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Wu XL, Xiong SJ, Zhu J, Wang J, Shen JC, Chu PK. Identification of surface structures on 3C-SiC nanocrystals with hydrogen and hydroxyl bonding by photoluminescence. NANO LETTERS 2009; 9:4053-4060. [PMID: 19894694 DOI: 10.1021/nl902226u] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
SiC nanocrystals (NCs) exhibit unique surface chemistry and possess special properties. This provides the opportunity to design suitable surface structures by terminating the surface dangling bonds with different atoms thereby boding well for practical applications. In this article, we report the photoluminescence properties of 3C-SiC NCs in water suspensions with different pH values. Besides a blue band stemming from the quantum confinement effect, the 3C-SiC NCs show an additional photoluminescence band at 510 nm when the excitation wavelengths are longer than 350 nm. Its intensity relative to the blue band increases with the excitation wavelength. The 510 nm band appears only in acidic suspensions but not in alkaline ones. Fourier transform infrared, X-ray photoelectron spectroscopy, and X-ray absorption near-edge structure analyses clearly reveal that the 3C-SiC NCs in the water suspension have Si-H and Si-OH bonds on their surface, implying that water molecules only react with a Si-terminated surface. First-principle calculations suggest that the additional 510 nm band arises from structures induced by H(+) and OH(-) dissociated from water and attached to Si dimers on the modified (001) Si-terminated portion of the NCs. The size requirement is consistent with the observation that the 510 nm band can only be observed when the excitation wavelengths are relatively large, that is, excitation of bigger NCs.
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Gan ZX, Xiong SJ, Wu XL, He CY, Shen JC, Chu PK. Mn²+-bonded reduced graphene oxide with strong radiative recombination in broad visible range caused by resonant energy transfer. NANO LETTERS 2011; 11:3951-3956. [PMID: 21848298 DOI: 10.1021/nl202240s] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
The photoluminescence (PL) characteristics of Mn(2+)-bonded reduced graphene oxide (rGO) are studied in details. The Mn(2+)-bonded rGO is synthesized using MnO(2)-decorated GO as the intermediate products and ideal tunable PL is obtained by enhancing the long-wavelength (450-550 nm) emission. The PL spectra excited by different wavelengths are analyzed to elucidate the mechanism, and the resonant energy transfer between Mn(2+) and sp(2) clusters of the rGO appears to be responsible for the enhanced long-wavelength emission. To examine the effect of Mn(2+) on the long-wavelength emission from the Mn(2+)-bonded rGO, the PL characteristics of Mn(2+)-bonded rGO with smaller Mn concentrations are studied and weaker emission is observed. Our theoretical calculation corroborates the experimental results.
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Wu XL, Xiong SJ, Liu Z, Chen J, Shen JC, Li TH, Wu PH, Chu PK. Green light stimulates terahertz emission from mesocrystal microspheres. NATURE NANOTECHNOLOGY 2011; 6:103-6. [PMID: 21240282 DOI: 10.1038/nnano.2010.264] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2010] [Accepted: 11/30/2010] [Indexed: 05/12/2023]
Abstract
The discovery of efficient sources of terahertz radiation has been exploited in imaging applications, and developing a nanoscale terahertz source could lead to additional applications. High-frequency mechanical vibrations of charged nanostructures can lead to radiative emission, and vibrations at frequencies of hundreds of kilohertz have been observed from a ZnO nanobelt under the influence of an alternating electric field. Here, we observe mechanical resonance and radiative emission at ∼ 0.36 THz from core-shell ZnO mesocrystal microspheres excited by a continuous green-wavelength laser. We find that ∼ 0.016% of the incident power is converted into terahertz radiation, which corresponds to a quantum efficiency of ∼ 33%, making the ZnO microspheres competitive with existing terahertz-emitting materials. The mechanical resonance and radiation stem from the coherent photo-induced vibration of the hexagonal ZnO nanoplates that make up the microsphere shells. The ZnO microspheres are formed by means of a nonclassical, self-organized crystallization process, and represent a straightforward route to terahertz radiation at the nanoscale.
