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Cheng T, Chin PJ, Cha K, Petrick N, Mikailov M. Profiling the BLAST bioinformatics application for load balancing on high-performance computing clusters. BMC Bioinformatics 2022;23:544. [PMID: 36526957 PMCID: PMC9758941 DOI: 10.1186/s12859-022-05029-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Accepted: 10/31/2022] [Indexed: 12/23/2022]  Open
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Bhatt A, Roberts R, Chen X, Li T, Connor S, Hatim Q, Mikailov M, Tong W, Liu Z. DICE: A Drug Indication Classification and Encyclopedia for AI-Based Indication Extraction. Front Artif Intell 2021;4:711467. [PMID: 34409286 PMCID: PMC8366025 DOI: 10.3389/frai.2021.711467] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2021] [Accepted: 07/19/2021] [Indexed: 11/13/2022]  Open
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Liu Z, Chen X, Roberts R, Huang R, Mikailov M, Tong W. Unraveling Gene Fusions for Drug Repositioning in High-Risk Neuroblastoma. Front Pharmacol 2021;12:608778. [PMID: 33967751 PMCID: PMC8105087 DOI: 10.3389/fphar.2021.608778] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2020] [Accepted: 03/23/2021] [Indexed: 11/13/2022]  Open
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Liu Z, Roberts R, Shi T, Mikailov M, Tong W. Editorial: Advancing Genomics for Rare Disease Diagnosis and Therapy Development. Front Pharmacol 2020;11:598889. [PMID: 33101045 PMCID: PMC7546775 DOI: 10.3389/fphar.2020.598889] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2020] [Accepted: 09/07/2020] [Indexed: 11/15/2022]  Open
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Zhu L, Roberts R, Huang R, Zhao J, Xia M, Delavan B, Mikailov M, Tong W, Liu Z. Drug Repositioning for Noonan and LEOPARD Syndromes by Integrating Transcriptomics With a Structure-Based Approach. Front Pharmacol 2020;11:927. [PMID: 32676024 PMCID: PMC7333460 DOI: 10.3389/fphar.2020.00927] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2019] [Accepted: 06/08/2020] [Indexed: 01/24/2023]  Open
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Wen Z, Liang Y, Hao Y, Delavan B, Huang R, Mikailov M, Tong W, Li M, Liu Z. Drug-Induced Rhabdomyolysis Atlas (DIRA) for idiosyncratic adverse drug reaction management. Drug Discov Today 2019;24:9-15. [PMID: 29902520 PMCID: PMC7050640 DOI: 10.1016/j.drudis.2018.06.006] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2018] [Revised: 05/23/2018] [Accepted: 06/06/2018] [Indexed: 01/06/2023]
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Mikailov M, Luo FJ, Barkley S, Valleru L, Whitney S, Liu Z, Thakkar S, Tong W, Petrick N. Scaling bioinformatics applications on HPC. BMC Bioinformatics 2017;18:501. [PMID: 29297287 PMCID: PMC5751788 DOI: 10.1186/s12859-017-1902-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]  Open
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Qiu J, Luo X, Bai S, Tian H, Mikailov M. WWR: An R package for analyzing prioritized outcomes. ACTA ACUST UNITED AC 2017. [DOI: 10.7243/2053-7662-5-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Luo H, Chen J, Shi L, Mikailov M, Zhu H, Wang K, He L, Yang L. DRAR-CPI: a server for identifying drug repositioning potential and adverse drug reactions via the chemical-protein interactome. Nucleic Acids Res 2011;39:W492-8. [PMID: 21558322 PMCID: PMC3125745 DOI: 10.1093/nar/gkr299] [Citation(s) in RCA: 146] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]  Open
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