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Tromp J, Beusekamp JC, Ouwerkerk W, Meer P, Cleland JG, Angermann CE, Dahlstrom U, Ertl G, Hassanein M, Perrone SV, Ghadanfar M, Schweizer A, Obergfell A, Filippatos G, Dickstein K, Collins SP, Lam CS. Regional Differences in Precipitating Factors of Hospitalization for Acute Heart Failure: Insights from the
REPORT‐HF
Registry. Eur J Heart Fail 2022; 24:645-652. [PMID: 35064730 PMCID: PMC9106888 DOI: 10.1002/ejhf.2431] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/07/2021] [Revised: 01/05/2022] [Accepted: 01/14/2022] [Indexed: 11/11/2022] Open
Abstract
AIMS Few prior studies have investigated differences in precipitants leading to hospitalizations for acute heart failure (AHF) in a cohort with global representation. METHODS AND RESULTS We analysed the prevalence of precipitants and their association with outcomes in 18 553 patients hospitalized for AHF in REPORT-HF (prospective international REgistry to assess medical Practice with lOngitudinal obseRvation for Treatment of Heart Failure) according to left ventricular ejection fraction subtype (reduced [HFrEF] and preserved ejection fraction [HFpEF]) and presentation (new-onset vs. decompensated chronic heart failure [DCHF]). Patients were enrolled from 358 centres in 44 countries stratified according to Latin America, North America, Western Europe, Eastern Europe, Eastern Mediterranean and Africa, Southeast Asia, and Western Pacific. Precipitants were pre-with mutually exclusive categories and selected according to the local investigator's discretion. Outcomes included in-hospital and 1-year mortality. The median age was 67 (interquartile range 57-77) years, and 39% were women. Acute coronary syndrome (ACS) was the most common precipitant in patients with new-onset heart failure in all regions except for North America and Western Europe, where uncontrolled hypertension and arrhythmia, respectively, were the most common precipitants, independent of confounders. In patients with DCHF, non-adherence to diet/medication was the most common precipitant regardless of region. Uncontrolled hypertension was a more likely precipitant in HFpEF, non-adherence to diet/medication, and ACS were more likely precipitants in HFrEF. Patients admitted due to worsening renal function had the worst in-hospital (5%) and 1-year post-discharge (30%) mortality rates, regardless of region, heart failure subtype and admission type (pinteraction >0.05 for all). CONCLUSION Data on global differences in precipitants for AHF highlight potential regional differences in targets for preventing hospitalization for AHF and identifying those at highest risk for early mortality.
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Affiliation(s)
- Jasper Tromp
- Saw Swee Hock School of Public Health National University of Singapore and National University Health System Singapore
- Duke‐NUS Medical School Singapore
| | - Joost C. Beusekamp
- University of Groningen, University Medical Center Groningen Groningen The Netherlands
| | - Wouter Ouwerkerk
- National Heart Centre Singapore Singapore
- Dept of Dermatology Amsterdam UMC, University of Amsterdam, Amsterdam Infection & Immunity Institute Amsterdam The Netherlands
| | - Peter Meer
- University of Groningen, University Medical Center Groningen Groningen The Netherlands
| | - John G.F. Cleland
- Robertson Centre for Biostatistics and Clinical Trials, Institute of Health & Well‐Being, University of Glasgow and National Heart & Lung Institute, Imperial College London
| | - Christiane E. Angermann
- Comprehensive Heart Failure Centre, University Hospital and University of Würzburg Würzburg Germany
| | - Ulf Dahlstrom
- Department of Cardiology and Department of Health, Medicine and Caring Sciences Linkoping University Linkoping Sweden
| | - Georg Ertl
- Comprehensive Heart Failure Centre, University Hospital and University of Würzburg Würzburg Germany
| | - Mahmoud Hassanein
- Alexandria University, Faculty of Medicine, Cardiology Department Alexandria Egypt
| | - Sergio V. Perrone
- El Cruce Hospital by Florencio Varela, Lezica Cardiovascular Institute, Sanctuary of the Trinidad Miter Buenos Aires Argentina
| | | | | | | | - Gerasimos Filippatos
- University of Cyprus, School of Medicine & National and Kapodistrian University of Athens, School of Medicine, Department of Cardiology Attikon University Hospital Athens Greece
| | | | - Sean P Collins
- Vanderbilt University Medical Center, Department of Emergency Medicine Nashville TN USA
| | - Carolyn S.P. Lam
- Duke‐NUS Medical School Singapore
- University of Groningen, University Medical Center Groningen Groningen The Netherlands
- National Heart Centre Singapore Singapore
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2
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Yang X, Meer P, Meer J. A New Approach to Robust Estimation of Parametric Structures. IEEE Trans Pattern Anal Mach Intell 2021; 43:3754-3769. [PMID: 32406824 DOI: 10.1109/tpami.2020.2994190] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Most robust estimators require tuning the parameters of the algorithm for the particular application, a bottleneck for practical applications. The paper presents the multiple input structures with robust estimator (MISRE), where each structure, inlier or outlier, is processed independently. The same two constants are used to find the scale estimates over expansions for each structure. The inlier/outlier classification is straightforward since the data is processed and ordered with the relevant inlier structures listed first. If the inlier noises are similar, MISRE's performance is equivalent to RANSAC-type algorithms. MISRE still returns the correct inlier estimates when inlier noises are very different, while RANSAC-type algorithms do not perform as well. MISRE's failures are gradual when too many outliers are present, beginning with the least significant inlier structure. Examples from 2D images and 3D point clouds illustrate the estimation.