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Xu SJ, Xiong SJ, Shi SL. Resonant coupling of bound excitons with LO phonons in ZnO: Excitonic polaron states and Fano interference. J Chem Phys 2005; 123:221105. [PMID: 16375462 DOI: 10.1063/1.2140701] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We report on a photoluminescence observation of robust excitonic polarons due to resonant coupling of exciton and longitudinal optical (LO) phonon as well as Fano-type interference in high quality ZnO crystal. At low enough temperatures, resonant coupling of excitons and LO phonons leads to not only traditional Stokes lines (SLs) but also up to second-order anti-Stokes lines (ASLs) besides the zero-phonon line (ZPL). The SLs and ASLs are found to be not mirror symmetric with respect to the ZPL, strongly suggesting that they are from different coupling states of exciton and phonons. Besides these spectral features showing the quasiparticle properties of exciton-phonon coupling system, the first-order SL is found to exhibit characteristic Fano lineshape, caused by quantum interference between the LO components of excitonic polarons and the continuous phonon bath. These findings lead to a new insight into fundamental effects of exciton-phonon interactions.
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Yang Z, Xiong SJ. Structures and electronic properties of small FeBn (n=1–10) clusters. J Chem Phys 2008; 128:184310. [DOI: 10.1063/1.2913172] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Katsanos DE, Evangelou SN, Xiong SJ. Quantum electron dynamics in periodic and aperiodic sequences. PHYSICAL REVIEW. B, CONDENSED MATTER 1995; 51:895-904. [PMID: 9978240 DOI: 10.1103/physrevb.51.895] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/12/2023]
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Yang Z, Xiong SJ. Structural, electronic, and magnetic properties of YnO (n=2–14) clusters: Density functional study. J Chem Phys 2008; 129:124308. [DOI: 10.1063/1.2980055] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Chen HT, Xiong SJ, Wu XL, Zhu J, Shen JC, Chu PK. Tin oxide nanoribbons with vacancy structures in luminescence-sensitive oxygen sensing. NANO LETTERS 2009; 9:1926-1931. [PMID: 19435379 DOI: 10.1021/nl900075f] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Vacancy structures in tin oxide nanoribbons fabricated via thermal evaporation and post-processing are probed by luminescence spectroscopy, and interesting properties that bode well for oxygen sensing are observed. Besides a broad 620-nm band, the fabricated tin oxide nanoribbons show a photoluminescence band at 480 nm when the measurement temperature is <100 K. The blue band appears from nanoribbons synthesized under high oxygen pressure or annealed under oxygen. The dependence suggests that the oxygen interstitial and vacancy densities determine the electronic states that produce the blue band. Calculation of the electron structures based on the density functional theory shows that decreased oxygen vacancies or increased oxygen interstitials enhance the 480-nm band but suppress the 620-nm band. The results reported here indicate that the tin oxide nanoribbons with vacancy structures have potential applications in luminescence-sensitive oxygen sensing.
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Xiong SJ, Evangelou SN. Electronic transport in winding chains. PHYSICAL REVIEW. B, CONDENSED MATTER 1995; 52:13079-13082. [PMID: 9980483 DOI: 10.1103/physrevb.52.r13079] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/12/2023]
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Zhu CP, Xiong SJ, Tian YJ, Li N, Jiang KS. Scaling of directed dynamical small-world networks with random responses. PHYSICAL REVIEW LETTERS 2004; 92:218702. [PMID: 15245324 DOI: 10.1103/physrevlett.92.218702] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2003] [Revised: 12/02/2003] [Indexed: 05/24/2023]
Abstract
A dynamical model of small-world networks, with directed links which describe various correlations in social and natural phenomena, is presented. Random responses of sites to the input message are introduced to simulate real systems. The interplay of these ingredients results in the collective dynamical evolution of a spinlike variable S(t) of the whole network. The global average spreading length <L>(s) and average spreading time <T>(s) are found to scale as p(-alpha)ln(N with different exponents. Meanwhile, S(t) behaves in a duple scaling form for N>>N(*): S approximately f(p(-beta)q(gamma)t), where p and q are rewiring and external parameters, alpha, beta, and gamma are scaling exponents, and f(t) is a universal function. Possible applications of the model are discussed.
