The PREDICTS database: a global database of how local terrestrial biodiversity responds to human impacts

Biodiversity continues to decline in the face of increasing anthropogenic pressures such as habitat destruction, exploitation, pollution and introduction of alien species. Existing global databases of species’ threat status or population time series are dominated by charismatic species. The collation of datasets with broad taxonomic and biogeographic extents, and that support computation of a range of biodiversity indicators, is necessary to enable better understanding of historical declines and to project – and avert – future declines. We describe and assess a new database of more than 1.6 million samples from 78 countries representing over 28,000 species, collated from existing spatial comparisons of local-scale biodiversity exposed to different intensities and types of anthropogenic pressures, from terrestrial sites around the world. The database contains measurements taken in 208 (of 814) ecoregions, 13 (of 14) biomes, 25 (of 35) biodiversity hotspots and 16 (of 17) megadiverse countries. The database contains more than 1% of the total number of all species described, and more than 1% of the described species within many taxonomic groups – including flowering plants, gymnosperms, birds, mammals, reptiles, amphibians, beetles, lepidopterans and hymenopterans. The dataset, which is still being added to, is therefore already considerably larger and more representative than those used by previous quantitative models of biodiversity trends and responses. The database is being assembled as part of the PREDICTS project (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems – http://www.predicts.org.uk). We make site-level summary data available alongside this article. The full database will be publicly available in 2015.

The database of the PREDICTS (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems) project

The PREDICTS project-Projecting Responses of Ecological Diversity In Changing Terrestrial Systems (www.predicts.org.uk)-has collated from published studies a large, reasonably representative database of comparable samples of biodiversity from multiple sites that differ in the nature or intensity of human impacts relating to land use. We have used this evidence base to develop global and regional statistical models of how local biodiversity responds to these measures. We describe and make freely available this 2016 release of the database, containing more than 3.2 million records sampled at over 26,000 locations and representing over 47,000 species. We outline how the database can help in answering a range of questions in ecology and conservation biology. To our knowledge, this is the largest and most geographically and taxonomically representative database of spatial comparisons of biodiversity that has been collated to date; it will be useful to researchers and international efforts wishing to model and understand the global status of biodiversity.

Diurnal Human Activity and Introduced Species Affect Occurrence of Carnivores in a Human-Dominated Landscape

Diurnal human activity and domestic dogs in agro-forestry mosaics should theoretically modify the diurnal habitat use patterns of native carnivores, with these effects being scale-dependent. We combined intensive camera trapping data with Bayesian occurrence probability models to evaluate both diurnal and nocturnal patterns of space use by carnivores in a mosaic of land-use types in southern Chile. A total of eight carnivores species were recorded, including human-introduced dogs. During the day the most frequently detected species were the culpeo fox and the cougar. Conversely, during the night, the kodkod and chilla fox were the most detected species. The best supported models showed that native carnivores responded differently to landscape attributes and dogs depending on both the time of day as well as the spatial scale of landscape attributes. The positive effect of native forest cover at 250m and 500 m radius buffers was stronger during the night for the Darwin's fox and cougar. Road density at 250m scale negatively affected the diurnal occurrence of Darwin´s fox, whereas at 500m scale roads had a stronger negative effect on the diurnal occurrence of Darwin´s foxes and cougars. A positive effect of road density on dog occurrence was evidenced during both night and day. Patch size had a positive effect on cougar occurrence during night whereas it affected negatively the occurrence of culpeo foxes and skunks during day. Dog occurrence had a negative effect on Darwin's fox occurrence during day-time and night-time, whereas its negative effect on the occurrence of cougar was evidenced only during day-time. Carnivore occurrences were not influenced by the proximity to a conservation area. Our results provided support for the hypothesis that diurnal changes to carnivore occurrence were associated with human and dog activity. Landscape planning in our study area should be focused in reducing both the levels of diurnal human activity in native forest remnants and the dispersion rates of dogs into these habitats.