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3
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Damman K, Ter Maaten JM, Meer P. Urinary sodium evaluation: the missing target for diuretic treatment optimization in acute heart failure patients? Reply. Eur J Heart Fail 2020; 22:1933-1934. [PMID: 32298523 PMCID: PMC7687141 DOI: 10.1002/ejhf.1825] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/27/2020] [Accepted: 03/29/2020] [Indexed: 12/03/2022] Open
Affiliation(s)
- Kevin Damman
- Department of Cardiology University of Groningen, University Medical Center Groningen Groningen The Netherlands
| | - Jozine M. Ter Maaten
- Department of Cardiology University of Groningen, University Medical Center Groningen Groningen The Netherlands
| | - Peter Meer
- Department of Cardiology University of Groningen, University Medical Center Groningen Groningen The Netherlands
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4
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Bauersachs J, König T, Meer P, Petrie MC, Hilfiker‐Kleiner D, Mbakwem A, Hamdan R, Jackson AM, Forsyth P, Boer RA, Mueller C, Lyon AR, Lund LH, Piepoli MF, Heymans S, Chioncel O, Anker SD, Ponikowski P, Seferovic PM, Johnson MR, Mebazaa A, Sliwa K. Pathophysiology, diagnosis and management of peripartum cardiomyopathy: a position statement from the Heart Failure Association of the European Society of Cardiology Study Group on peripartum cardiomyopathy. Eur J Heart Fail 2019; 21:827-843. [DOI: 10.1002/ejhf.1493] [Citation(s) in RCA: 136] [Impact Index Per Article: 27.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/07/2019] [Revised: 03/21/2019] [Accepted: 04/23/2019] [Indexed: 12/28/2022] Open
Affiliation(s)
- Johann Bauersachs
- Department of Cardiology and AngiologyHannover Medical School Hannover Germany
| | - Tobias König
- Department of Cardiology and AngiologyHannover Medical School Hannover Germany
| | - Peter Meer
- Department of CardiologyUniversity Medical Center Groningen Groningen The Netherlands
| | - Mark C. Petrie
- Department of CardiologyInstitute of Cardiovascular and Medical Sciences, Glasgow University Glasgow UK
| | | | - Amam Mbakwem
- Department of MedicineCollege of Medicine, University of Lagos Nigeria
| | - Righab Hamdan
- Department of CardiologyBeirut Cardiac Institute Lebanon
| | - Alice M. Jackson
- Department of CardiologyInstitute of Cardiovascular and Medical Sciences, Glasgow University Glasgow UK
| | - Paul Forsyth
- Department of CardiologyInstitute of Cardiovascular and Medical Sciences, Glasgow University Glasgow UK
| | - Rudolf A. Boer
- Department of CardiologyUniversity Medical Center Groningen Groningen The Netherlands
| | - Christian Mueller
- Department of Cardiology and Cardiovascular Research Institute Basel (CRIB)University Hospital Basel, University of Basel Switzerland
| | | | - Lars H. Lund
- Department of MedicineKarolinska Institutet and Heart and Vascular Theme, Karolinska University Hospital Stockholm Sweden
| | | | - Stephane Heymans
- Department of Cardiology, CARIM School for Cardiovascular Diseases, Faculty of Health, Medicine and Life SciencesMaastricht University Maastricht The Netherlands
- Department of Cardiovascular SciencesCentre for Molecular and Vascular Biology Leuven Belgium
- The Netherlands Heart InstituteNl‐HI Utrecht The Netherlands
| | - Ovidiu Chioncel
- Institute of Emergency for Cardiovascular DiseaseUniversity of Medicine Carol Davila Bucharest Romania
| | - Stefan D. Anker
- Division of Cardiology and Metabolism, Department of Cardiology (CVK), Berlin‐Brandenburg Center for Regenerative Therapies (BCRT), German Centre for Cardiovascular Research (DZHK) Partner Site BerlinCharité Universitätsmedizin Berlin Berlin Germany
| | - Piotr Ponikowski
- Department of CardiologyMedical University, Clinical Military Hospital Wroclaw Poland
| | - Petar M. Seferovic
- University of Belgrade Faculty of Medicine and Heart Failure CenterBelgrade University Medical Center Belgrade Serbia
| | - Mark R. Johnson
- Department of Obstetrics, Imperial College School of MedicineChelsea and Westminster Hospital London UK
| | - Alexandre Mebazaa
- Department of Anesthesiology and Critical Care Medicine, AP‐HPSaint Louis Lariboisière University Hospitals, University Paris Diderot Paris France
| | - Karen Sliwa
- Hatter Institute for Cardiovascular Research in Africa, Department of Cardiology and MedicineUniversity of Cape Town Cape Town South Africa
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Eisenga MF, Wouters HJCM, Kieneker LM, Klauw MM, Meer P, Wolffenbuttel BHR, Gaillard CAJM, Kootstra‐Ros JE, Touw DJ, Huls G, Bakker SJL. Active smoking and macrocytosis in the general population: Two population-based cohort studies. Am J Hematol 2019; 94:E45-E48. [PMID: 30417934 PMCID: PMC6587986 DOI: 10.1002/ajh.25346] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2018] [Accepted: 11/06/2018] [Indexed: 11/18/2022]
Affiliation(s)
- Michele F. Eisenga
- Department of Nephrology, University Medical Center Groningen University of Groningen Groningen The Netherlands