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Evangelou SN, Xiong SJ, Economou EN. Anderson localization for two interacting electrons in a disordered chain. PHYSICAL REVIEW. B, CONDENSED MATTER 1996; 54:8469-8473. [PMID: 9984519 DOI: 10.1103/physrevb.54.8469] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/12/2023]
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Wang J, Xiong SJ, Wu XL, Li TH, Chu PK. Glycerol-bonded 3C-SiC nanocrystal solid films exhibiting broad and stable violet to blue-green emission. NANO LETTERS 2010; 10:1466-1471. [PMID: 20210349 DOI: 10.1021/nl100407d] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
We have produced glycerol-bonded 3C-SiC nanocrystal (NC) films, which when excited by photons of different wavelengths, produce strong and tunable violet to blue-green (360-540 nm) emission as a result of the quantum confinement effects rendered by the 3C-SiC NCs. The emission is so intense that the emission spots are visible to the naked eyes. The light emission is very stable and even after storing in air for more than six months, no intensity degradation can be observed. X-ray photoelectron spectroscopy and absorption fine structure measurements indicate that the Si-terminated NC surfaces are completely bonded to glycerol molecules. Calculations of geometry optimization and electron structures based on the density functional theory for 3C-SiC NCs with attached glycerol molecules show that these molecules are bonded on the NCs causing strong surface structural change, while the isolated levels in the conduction band of the bare 3C-SiC NCs are replaced with quasi-continuous bands that provide continuous tunability of the emitted light by changing the frequencies of exciting laser. As an application, we demonstrate the potential of using 3C-SiC NCs to fabricate full-color emitting solid films by incorporating porous silicon.
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Li J, Yin L, Xiong SJ, Wu XL, Yu F, Ouyang ZW, Xia ZC, Zhang YQ, van Tol J, Song Y, Wang Z. Controlling Electron Spin Decoherence in Nd-based Complexes via Symmetry Selection. iScience 2020; 23:100926. [PMID: 32146324 PMCID: PMC7063258 DOI: 10.1016/j.isci.2020.100926] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2019] [Revised: 11/02/2019] [Accepted: 02/14/2020] [Indexed: 12/04/2022] Open
Abstract
Long decoherence time is a key consideration for molecular magnets in the application of the quantum computation. Although previous studies have shown that the local symmetry of spin carriers plays a crucial part in the spin-lattice relaxation process, its role in the spin decoherence is still unclear. Herein, two nine-coordinated capped square antiprism neodymium moieties [Nd(CO3)4H2O]5– with slightly different local symmetries, C1 versus C4 (1 and 2), are reported, which feature in the easy-plane magnetic anisotropy as shown by the high-frequency electron paramagnetic resonance (HF-EPR) studies. Detailed analysis of the relaxation time suggests that the phonon bottleneck effect is essential to the magnetic relaxation in the crystalline samples of 1 and 2. The 240 GHz Pulsed EPR studies show that the higher symmetry results in longer decoherence times, which is supported by the first principle calculations.
Neodymium-based complexes show the spin decoherence without the magnetic dilution The higher structural symmetry results in longer spin decoherence times The phonon bottleneck effect induces the slow magnetization relaxation behaviors
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Guo AM, Xiong SJ, Yang Z, Zhu HJ. Enhancement of transport in DNA-like systems induced by backbone disorder. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2008; 78:061922. [PMID: 19256883 DOI: 10.1103/physreve.78.061922] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2008] [Indexed: 05/27/2023]
Abstract
We report a theoretical study highlighting the fundamental effects of backbone disorder which simulates the environmental complications on charge transport properties of biological and synthetic DNA molecules. Based on effective tight-binding models of duplex DNA, the Lyapunov coefficient and current-voltage characteristics are numerically calculated by varying the backbone disorder degree. In contrast to the localization picture that the conduction of duplex DNA becomes poorer when the backbone disorder degree is increased, we find that the backbone disorder can enhance the charge transport ability of the DNA molecules when the environment-induced disorder surpasses a critical value, giving rise to a semiconducting-metallic transition. The physical origin for this is traced back to the antiresonant effects. These results provide a scenario to interpret a variety of transport behaviors observed in DNA molecules and suggest perspectives for future experiments intending to control the charge transport through DNA-based nanodevices.