Giants are coming? Predicting the potential spread and impacts of the giant Asian hornet (Vespa mandarinia, Hymenoptera:Vespidae) in the USA

BACKGOUND

Biological invasions are a global concern in agriculture, food production and biodiversity. Among the invasive species, some hornets are known to have serious effects on honey bees, as found during the invasion of Vespa velutina in Europe. The recent findings of Vespa mandarinia individuals in Washington state in the west coast of the USA have raised alarm in the whole country. Here we estimate the potential spread of V. mandarinia in the USA, analyzing its potential impacts on honey bee colonies, economic losses in the honey bee industry and bee-pollinated croplands.

RESULTS

We found that V. mandarinia could colonize Washington and Oregon states in the west coast and a significant proportion of the east coast. If this species spread across the country, it could threaten 95 216 ± 5551 honey bee colonies, threatening an estimated income of US$11.9 and 101.8 million for hive derived products and bee-pollinated crops production, respectively, while colonizing 60 837.8 km² of bee-pollinated croplands.

CONCLUSION

Our results suggest that V. mandarinia will have serious effects in the USA, raising the need for prompt monitoring actions and planning at different administrative levels to avoid its potential spread.

Foraging Behaviour in Magellanic Woodpeckers Is Consistent with a Multi-Scale Assessment of Tree Quality

Theoretical models predict that animals should make foraging decisions after assessing the quality of available habitat, but most models fail to consider the spatio-temporal scales at which animals perceive habitat availability. We tested three foraging strategies that explain how Magellanic woodpeckers (Campephilus magellanicus) assess the relative quality of trees: 1) Woodpeckers with local knowledge select trees based on the available trees in the immediate vicinity. 2) Woodpeckers lacking local knowledge select trees based on their availability at previously visited locations. 3) Woodpeckers using information from long-term memory select trees based on knowledge about trees available within the entire landscape. We observed foraging woodpeckers and used a Brownian Bridge Movement Model to identify trees available to woodpeckers along foraging routes. Woodpeckers selected trees with a later decay stage than available trees. Selection models indicated that preferences of Magellanic woodpeckers were based on clusters of trees near the most recently visited trees, thus suggesting that woodpeckers use visual cues from neighboring trees. In a second analysis, Cox’s proportional hazards models showed that woodpeckers used information consolidated across broader spatial scales to adjust tree residence times. Specifically, woodpeckers spent more time at trees with larger diameters and in a more advanced stage of decay than trees available along their routes. These results suggest that Magellanic woodpeckers make foraging decisions based on the relative quality of trees that they perceive and memorize information at different spatio-temporal scales.

Increasing importance of heat stress for cattle farming under future global climate scenarios

In the last decades, livestock species have been severely affected by heat stress because of increasing temperatures, which has threatened animal welfare and decreased production. Based on thermal comfort indices and ensemble climate projections, we analyzed the current and future global spatiotemporal patterns of the heat exposure of cattle in 10 agroclimatic zones. The results show that ~7% of the global cattle population is currently exposed to dangerous heat conditions. This percentage is projected to increase to ~48% before 2100 under a scenario of growing emissions. Tropical agroclimatic zones are expected to face an early increase in the exposure to intense heat before 2050. Heat exposure was negatively correlated with the socioeconomic variables, showing that poor and livestock-dependent tropical countries are the most affected. Our results demonstrate the near-future consequences of heat stress on livestock, emphasizing the limited time available to implement effective abatement strategies.

Heavy metals in northern Chilean rivers: spatial variation and temporal trends

Rivers of central-northern Chile are exposed to pollution from different sources, including mining activities, natural orogenic process, volcanic activity, and geology. In order to determine the contribution of mining to river pollution, the spatio-temporal dynamics of chemical species dissolved in 12 rivers of central-northern Chile was assessed. Of all the rivers studied, the Elqui showed the highest historical mean concentrations of As, Cu and Pb. The Aconcagua had the highest concentration of Hg and a large Cr concentration, while the Rapel showed elevated concentrations of Cu and Mo. The Elqui and the Aconcagua were clustered as distinct groups by a cluster analysis based on two independent principal components. Hierarchical Bayesian models showed annual trends but no seasonal effects in heavy metal concentrations. As and Cu in the Elqui had positive annual slopes. Sulphate concentration exceeded 100 mg L(-1) in nine rivers, and in seven of them it had positive annual slopes. Our findings suggest that mining pollution is the main process contributing to this increasing annual trend in As, Cu and SO(4)(2-). Therefore, in order to improve the water quality of these rivers it is necessary to identify the main sources of heavy metals associated with mining activities.