| | - Hanneke J. C. M. Wouters
- Department of Endocrinology University Medical Center Groningen, University of Groningen Groningen The Netherlands
- Department of Hematology University Medical Center Groningen, University of Groningen Groningen The Netherlands
| | - Lyanne M. Kieneker
- Department of Nephrology, University Medical Center Groningen University of Groningen Groningen The Netherlands
| | - Melanie M. Klauw
- Department of Endocrinology University Medical Center Groningen, University of Groningen Groningen The Netherlands
| | - Peter Meer
- Department of Cardiology University Medical Center Groningen, University of Groningen Groningen The Netherlands
| | - Bruce H. R. Wolffenbuttel
- Department of Endocrinology University Medical Center Groningen, University of Groningen Groningen The Netherlands
| | - Carlo A. J. M. Gaillard
- Division of Internal Medicine and Dermatology University Medical Center Utrecht, University of Utrecht Utrecht The Netherlands
| | - Jenny E. Kootstra‐Ros
- Department of Laboratory Medicine University Medical Center Groningen, University of Groningen Groningen The Netherlands
| | - Daan J. Touw
- Department of Clinical Pharmacy and Pharmacology University Medical Center Groningen, University of Groningen Groningen The Netherlands
| | - Gerwin Huls
- Department of Hematology University Medical Center Groningen, University of Groningen Groningen The Netherlands
| | - Stephan J. L. Bakker
- Department of Nephrology, University Medical Center Groningen University of Groningen Groningen The Netherlands
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6
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Eisenga MF, Minović I, Berger SP, Kootstra‐Ros JE, Berg E, Riphagen IJ, Navis G, Meer P, Bakker SJL, Gaillard CAJM. Iron deficiency, anemia, and mortality in renal transplant recipients. Transpl Int 2016; 29:1176-1183. [DOI: 10.1111/tri.12821] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2016] [Revised: 05/04/2016] [Accepted: 07/25/2016] [Indexed: 12/26/2022]
Affiliation(s)
- Michele F. Eisenga
- Department of Internal Medicine Division of Nephrology University of Groningen, University Medical Center Groningen Groningen The Netherlands
| | - Isidor Minović
- Department of Internal Medicine Division of Nephrology University of Groningen, University Medical Center Groningen Groningen The Netherlands
- Department of Laboratory Medicine University of Groningen, University Medical Center Groningen Groningen The Netherlands
| | - Stefan P. Berger
- Department of Internal Medicine Division of Nephrology University of Groningen, University Medical Center Groningen Groningen The Netherlands
| | - Jenny E. Kootstra‐Ros
- Department of Laboratory Medicine University of Groningen, University Medical Center Groningen Groningen The Netherlands
| | - Else Berg
- Department of Internal Medicine Division of Nephrology University of Groningen, University Medical Center Groningen Groningen The Netherlands
| | - Ineke J. Riphagen
- Department of Internal Medicine Division of Nephrology University of Groningen, University Medical Center Groningen Groningen The Netherlands
- Department of Laboratory Medicine University of Groningen, University Medical Center Groningen Groningen The Netherlands
| | - Gerjan Navis
- Department of Internal Medicine Division of Nephrology University of Groningen, University Medical Center Groningen Groningen The Netherlands
| | - Peter Meer
- Department of Cardiology University of Groningen, University Medical Center Groningen Groningen The Netherlands
| | - Stephan J. L. Bakker
- Department of Internal Medicine Division of Nephrology University of Groningen, University Medical Center Groningen Groningen The Netherlands
| | - Carlo A. J. M. Gaillard
- Department of Internal Medicine Division of Nephrology University of Groningen, University Medical Center Groningen Groningen The Netherlands
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7
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Abstract
Mean shift clustering is a powerful nonparametric technique that does not require prior knowledge of the number of clusters and does not constrain the shape of the clusters. However, being completely unsupervised, its performance suffers when the original distance metric fails to capture the underlying cluster structure. Despite recent advances in semi-supervised clustering methods, there has been little effort towards incorporating supervision into mean shift. We propose a semi-supervised framework for kernel mean shift clustering (SKMS) that uses only pairwise constraints to guide the clustering procedure. The points are first mapped to a high-dimensional kernel space where the constraints are imposed by a linear transformation of the mapped points. This is achieved by modifying the initial kernel matrix by minimizing a log det divergence-based objective function. We show the advantages of SKMS by evaluating its performance on various synthetic and real datasets while comparing with state-of-the-art semi-supervised clustering algorithms.
