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Metpally RPR, Nasser S, Malenica I, Courtright A, Carlson E, Ghaffari L, Villa S, Tembe W, Van Keuren-Jensen K. Comparison of Analysis Tools for miRNA High Throughput Sequencing Using Nerve Crush as a Model. Front Genet 2013;4:20. [PMID: 23459507 PMCID: PMC3585423 DOI: 10.3389/fgene.2013.00020] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2012] [Accepted: 02/06/2013] [Indexed: 12/31/2022]  Open
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Ahmed S, Metpally RPR, Sangadala S, Reddy BVB. Virtual screening and selection of drug-like compounds to block noggin interaction with bone morphogenetic proteins. J Mol Graph Model 2010;28:670-82. [PMID: 20137990 DOI: 10.1016/j.jmgm.2010.01.006] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2009] [Revised: 01/13/2010] [Accepted: 01/13/2010] [Indexed: 01/09/2023]
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Metpally RPR, Reddy BVB. Comparative proteome analysis of psychrophilic versus mesophilic bacterial species: Insights into the molecular basis of cold adaptation of proteins. BMC Genomics 2009;10:11. [PMID: 19133128 PMCID: PMC2653534 DOI: 10.1186/1471-2164-10-11] [Citation(s) in RCA: 93] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2008] [Accepted: 01/08/2009] [Indexed: 11/10/2022]  Open
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Metpally RPR, Vigneshwar R, Sowdhamini R. Genome inventory and analysis of nuclear hormone receptors in Tetraodon nigroviridis. J Biosci 2007;32:43-50. [PMID: 17426379 DOI: 10.1007/s12038-007-0005-4] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Sangadala S, Boden SD, Metpally RPR, Reddy BVB. Modeling and analysis of molecularinteraction between Smurf1-WW2 domain and various isoforms of LIM mineralization protein. Proteins 2007;68:690-701. [PMID: 17510966 DOI: 10.1002/prot.21429] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Sangadala S, Rao Metpally RP, B. Reddy BV. Molecular Interaction Between Smurfl WW2 Domain and PPXY Motifs of Smadl, Smad5, and Smad6—Modeling and Analysis. J Biomol Struct Dyn 2007;25:11-23. [DOI: 10.1080/07391102.2007.10507151] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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Sangadala S, Metpally RPR, Reddy BVB. Molecular interaction between Smurf1 WW2 domain and PPXY motifs of Smad1, Smad5, and Smad6--modeling and analysis. J Biomol Struct Dyn 2007;25:11-23. [PMID: 17676934] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
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Metpally RPR, Sowdhamini R. Cross genome phylogenetic analysis of human and Drosophila G protein-coupled receptors: application to functional annotation of orphan receptors. BMC Genomics 2005;6:106. [PMID: 16091152 PMCID: PMC1192796 DOI: 10.1186/1471-2164-6-106] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2005] [Accepted: 08/10/2005] [Indexed: 11/10/2022]  Open
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Metpally RPR, Sowdhamini R. Genome wide survey of G protein-coupled receptors in Tetraodon nigroviridis. BMC Evol Biol 2005;5:41. [PMID: 16022726 PMCID: PMC1187884 DOI: 10.1186/1471-2148-5-41] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2005] [Accepted: 07/15/2005] [Indexed: 11/23/2022]  Open
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