The failed invasion of Harmonia axyridis in the Azores, Portugal: Climatic restriction or wrong population origin?

We tested two questions: (i) whether the climatic conditions of the Azorean Islands in Portugal may have restricted the invasion of Harmonia axyridis across this archipelago and (ii) determine what population of this species could have a higher probability of invading the islands. We used MaxEnt to project the climate requirements of different H. axyridis populations from three regions of the world, and the potential global niche of the species in the Azorean islands. Then we assessed the suitability of the islands for each of the three H. axyridis populations and global potential niche through histograms analysis, Principal Component Analysis (PCA) of climate variables, and a variable-by-variable assessment of the suitability response curves compared with the climatic conditions of the Azores. Climatic conditions of the Azores are less suitable for the U.S. and native Asian populations of H. axyridis, and more suitable for European populations and the global potential niche. The PCA showed that the climatic conditions of the islands differed from the climatic requirements of H. axyridis. This difference is mainly explained by precipitation of the wettest month, isothermality, and the minimum temperature of the coldest month. We concluded that the climatic conditions of the Azores could have influenced the establishment and spread of H. axyridis on these islands from Europe. Our results showed that abiotic resistance represented by the climate of the potentially colonizable zones could hinder the establishment of invasive insects, but it could vary depending of the origin of the colonizing population.

Spatial Quantification of the Population Exposed to Cryptococcus neoformans and Cryptococcus gattii Species Complexes in Europe: Estimating the Immunocompetent and HIV/AIDS Patients Under Risk

Cryptococcus is an important fungal pathogen worldwide, causing serious clinical manifestations that can affect immunocompetent patients and can be particularly severe for immunocompromised patients. The Cryptococcus gattii s.s. (AFLP4/VGI), Cryptococcus tetragattii (AFLP/VGIV), Cryptococcus neoformans, and Cryptococcus deneoformans have been isolated from both clinical and environmental sources in Europe. We aim to quantify the people in Europe and the entire Mediterranean area who are under risk associated with each of the three fungal pathogens in a spatially explicit way, generating a series of maps and population statistics per country. Niche modeling was applied to estimate the potential distribution of each fungal pathogen, then these models were overlapped with a map of population density to estimate risk levels. The potential number of people per risk level and per country was quantified using a map of population count per pixel. Prevalence of HIV per country was also included in the analysis to quantify the HIV-infected population under potential risk. People under risk associated with exposure to C. gattii species (C. gattii s.s. and C. tetragattii) reached 137.65 million, whereas those exposed to C. neoformans and C. deneoformans were 268.58 and 360.78 million people, respectively. More than a half million HIV-infected patients are exposed to each of the two species of the C. neoformans species complex, and more than 200,000 to the C. gattii species complex. The present results can be useful for public health planning by European governments, focusing on the provision of inputs for a "screen-and-treat" approach, availability of medical resources, and continuous monitoring programs in risk zones.

Expansion of the Emerging Fungal Pathogen Cryptococcus bacillisporus Into America: Linking Phylogenetic Origin, Geographical Spread and Population Under Exposure Risk

In 2018 the fungal pathogen Cryptococcus bacillisporus (AFLP5/VGIII) was isolated for the first time in Chile, representing the only report in a temperate region in South America. We reconstructed the colonization process of C. bacillisporus in Chile, estimating the phylogenetic origin, the potential spread zone, and the population at risk. We performed a phylogenetic analysis of the strain and modeled the environmental niche of the pathogen projecting its potential spread zone into the new colonized region. Finally, we generated risk maps and quantified the people under potential risk. Phylogenetic analysis showed high similarity between the Chilean isolate and two clonal clusters from California, United States and Colombia in South America. The pathogen can expand into all the temperate Mediterranean zone in central Chile and western Argentina, exposing more than 12 million people to this pathogen in Chile. This study has epidemiological and public health implications for the response to a potential C. bacillisporus outbreak, optimizing budgets, routing for screening diagnosis, and treatment implementation.