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8
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Abstract
We propose a novel robust estimation algorithm—the generalized projection-based M-estimator (gpbM), which does not require the user to specify any scale parameters. The algorithm is general and can handle heteroscedastic data with multiple linear constraints for single and multicarrier problems. The gpbM has three distinct stages—scale estimation, robust model estimation, and inlier/outlier dichotomy. In contrast, in its predecessor pbM, each model hypotheses was associated with a different scale estimate. For data containing multiple inlier structures with generally different noise covariances, the estimator iteratively determines one structure at a time. The model estimation can be further optimized by using Grassmann manifold theory. We present several homoscedastic and heteroscedastic synthetic and real-world computer vision problems with single and multiple carriers.
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Affiliation(s)
- Sushil Mittal
- Department of Statistics, Columbia University, New York, NY 10027, USA.
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9
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Yang L, Georgescu B, Zheng Y, Wang Y, Meer P, Comaniciu D. Prediction based collaborative trackers (PCT): a robust and accurate approach toward 3D medical object tracking. IEEE Trans Med Imaging 2011; 30:1921-1932. [PMID: 21642040 DOI: 10.1109/tmi.2011.2158440] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
Robust and fast 3D tracking of deformable objects, such as heart, is a challenging task because of the relatively low image contrast and speed requirement. Many existing 2D algorithms might not be directly applied on the 3D tracking problem. The 3D tracking performance is limited due to dramatically increased data size, landmarks ambiguity, signal drop-out or complex nonrigid deformation. In this paper, we present a robust, fast, and accurate 3D tracking algorithm: prediction based collaborative trackers (PCT). A novel one-step forward prediction is introduced to generate the motion prior using motion manifold learning. Collaborative trackers are introduced to achieve both temporal consistency and failure recovery. Compared with tracking by detection and 3D optical flow, PCT provides the best results. The new tracking algorithm is completely automatic and computationally efficient. It requires less than 1.5 s to process a 3D volume which contains millions of voxels. In order to demonstrate the generality of PCT, the tracker is fully tested on three large clinical datasets for three 3D heart tracking problems with two different imaging modalities: endocardium tracking of the left ventricle (67 sequences, 1134 3D volumetric echocardiography data), dense tracking in the myocardial regions between the epicardium and endocardium of the left ventricle (503 sequences, roughly 9000 3D volumetric echocardiography data), and whole heart four chambers tracking (20 sequences, 200 cardiac 3D volumetric CT data). Our datasets are much larger than most studies reported in the literature and we achieve very accurate tracking results compared with human experts' annotations and recent literature.
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Affiliation(s)
- Lin Yang
- Integrated Data Systems, Department of Siemens CorporateResearch, Princeton, NJ 08540 USA.
