEL PLAYER IN CKD AND CKD-ASSOCIATED CARDIOVASCULAR DISEASES. Nephrol Dial Transplant 2021. [DOI: 10.1093/ndt/gfab090.0013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Abstract
Background and Aims
Cardiovascular diseases (CVD) and chronic kidney diseases (CKD) are highly prevalent in Western populations and account for a substantial proportion of mortality. We found that apolipoprotein C-3 (ApoC3), a constituent of triglyceride-rich lipoproteins, induces alternative NLRP3 inflammasome activation in human monocytes and thus causes sterile inflammation. The aim of the present study was to screen ApoC3 for the presence of posttranslational protein modifications and to assess its relevance in vitro, in vivo, as well as in a prospective cohort of CKD patients.
Method
ApoC3 was subjected to proteomic analysis. The proinflammatory properties of ApoC3 were assessed in human monocytes and in humanized mice. Moreover, posttranslationally modified ApoC3 was quantified in prospective cohort of 543 patients with various etiologies of CKD and linked to kidney and cardiovascular outcomes.
Results
We identified posttranslational guanidinylation of lysine residues of ApoC3 (gApoC3) in patients after acute myocardial infarction and in patients with CKD. gApoC3 accumulates in kidneys and hearts after injury as determined by 2D-proteomic analyses. In human monocytes, guanidinylation enhanced the binding of ApoC3 to the cell surface and exerted substantially stronger pro-inflammatory effects as compared native ApoC3. In humanized mice, gApoC3 strongly induced kidney fibrosis and abolished the regeneration after vascular injury. In a prospective clinical trial of 543 patients, higher gApoC3 blood levels as determined by mass spectrometry were associated with increased mortality as well as cardiovascular and renal events during a long-term follow-up.
Conclusion
The present study provides evidence from preclinical models and a prospective clinical trial that gApoC3 plays an important role in the development of organ injury in patients with CKD, myocardial infarction and other clinical conditions. The clinical study represents one of the largest trials, in which the association of a specific PTM and clinically relevant outcomes was assessed. These findings highlight gApoC3 as a pathophysiologically relevant factor in development of organ dysfunction.
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Affiliation(s)
- Stefan Schunk
- Saarland University, Department of Internal Medicine IV, Homburg/Saar
| | | | - Triem Sarah
- Saarland University, Department of Internal Medicine IV, Homburg/Saar
| | | | - Eunsil Hahm
- Rush University Medical Center, Chicago, United States of America
| | - Peter Boor
- RWTH Aachen University Hospital, Aachen, Germany
| | - Jochen Reiser
- Rush University Medical Center, Chicago, United States of America
| | | | - Danilo Fliser
- Saarland University, Department of Internal Medicine IV, Homburg/Saar
| | | | - Thimoteus Speer
- Saarland University, Department of Internal Medicine IV, Homburg/Saar
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Hermann J, Raffetseder U, Lellig M, Jankowski J, Jankowski V. MO430MASS-SPECTROMETRIC IDENTIFICATION OF POST-TRANSLATIONAL GUANIDINYLATED PROTEINS IN THE CONTEXT OF SYSTEMIC LUPUS ERYTHEMATOSUS. Nephrol Dial Transplant 2021. [DOI: 10.1093/ndt/gfab088.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Abstract
Background and Aims
With continuous identification of post-translational modified isoforms of proteins, it is becoming increasingly clear that post-translational modifications limit or modify the biological functions of native proteins are majorly involved in development of various chronic disease. This is mostly due to technically advanced molecular identification and quantification methods, mainly based on mass spectrometry. Mass spectrometry has become one of the most powerful tools for the identification of lipids.