Cooling and eutrophication of southern Chilean lakes

Understanding the impacts of global warming and human-disturbances on lakes is required for implementing management strategies aimed at mitigating the decline of the quality and availability of water for humans. We assessed temporal trends in water parameters, and the contribution of land use to the eutrophication of the largest lakes of central-southern Chile. The mean values of water parameters varied seasonally, with lakes Chapo and Caburgua exhibiting lower pH, temperature, and N/P ratio values. Over the assessed period (19 years), we found a temporal reduction in water conductivity and temperature of the lakes. The concentration of NO3(-)-N, PO4(3-)-P and dissolved oxygen increased in all the lakes, but pH increased in eight out of the ten lakes. The negative temporal trend in temperature was more pronounced as the depth level increased. Lakes whose basins had a higher percentage of forest plantation and urban areas had larger values of Chlorophyll a and pH, as well as, smaller values of dissolved oxygen. Lakes whose basins included larger percentages of native forest had smaller nutrient (NO3(-)-N, PO4(3-)-P) concentrations. Our findings suggest that decreased rainfall in central-southern Chile due to climate change may cause a decrease of particulate material that is carried by tributaries into the lakes. The observed temporal decrease in temperature, especially at the deeper levels, may be explained by the rapid melting of glaciers. Although the studied lakes are classified as oligotrophic, deforestation and expansion of urban areas around the lakes have led to increased nutrient input, thus accelerating their eutrophication.

Current and future spatial assessment of biological control as a mechanism to reduce economic losses and carbon emissions: the case of Solanum sisymbriifolium in Africa

BACKGROUND

Solanum sisymbriifolium is a native plant of South America introduced into Africa, which has detrimental effects on crop yields, and on the environment due to weed control treatment by burning. In South America, S. sisymbriifolium is naturally controlled by the beetle Gratiana spadicea, making this a potential option for its control in Africa. Here, we aim to generate current and future scenarios for the introduction of G. spadicea as a biocontrol agent in Africa, analysing: (i) current and future effective biocontrol areas; (ii) potentially avoided economic losses (AEL), and chemical control costs and savings; and (iii) avoided carbon emissions (ACE) associated with the non-burning of crop fields. We combine species distribution models (SDM) with land cover maps to estimate current and future effective biocontrol considering Representative Concentration Pathways (RCP) 4.5 and 8.5 climate change scenarios. We then estimate AEL and ACE using biocontrol, and chemical control costs and savings.

RESULTS

The effective biocontrol area reached 392 405 km² in 18 countries, representing 40% of potentially affected croplands. Climate change induced a decrease in affected croplands and effective biocontrol. The estimated AEL reached US$45 447.2 ± 5617.3 billion distributed across 16 countries, while the estimated chemical control costs and savings reached US$1988.5 billion and 1411.8 billion, respectively. Potential ACE reached 36.3 ± 5.4 Tg.

CONCLUSIONS

Our study provides evidence for the potential benefits of biological controllers on economic losses and carbon emissions, which can be incorporated into sustainable development in low-income countries.

Nutrients dynamics in the main river basins of the centre-southern region of Chile

Chilean basins have long been exposed to nutrient discharges from human activities and land use changes. A historical seasonal NO(3)(-)-N and PO(4)(3-)-P database of the last 23 years of the main nine rivers of central-southern region of Chile was analysed. Generalized additive models indicated that annual trends in NO(3)(-)-N and PO(4)(3-)-P are nonlinear. River basins such as Bío-Bío, Bueno, Imperial, Maule, Rapel and Valdivia showed a clear increase in NO(3)(-)-N, while PO(4)(3-)-P increased only in the Rapel and Maule basins. Although no seasonal difference in NO(3)(-)-N and PO(4)(3-)-P was found in the analysed basins, there was a negative relation between these nutrients and water flow. Sampling stations with high NO(3)(-)-N concentration were found mostly in sub-basins located in the "central valley" of central Chile, while several PO(4)(3-)-P "over-concentrated" sampling stations were located mostly upstream. If NO(3)(-)-N emissions into Chilean river basins continue at current rates it is probable that the concentration of this nutrient will tend to match that of the most "polluted" rivers around the world.