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10
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Liu B, Yang L, Huang J, Meer P, Gong L, Kulikowski C. Robust and Fast Collaborative Tracking with Two Stage Sparse Optimization. Computer Vision – ECCV 2010 2010. [DOI: 10.1007/978-3-642-15561-1_45] [Citation(s) in RCA: 100] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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11
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Yang L, Chen W, Meer P, Salaru G, Goodell LA, Berstis V, Foran DJ. Virtual microscopy and grid-enabled decision support for large-scale analysis of imaged pathology specimens. ACTA ACUST UNITED AC 2009; 13:636-44. [PMID: 19369162 DOI: 10.1109/titb.2009.2020159] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Breast cancer accounts for about 30% of all cancers and 15% of cancer deaths in women. Advances in computer-assisted analysis hold promise for classifying subtypes of disease and improving prognostic accuracy. We introduce a grid-enabled decision support system for performing automatic analysis of imaged breast tissue microarrays. To date, we have processed more than 1,00,000 digitized specimens (1200 x 1200 pixels each) on IBM's World Community Grid (WCG). As a part of the Help Defeat Cancer (HDC) project, we have analyzed that the data returned from WCG along with retrospective patient clinical profiles for a subset of 3744 breast tissue samples, and have reported the results in this paper. Texture-based features were extracted from the digitized specimens, and isometric feature mapping was applied to achieve nonlinear dimension reduction. Iterative prototyping and testing were performed to classify several major subtypes of breast cancer. Overall, the most reliable approach was gentle AdaBoost using an eight-node classification and regression tree as the weak learner. Using the proposed algorithm, a binary classification accuracy of 89% and the multiclass accuracy of 80% were achieved. Throughout the course of the experiments, only 30% of the dataset was used for training.
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Affiliation(s)
- Lin Yang
- Department of Electrical and Computer Engineering, Rutgers University, Piscataway, NJ 08854, USA.
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12
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13
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Yang L, Tuzel O, Chen W, Meer P, Salaru G, Goodell LA, Foran DJ. PathMiner: a Web-based tool for computer-assisted diagnostics in pathology. ACTA ACUST UNITED AC 2009; 13:291-9. [PMID: 19171530 DOI: 10.1109/titb.2008.2008801] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Large-scale, multisite collaboration has become indispensable for a wide range of research and clinical activities that rely on the capacity of individuals to dynamically acquire, share, and assess images and correlated data. In this paper, we report the development of a Web-based system, PathMiner , for interactive telemedicine, intelligent archiving, and automated decision support in pathology. The PathMiner system supports network-based submission of queries and can automatically locate and retrieve digitized pathology specimens along with correlated molecular studies of cases from "ground-truth" databases that exhibit spectral and spatial profiles consistent with a given query image. The statistically most probable diagnosis is provided to the individual who is seeking decision support. To test the system under real-case scenarios, a pipeline infrastructure was developed and a network-based test laboratory was established at strategic sites at the University of Medicine and Dentistry of New Jersey-Robert Wood Johnson Medical School, Robert Wood Johnson University Hospital, the University of Pennsylvania School of Medicine, Hospital of the University of Pennsylvania, The Cancer Institute of New Jersey, and Rutgers University. The average five-class classification accuracy of the system was 93.18% based on a tenfold cross validation on a close dataset containing 3691 imaged specimens. We also conducted prospective performance studies with the PathMiner system in real applications in which the specimens exhibited large variations in staining characters compared with the training data. The average five-class classification accuracy in this open-set experiment was 87.22%. We also provide the comparative results with the previous literature and the PathMiner system shows superior performance.
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Affiliation(s)
- Lin Yang
- Department of Electrical and Computer Engineering, Rutgers University, Piscataway, NJ 08854, USA.
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14
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Abstract
We present a new algorithm to detect pedestrian in still images utilizing covariance matrices as object descriptors. Since the descriptors do not form a vector space, well known machine learning techniques are not well suited to learn the classifiers. The space of d-dimensional nonsingular covariance matrices can be represented as a connected Riemannian manifold. The main contribution of the paper is a novel approach for classifying points lying on a connected Riemannian manifold using the geometry of the space. The algorithm is tested on INRIA and DaimlerChrysler pedestrian datasets where superior detection rates are observed over the previous approaches.
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Affiliation(s)
- Oncel Tuzel
- Department of Computer Science, Rutgers University, Piscataway, NJ 08854, USA.
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Yang L, Chen W, Meer P, Salaru G, Feldman MD, Foran DJ. High throughput analysis of breast cancer specimens on the grid. Med Image Comput Comput Assist Interv 2008; 10:617-25. [PMID: 18051110 DOI: 10.1007/978-3-540-75757-3_75] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Abstract
Breast cancer accounts for about 30% of all cancers and 15% of all cancer deaths in women in the United States. Advances in computer assisted diagnosis (CAD) holds promise for early detecting and staging disease progression. In this paper we introduce a Grid-enabled CAD to perform automatic analysis of imaged histopathology breast tissue specimens. More than 100,000 digitized samples (1200 x 1200 pixels) have already been processed on the Grid. We have analyzed results for 3744 breast tissue samples, which were originated from four different institutions using diaminobenzidine (DAB) and hematoxylin staining. Both linear and nonlinear dimension reduction techniques are compared, and the best one (ISOMAP) was applied to reduce the dimensionality of the features. The experimental results show that the Gentle Boosting using an eight node CART decision tree as the weak learner provides the best result for classification. The algorithm has an accuracy of 86.02% using only 20% of the specimens as the training set.