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Xiong SJ, Chen L, Zhao Y. Dephasing and dissipation in a source-drain model of light-harvesting systems. Chemphyschem 2014; 15:2859-70. [PMID: 25044624 DOI: 10.1002/cphc.201402013] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2014] [Revised: 04/18/2014] [Indexed: 11/10/2022]
Abstract
The energy transport process in natural-light-harvesting systems is investigated by solving the time-dependent Schrödinger equation for a source-network-drain model incorporating the effects of dephasing and dissipation, owing to coupling with the environment. In this model, the network consists of electronically coupled chromophores, which can host energy excitations (excitons) and are connected to source channels, from which the excitons are generated, thereby simulating exciton creation from sunlight. After passing through the network, excitons are captured by the reaction centers and converted into chemical energy. In addition, excitons can reradiate in green plants as photoluminescent light or be destroyed by nonphotochemical quenching (NPQ). These annihilation processes are described in the model by outgoing channels, which allow the excitons to spread to infinity. Besides the photoluminescent reflection, the NPQ processes are the main outgoing channels accompanied by energy dissipation and dephasing. From the simulation of wave-packet dynamics in a one-dimensional chain, it is found that, without dephasing, the motion remains superdiffusive or ballistic, despite the strong energy dissipation. At an increased dephasing rate, the wave-packet motion is found to switch from superdiffusive to diffusive in nature. When a steady energy flow is injected into a site of a linear chain, exciton dissipation along the chain, owing to photoluminescence and NPQ processes, is examined by using a model with coherent and incoherent outgoing channels. It is found that channel coherence leads to suppression of dissipation and multiexciton super-radiance. With this method, the effects of NPQ and dephasing on energy transfer in the Fenna-Matthews-Olson complex are investigated. The NPQ process and the photochemical reflection are found to significantly reduce the energy-transfer efficiency in the complex, whereas the dephasing process slightly enhances the efficiency. The calculated absorption spectrum reproduces the main features of the measured counterpart. As a comparison, the exciton dynamics are also studied in a linear chain of pigments and in a multiple-ring system of light-harvesting complexes II (LH2) from purple bacteria by using the Davydov D1 ansatz. It is found that the exciton transport shows superdiffusion characteristics in both the chain and the LH2 rings.
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Wu XL, Xiong SJ, Siu GG, Huang GS, Mei YF, Zhang ZY, Deng SS, Tan C. Optical emission from excess Si defect centers in Si nanostructures. PHYSICAL REVIEW LETTERS 2003; 91:157402. [PMID: 14611493 DOI: 10.1103/physrevlett.91.157402] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2002] [Indexed: 05/24/2023]
Abstract
Four groups of Si nanostructures with and without beta-SiC nanocrystals were fabricated for clarifying the origin of a blue emission with a double-peak structure at 417 and 436 nm. Spectral analyses and microstructural observations show that the blue emission is related to the existence of excess Si atoms in these Si nanostructures. The energy levels of electrons in Si nanocrystals with vacancy defects formed from the excess Si atoms are calculated and the characteristics of the obtained density of states coincide with the observed double-peak emission. The present work provides a possible mechanism of the blue emission in various Si nanostructures.
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Xiong SJ, Xiong Y, Zhao Y. Enhancement of coherent energy transport by disorder and temperature in light harvesting processes. J Chem Phys 2013; 137:094107. [PMID: 22957555 DOI: 10.1063/1.4748571] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We investigate the influence of static disorder and thermal excitations on excitonic energy transport in the light-harvesting apparatus of photosynthetic systems by solving the Schrödinger equation and taking into account the coherent hoppings of excitons, the rates of exciton creation and annihilation in antennas and reaction centers, and the coupling to thermally excited phonons. The antennas and reaction centers are modeled, respectively, as the sources and drains which provide the channels for creation and annihilation of excitons. Phonon modes below a maximum frequency are coupled to the excitons that are continuously created in the antennas and depleted in the reaction centers, and the phonon population in these modes obeys the Bose-Einstein distribution at a given temperature. It is found that the energy transport is not only robust against the static disorder and the thermal noise, but it can also be enhanced by increasing the randomness and temperature in most parameter regimes. Relevance of our work to the highly efficient energy transport in photosynthetic systems is discussed.
