Lessons on fruiting body morphogenesis from genomes and transcriptomes of Agaricomycetes

Fruiting bodies (sporocarps, sporophores or basidiomata) of mushroom-forming fungi (Agaricomycetes) are among the most complex structures produced by fungi. Unlike vegetative hyphae, fruiting bodies grow determinately and follow a genetically encoded developmental program that orchestrates their growth, tissue differentiation and sexual sporulation. In spite of more than a century of research, our understanding of the molecular details of fruiting body morphogenesis is still limited and a general synthesis on the genetics of this complex process is lacking. In this paper, we aim at a comprehensive identification of conserved genes related to fruiting body morphogenesis and distil novel functional hypotheses for functionally poorly characterised ones. As a result of this analysis, we report 921 conserved developmentally expressed gene families, only a few dozens of which have previously been reported to be involved in fruiting body development. Based on literature data, conserved expression patterns and functional annotations, we provide hypotheses on the potential role of these gene families in fruiting body development, yielding the most complete description of molecular processes in fruiting body morphogenesis to date. We discuss genes related to the initiation of fruiting, differentiation, growth, cell surface and cell wall, defence, transcriptional regulation as well as signal transduction. Based on these data we derive a general model of fruiting body development, which includes an early, proliferative phase that is mostly concerned with laying out the mushroom body plan (via cell division and differentiation), and a second phase of growth via cell expansion as well as meiotic events and sporulation. Altogether, our discussions cover 1 480 genes of Coprinopsis cinerea, and their orthologs in Agaricus bisporus, Cyclocybe aegerita, Armillaria ostoyae, Auriculariopsis ampla, Laccaria bicolor, Lentinula edodes, Lentinus tigrinus, Mycena kentingensis, Phanerochaete chrysosporium, Pleurotus ostreatus, and Schizophyllum commune, providing functional hypotheses for ~10 % of genes in the genomes of these species. Although experimental evidence for the role of these genes will need to be established in the future, our data provide a roadmap for guiding functional analyses of fruiting related genes in the Agaricomycetes. We anticipate that the gene compendium presented here, combined with developments in functional genomics approaches will contribute to uncovering the genetic bases of one of the most spectacular multicellular developmental processes in fungi. Citation: Nagy LG, Vonk PJ, Künzler M, Földi C, Virágh M, Ohm RA, Hennicke F, Bálint B, Csernetics Á, Hegedüs B, Hou Z, Liu XB, Nan S, M. Pareek M, Sahu N, Szathmári B, Varga T, Wu W, Yang X, Merényi Z (2023). Lessons on fruiting body morphogenesis from genomes and transcriptomes of Agaricomycetes. Studies in Mycology 104: 1-85. doi: 10.3114/sim.2022.104.01.

Catalytic Ozonation of Nitrobenzene by Manganese-Based Y Zeolites

Catalytic ozonation process (COP) is considered as a cost-efficient technology for the treatment of refractory chemical wastewaters. The catalyst performance plays an important role for the treatment efficiency. The present study investigated efficiencies and mechanisms of manganese (Mn)-based Y zeolites in COPs for removing nitrobenzene from water. The catalysts of Mn/NaY and Mn/USY were prepared by incipient wetness impregnation, while Mn-USY was obtained by hydrothermal synthesis. Mn-USY contained a greater ratio of Mn2+ than Mn/NaY, and Mn/USY. Mn oxides loaded on Y zeolites promoted the COP efficiencies. Mn/NaY increased total organic carbon removal in COP by 7.3% compared to NaY, while Mn/USY and Mn-USY increased 11.5 and 15.8%, respectively, relative to USY in COP. Multivalent Mn oxides (Mn2+, Mn3+, and Mn4+) were highly dispersed on the surface of NaY or USY, and function as catalytic active sites, increasing mineralization. Mn-USY showed the highest total organic carbon removal (44.3%) in COP among the three catalysts, because Mn-USY had a higher ratio of Mn2+ to the total Mn oxides on the surface than Mn/NaY and Mn/USY and the catalytic effects from intercorrelations between Mn oxides and mesoporous surface structures. The hydroxyl radicals and superoxide radicals governed oxidations in COP using Mn-USY. Nitrobenzene was oxidized to polyhydroxy phenol, polyhydroxy nitrophenol, and p-benzoquinone. The intermediates were then oxidized to small organic acids and ultimately carbon dioxide and water. This study demonstrates the potential of Y zeolites used in COP for the treatment of refractory chemical wastewaters.