Method
In this study, we used sophisticated high-resolution mass-spectrometric methods to analyze the soluble ligand of receptor Notch-3, namely the Y-box protein (YB)-1, in serum from systemic lupus erythematosus (SLE) patients. In addition, kidneys of lupus-prone (MRL.lpr) mice were analyzed by mass-spectrometric imaging techniques to identify the underlying pathomechanisms. Serum YB-1 was isolated by chromatographic methods, afterwards digested by trypsin and analyzed by matrix assisted laser desorption/ionization mass spectrometry (MALDI-MS). The kidneys were fixed in paraffin, then kidney sections were deparaffinized, tryptic digested and analyzed by mass-spectrometric imaging techniques. Mass-spectrometry of extracellular YB-1 in SLE patient serum revealed post-translational guanidinylation of two lysine’s within the highly conserved cold shock domain (CSD) of the YB-1 protein (YB-1-2G). Patients with increased disease activity and those with active renal involvement (lupus nephritis, LN) had a higher degree of dual-guanidinylation within the CSD. Of note, at least one of these modifications was present in all analyzed LN patients, whereas single-guanidinylated YB-1 was present in only one and double modification in none of the control individuals. Mass-spectrometric imaging analyses specifically localized YB-1-2G and increases Notch-3 expression in kidney sections from MRL.lpr mice.
Results
The data from this study clearly demonstrate the high potential of high-resolution mass spectrometric methods as well as mass spectrometric imaging techniques to identify pathomechanisms of diseases like SLE/LN.
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Affiliation(s)
- Juliane Hermann
- Institute for Molecular Cardiovascular Research (IMCAR), RWTH-Aachen University, Aachen, Germany
| | - Ute Raffetseder
- Dep. of Nephrology and Clinical Immunology, RWTH-Aachen University, Aachen, Germany
| | - Michaela Lellig
- Institute for Molecular Cardiovascular Research (IMCAR), RWTH-Aachen University, Aachen, Germany
| | - Joachim Jankowski
- Institute for Molecular Cardiovascular Research (IMCAR), RWTH-Aachen University, Aachen, Germany
| | - Vera Jankowski
- Institute for Molecular Cardiovascular Research (IMCAR), RWTH-Aachen University, Aachen, Germany
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Hermann J, Noels H, Theelen W, Lellig M, Orth-Alampour S, Boor P, Jankowski V, Jankowski J. Correction to: Sample preparation of formalin-fixed paraffin-embedded tissue sections for MALDI-mass spectrometry imaging. Anal Bioanal Chem 2021; 413:3141. [PMID: 33733703 DOI: 10.1007/s00216-021-03276-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Affiliation(s)
- Juliane Hermann
- Institute for Molecular Cardiovascular Research, University Hospital RWTH Aachen, Pauwelsstraße 30, 52074, Aachen, Germany
| | - Heidi Noels
- Institute for Molecular Cardiovascular Research, University Hospital RWTH Aachen, Pauwelsstraße 30, 52074, Aachen, Germany
| | - Wendy Theelen
- Institute for Molecular Cardiovascular Research, University Hospital RWTH Aachen, Pauwelsstraße 30, 52074, Aachen, Germany
| | - Michaela Lellig
- Institute for Molecular Cardiovascular Research, University Hospital RWTH Aachen, Pauwelsstraße 30, 52074, Aachen, Germany
| | - Setareh Orth-Alampour
- Institute for Molecular Cardiovascular Research, University Hospital RWTH Aachen, Pauwelsstraße 30, 52074, Aachen, Germany
| | - Peter Boor
- Institute for Pathology, University Hospital RWTH Aachen, Pauwelsstraße 30, 52074, Aachen, Germany
| | - Vera Jankowski
- Institute for Molecular Cardiovascular Research, University Hospital RWTH Aachen, Pauwelsstraße 30, 52074, Aachen, Germany
| | - Joachim Jankowski
- Institute for Molecular Cardiovascular Research, University Hospital RWTH Aachen, Pauwelsstraße 30, 52074, Aachen, Germany. .,School for Cardiovascular Diseases, Maastricht University, Universiteitssingel 50, 6229, ER, Maastricht, The Netherlands.