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Affiliation(s)
- Lin Yang
- Dept. of Electrical and Computer Eng., Rutgers Univ., Piscataway, NJ 08544, USA
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16
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Abstract
Automatic image analysis of histopathology specimens would help the early detection of blood cancer. The first step for automatic image analysis is segmentation. However, touching cells bring the difficulty for traditional segmentation algorithms. In this paper, we propose a novel algorithm which can reliably handle touching cells segmentation. Robust estimation and color active contour models are used to delineate the outer boundary. Concave points on the boundary and inner edges are automatically detected. A concave vertex graph is constructed from these points and edges. By minimizing a cost function based on morphological characteristics, we recursively calculate the optimal path in the graph to separate the touching cells. The algorithm is computationally efficient and has been tested on two large clinical dataset which contain 207 images and 3898 images respectively. Our algorithm provides better results than other studies reported in the recent literature.
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Affiliation(s)
- Lin Yang
- Dept. of Electrical and Computer Eng., Rutgers Univ., Piscataway, NJ 08854, USA
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17
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Yang L, Meer P, Foran DJ. Multiple Class Segmentation Using A Unified Framework over Mean-Shift Patches. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit 2007; 2007:1-8. [PMID: 19295664 DOI: 10.1109/cvpr.2007.383229] [Citation(s) in RCA: 82] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Object-based segmentation is a challenging topic. Most of the previous algorithms focused on segmenting a single or a small set of objects. In this paper, the multiple class object-based segmentation is achieved using the appearance and bag of keypoints models integrated over mean-shift patches. We also propose a novel affine invariant descriptor to model the spatial relationship of keypoints and apply the Elliptical Fourier Descriptor to describe the global shapes. The algorithm is computationally efficient and has been tested for three real datasets using less training samples. Our algorithm provides better results than other studies reported in the literature.
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Affiliation(s)
- Lin Yang
- ECE Department Rutgers University Piscataway, NJ 08854
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18
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Abstract
We describe a decision support system to distinguish among hematology cases directly from microscopic specimens. The system uses an image database containing digitized specimens from normal and four different hematologic malignancies. Initially, the nuclei and cytoplasmic components of the specimens are segmented using a robust color gradient vector flow active contour model. Using a few cell images from each class, the basic texture elements (textons) for the nuclei and cytoplasm are learned, and the cells are represented through texton histograms. We propose to use support vector machines on the texton histogram based cell representation and achieve major improvement over the commonly used classification methods in texture research. Experiments with 3,691 cell images from 105 patients which originated from four different hospitals indicate more than 84% classification performance for individual cells and 89% for case based classification for the five class problem.
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Affiliation(s)
- Oncel Tuzel
- Department of Computer Science, Rutgers University, Piscataway, NJ 08854, USA
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20
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Abstract
In an errors-in-variables (EIV) model, all the measurements are corrupted by noise. The class of EIV models with constraints separable into the product of two nonlinear functions, one solely in the variables and one solely in the parameters, is general enough to represent most computer vision problems. We show that the estimation of such nonlinear EIV models can be reduced to iteratively estimating a linear model having point dependent, i.e., heteroscedastic, noise process. Particular cases of the proposed heteroscedastic errors-in-variables (HEIV) estimator are related to other techniques described in the vision literature: the Sampson method, renormalization, and the fundamental numerical scheme. In a wide variety of tasks, the HEIV estimator exhibits the same, or superior, performance as these techniques and has a weaker dependence on the quality of the initial solution than the Levenberg-Marquardt method, the standard approach toward estimating nonlinear models.
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Affiliation(s)
- Bogdan C Matei
- Vision Technologies Laboratory, Sarnoff Corporation, 201 Washington Road, Princeton, NJ 08540, USA.
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21
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Abstract
One of the most commonly used clinical tests performed today is the routine evaluation of peripheral blood smears. In this paper, we investigate the design, development, and implementation of a robust color gradient vector flow (GVF) active contour model for performing segmentation, using a database of 1791 imaged cells. The algorithms developed for this research operate in Luv color space, and introduce a color gradient and L2E robust estimation into the traditional GVF snake. The accuracy of the new model was compared with the segmentation results using a mean-shift approach, the traditional color GVF snake, and several other commonly used segmentation strategies. The unsupervised robust color snake with L2E robust estimation was shown to provide results which were superior to the other unsupervised approaches, and was comparable with supervised segmentation, as judged by a panel of human experts.
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Affiliation(s)
- Lin Yang
- Department of Electrical and Computer Engineering, Rutgers University, Piscataway, NJ 08854, USA.
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Chen W, Meer P, Georgescu B, He W, Goodell LA, Foran DJ. Image mining for investigative pathology using optimized feature extraction and data fusion. Comput Methods Programs Biomed 2005; 79:59-72. [PMID: 15908036 DOI: 10.1016/j.cmpb.2005.03.006] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2004] [Revised: 03/04/2005] [Accepted: 03/08/2005] [Indexed: 05/02/2023]
Abstract
In many subspecialties of pathology, the intrinsic complexity of rendering accurate diagnostic decisions is compounded by a lack of definitive criteria for detecting and characterizing diseases and their corresponding histological features. In some cases, there exists a striking disparity between the diagnoses rendered by recognized authorities and those provided by non-experts. We previously reported the development of an Image Guided Decision Support (IGDS) system, which was shown to reliably discriminate among malignant lymphomas and leukemia that are sometimes confused with one another during routine microscopic evaluation. As an extension of those efforts, we report here a web-based intelligent archiving subsystem that can automatically detect, image, and index new cells into distributed ground-truth databases. Systematic experiments showed that through the use of robust texture descriptors and density estimation based fusion the reliability and performance of the governing classifications of the system were improved significantly while simultaneously reducing the dimensionality of the feature space.
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Affiliation(s)
- Wenjin Chen
- Center for Biomedical Imaging & Informatics, Room R203, 675 Hoes Lane, Piscataway, NJ 08854, USA.
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Abstract
A technique is presented to combine n data points, each available with point-dependent uncertainty, when only a subset of these points come from N < n sources, where N is unknown. We detect the significant modes of the underlying multivariate probability distribution using a generalization of the nonparametric mean shift procedure. The number of detected modes automatically defines N, while the belonging of a point to the basin of attraction of a mode provides the fusion rule. The robust data fusion algorithm was successfully applied to two computer vision problems: estimating the multiple affine transformations, and range image segmentation.
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Abstract
To solve the general point correspondence problem in which the underlying transformation between image patches is represented by a homography, a solution based on extensive use of first order differential techniques is proposed. We integrate in a single robust M-estimation framework the traditional optical flow method and matching of local color distributions. These distributions are computed with spatially oriented kernels in the 5D joint spatial/color space. The estimation process is initiated at the third level of a Gaussian pyramid, uses only local information, and the illumination changes between the two images are also taken into account. Subpixel matching accuracy is achieved under large projective distortions significantly exceeding the performance of any of the two components alone. As an application, the correspondence algorithm is employed in oriented tracking of objects.
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Affiliation(s)
- Bogdan Georgescu
- Computer Science Department, Rutgers University, 94 Brett Road, Piscataway, NJ 08854-8058, USA.
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Matei B, Meer P. Bootstrapping Errors-in-Variables Models. ACTA ACUST UNITED AC 2002. [DOI: 10.1007/3-540-44480-7_15] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/19/2023]
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Georgescu B, Meer P. Balanced Recovery of 3D Structure and Camera Motion from Uncalibrated Image Sequences. Computer Vision — ECCV 2002 2002. [DOI: 10.1007/3-540-47967-8_20] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/12/2023]
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Foran DJ, Comaniciu D, Meer P, Goodell LA. Computer-assisted discrimination among malignant lymphomas and leukemia using immunophenotyping, intelligent image repositories, and telemicroscopy. IEEE Trans Inf Technol Biomed 2000; 4:265-73. [PMID: 11206811 DOI: 10.1109/4233.897058] [Citation(s) in RCA: 46] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
The process of discriminating among pathologies involving peripheral blood, bone marrow, and lymph node has traditionally begun with subjective morphological assessment of cellular materials viewed using light microscopy. The subtle visible differences exhibited by some malignant lymphomas and leukemia, however, give rise to a significant number of false negatives during microscopic evaluation by medical technologists. We have developed a distributed, clinical decision support prototype for distinguishing among hematologic malignancies. The system consists of two major components, a distributed telemicroscopy system and an intelligent image repository. The hybrid system enables individuals located at disparate clinical and research sites to engage in interactive consultation and to obtain computer-assisted decision support. Software, written in JAVA, allows primary users to control the specimen stage, objective lens, light levels, and focus of a robotic microscope remotely while a digital representation of the specimen is continuously broadcast to all session participants. Primary user status can be passed as a token. The system features shared graphical pointers, text messaging capability, and automated database management. Search engines for the database allow one to automatically identify and retrieve images, diagnoses, and correlated clinical data of cases from a "gold standard" database which exhibit spectral and spatial profiles which are most similar to a given query image. The system suggests the most likely diagnosis based on majority logic of the retrieved cases. The system was used to discriminate among three lymphoproliferative disorders and healthy cells. The system provided the correct classification in more than 83% of the cases studied. System performance was evaluated using rigorous statistical assessment and by comparison with human observers.