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Hermann J, Brehmer K, Jankowski V, Lellig M, Hohl M, Mahfoud F, Speer T, Schunk SJ, Tschernig T, Thiele H, Jankowski J. Front Cover: Registration of Image Modalities for Analyses of Tissue Samples Using 3D Image Modelling. Proteomics Clin Appl 2021. [DOI: 10.1002/prca.202170011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Hermann J, Brehmer K, Jankowski V, Lellig M, Hohl M, Mahfoud F, Speer T, Schunk SJ, Tschernig T, Thiele H, Jankowski J. Registration of Image Modalities for Analyses of Tissue Samples Using 3D Image Modelling. Proteomics Clin Appl 2020; 15:e1900143. [PMID: 33142355 DOI: 10.1002/prca.201900143] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2020] [Revised: 10/21/2020] [Indexed: 12/20/2022]
Abstract
PURPOSE Biopsies are a diagnostic tool for the diagnosis of histopathological, molecular biological, proteomic, and imaging data, to narrow down disease patterns or identify diseases. Matrix-assisted laser desorption/ionization mass spectrometry imaging (MALDI MSI) provides an emerging state-of-the-art technique for molecular imaging of biological tissue. The aim of this study is the registration of MALDI MSI data sets and data acquired from different histological stainings to create a 3D model of biopsies and whole organs. EXPERIMENTAL DESIGN The registration of the image modalities is achieved by using a variant of the authors' global, deformable Schatten-q-Norm registration approach. Utilizing a connected-component segmentation for background removal followed by a principal-axis based linear pre-registration, the images are adjusted into a homogeneous alignment. This registration approach is accompanied by the 3D reconstruction of histological and MALDI MSI data. RESULTS With this, a system of automatic registration for cross-process evaluation, as well as for creating 3D models, is developed and established. The registration of MALDI MSI data with different histological image data is evaluated by using the established global image registration system. CONCLUSIONS AND CLINICAL RELEVANCE In conclusion, this multimodal image approach offers the possibility of molecular analyses of tissue specimens in clinical research and diagnosis.
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Affiliation(s)
- Juliane Hermann
- Institute for Molecular Cardiovascular Research IMCAR, University hospital, Pauwelsstraße 30, 52074, Aachen, Germany
| | - Kai Brehmer
- Institute of Mathematics and Image Computing, University of Lübeck, Maria-Goeppert-Straße 3, 23562, Lübeck, Germany
| | - Vera Jankowski
- Institute for Molecular Cardiovascular Research IMCAR, University hospital, Pauwelsstraße 30, 52074, Aachen, Germany
| | - Michaela Lellig
- Institute for Molecular Cardiovascular Research IMCAR, University hospital, Pauwelsstraße 30, 52074, Aachen, Germany
| | - Mathias Hohl
- Clinic for Internal Medicine-Cardiology, Angiology and Internal Intensive Care Medicine, Saarland University, Kirrberger Straße 100, Gebäude 41.1 (IMED), Homburg, Saarland, 66421, Germany
| | - Felix Mahfoud
- Clinic for Internal Medicine-Cardiology, Angiology and Internal Intensive Care Medicine, Saarland University, Kirrberger Straße 100, Gebäude 41.1 (IMED), Homburg, Saarland, 66421, Germany
| | - Timotheus Speer
- Department of Internal Medicine IV, Nephrology and Hypertension, Saarland University Hospital, Kirrberger Straße 100, Gebäude 40.2, Homburg, Saarland, 66421, Germany
| | - Stefan J Schunk
- Department of Internal Medicine IV, Nephrology and Hypertension, Saarland University Hospital, Kirrberger Straße 100, Gebäude 40.2, Homburg, Saarland, 66421, Germany
| | - Thomas Tschernig
- Cell Biology and Developmental Biology, Institute for Anatomy, Saarland University, Kirrberger Straße 100, Gebäude 61, Homburg, Saarland, 66421, Germany
| | - Herbert Thiele
- Fraunhofer Institute for Digital Medicine MEVIS, Maria-Goeppert-Straße 3, 23562, Lübeck, Germany
| | - Joachim Jankowski
- Institute for Molecular Cardiovascular Research IMCAR, University hospital, Pauwelsstraße 30, 52074, Aachen, Germany.,School for Cardiovascular Diseases, Maastricht University, Minderbroedersberg 4-6, 6211 LK, Maastricht, The Netherlands
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