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Affiliation(s)
- D J Foran
- Center for Biomedical Imaging & Informatics, UMDNJ-Robert Wood Johnson Medical School, Piscataway, NJ 08854, USA
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Abstract
Robust high-breakdown-point location estimators are employed to analyze image stacks under the piecewise constant image structure model. To reduce the effect of bias along the Z-axis, the class parameters are extracted using three consecutive slices, The segmentation algorithm first determines the most reliable seed regions, which are then used in a region-growing procedure supported by local evidence. The robustness and stability of the proposed technique is shown with both synthetic and real data, the latter consisting of one MRI and one confocal microscopy set. The performance of the algorithm is consistent with the ground truth obtained with manual segmentation by physicians.
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Affiliation(s)
- M Garza-Jinich
- Instituto de Investigaciones en Matematicas Aplicadas y en Sistemas, Universidad Nacional Autonoma de Mexico, Mexico DF.
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Gelder T, Balk A, Zondervan P, Maat A, Mochtar B, Meer P, Weimar W. C-reactive protein in the monitoring of acute rejection after heart transplantation. Transpl Int 1998. [DOI: 10.1111/j.1432-2277.1998.tb00818.x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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Meer P, Tyler D. Edge-Preserving Smoothers for Image Processing: Comment. J Am Stat Assoc 1998. [DOI: 10.2307/2670103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Meer P. Policy to limit young people's access to the media. Pediatr Nurs 1996; 22:218. [PMID: 8717840] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
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Meer P, Ramakrishna S, Lenz R. Correspondence of coplanar features through P2-invariant representations. Applications of Invariance in Computer Vision 1994. [DOI: 10.1007/3-540-58240-1_25] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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Abstract
In spatial hyperacuity the subjects discriminate a stimulus feature relative to a reference, with an accuracy significantly better than the grain of the retinal mosaic. We show that the normalized thresholds have a dichotomous behavior; they are either insensitive to the spatial parameter in the experiment or increase very steeply with it. This behavior is explained by the involvement in the processing of pixel (receptor) accuracy information about the structure of the stimulus. A computational model employing optimal filtering reproduces the experimental data and suggests that processing of spatial hyperacuity tasks in the human visual system is optimal.
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Affiliation(s)
- P Meer
- Center for Automation Research, University of Maryland, College Park 20742
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Meer P, Baugher ES, Rosenfeld A. Frequency domain analysis and synthesis of image pyramid generating kernels. IEEE Trans Pattern Anal Mach Intell 1987; 9:512-522. [PMID: 21869409 DOI: 10.1109/tpami.1987.4767939] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Construction of image pyramids is described as a two-di-mensional decimation process. Frequently employed generating kernels are compared to the optimal kernel that assures minimal information loss after the resolution reduction, i.e., the one corresponding to an ideal low pass filter. Physically realizable, optimal generating kernels are presented. The amount of computation required for generation of the image pyramid can be reduced significantly by employing half-band filters as components of the optimal kernel. Image pyramids generated by the optimal kernel show a better command of details than the ones generated by a simple 4 × 4 averaging, or a computationally equivalent kernel.
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Affiliation(s)
- P Meer
- Center for Automation Research, University of Maryland, College Park, MD 20742
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Abstract
The importance of comparison processes in spatial hyperacuity tasks was investigated by means of a new relative nonalignment discrimination task. Vernier-type configuations nonaligned to either left or right, were presented in succession, and the subject had to decide which configuation exhibited a larger nonalignment. The relative nonalignment thresholds were found to be more strongly dependent on the spatial arrangement of the two lines than the thresholds corresponding to "ordinary" spatial hyperacuity performances. This context dependency is attributed to the active role played in the processing by comparison mechanisms.
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46
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Meer P, Dobjanschi A. [Neuroleptoanalgesia in tonsillectomy in children]. Otorinolaringologie 1969; 14:249-53. [PMID: 5356068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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47
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Meer P, Sîrban I, Moca S, Nemeş T, Racolţea I, Secula I, Todea B, Togan F. [Aspects of otoantritis in infants of the Crişana region]. Otorinolaringologie 1967; 12:339-42. [PMID: 5594060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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Meer P, Novac I. [Considerations on asphyxia by drowning]. Otorinolaringologie 1967; 12:129-32. [PMID: 6046712] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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49
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Meer P, Marton O, Cernei L. [Otogenic complications over the last 6 years in the service of otorhinolaryngology of the Hospital for Adults from Oradea]. Otorinolaringologie 1966; 11:113-7. [PMID: 5960641] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
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Meer P, Sîrban I, Martin O, Dobjanschi A, Novac I. [Contributions to the treatment of laryngeal papillomatosis in small children]. Otorinolaringologie 1965; 10:325-9. [PMID: 5886547] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
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