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Guo AM, Yang Z, Zhu HJ, Xiong SJ. Influence of backbone on the charge transport properties of G4-DNA molecules: a model-based calculation. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2010; 22:065102. [PMID: 21389362 DOI: 10.1088/0953-8984/22/6/065102] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
We put forward a model Hamiltonian to describe the influence of backbone energetics on charge transport through guanine-quadruplex DNA (G4-DNA) molecules. Our analytical results show that an energy gap can be produced in the energy spectrum of G4-DNA by hybridization effects between the backbone and the base and by on-site energy difference of the backbone from the base. The environmental effects are investigated by introducing different types of disorder into the backbone sites. Our numerical results suggest that the localization length of G4-DNA can be significantly enhanced by increasing the backbone disorder degree when the environment-induced disorder is sufficiently large. There exists a backbone disorder-induced semiconducting-metallic transition in short G4-DNA molecules, where G4-DNA behaves as a semiconductor if the backbone disorder is weak and behaves as a conductor if the backbone disorder degree surpasses a critical value.
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Wang PL, Xiong SJ. Intrasubband plasmons and optical transmission in random-layer-thickness n-i-p-i semiconductor superlattices. PHYSICAL REVIEW. B, CONDENSED MATTER 1994; 49:10373-10380. [PMID: 10009860 DOI: 10.1103/physrevb.49.10373] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/12/2023]
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Feng JF, Xiong SJ. Large-bandgap behavior in transport of electrons through individual DNA molecules caused by coupling with a two-level system. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2002; 66:021908. [PMID: 12241215 DOI: 10.1103/physreve.66.021908] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2002] [Indexed: 05/23/2023]
Abstract
We propose a model to interpret the large-bandgap behavior in transport of electrons through an individual DNA molecule where the tunneling electrons are coupled with two-level systems (TLS). The TLS can be regarded as the simplest way to describe vibrations and inelastic scattering in the molecules if the two levels represent the low-lying phonon states. The nonlinear current-voltage curves can be derived by the use of the transfer matrices in an equivalent single-particle multichannel network. At low temperatures, the gap of the conduction band is sensitive to the strength of the coupling between the TLS and the conduction electrons. It is shown that the large-bandgap behavior similar to that of semiconductors stems from the inelastic scattering by the TLS.
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Wu XL, Xiong SJ, Sun LT, Shen JC, Chu PK. Low-frequency Raman scattering from nanocrystals caused by coherent excitation of phonons. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2009; 5:2823-2826. [PMID: 19882689 DOI: 10.1002/smll.200901579] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
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Xiong SJ, Chen Y, Evangelou SN. Diffusion of Electrons in Quasi-1D Polymer Structures with Random Interchain Couplings. PHYSICAL REVIEW LETTERS 1996; 77:4414-4417. [PMID: 10062532 DOI: 10.1103/physrevlett.77.4414] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
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Li J, Xiong SJ, Li C, Jin B, Zhang YQ, Jiang SD, Ouyang ZW, Wang Z, Wu XL, van Tol J, Song Y. Manipulation of Molecular Qubits by Isotope Effect on Spin Dynamics. CCS CHEMISTRY 2021. [DOI: 10.31635/ccschem.020.202000384] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
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Zhang GP, Xiong SJ. Influence of phonon scattering on coherent transmission of electrons through an Aharonov–Bohm ring. Chem Phys 2005. [DOI: 10.1016/j.chemphys.2005.04.026] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Guo AM, Xiong SJ. Violation of the single-parameter scaling hypothesis in human chromosome 22 with charge transfer models. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2009; 79:041924. [PMID: 19518273 DOI: 10.1103/physreve.79.041924] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2008] [Revised: 12/15/2008] [Indexed: 05/27/2023]
Abstract
We investigate transport properties of DNA sequences in human chromosome 22 and compare the results with those of a random artificial DNA sequence based on the single- and double-stranded charge transfer models. The statistical quantities, including the Hurst exponent, the distribution of Lyapunov exponent (LE), the central moments, and the scaling parameter, are numerically calculated by using the transfer-matrix approach. It is found that the existence of satellite DNA segments in human chromosome 22 could result in deviations from usual Gaussian distribution of LE. Our results suggest that the presence of the satellite DNA segments, together with the long-range correlations and the base-pairing correlations could lead to the violation of single-parameter scaling hypothesis which holds for the random artificial DNA sequence although the behaviors of the averaged LEs for both DNA sequences are similar. This provides a viewpoint to analyze differences between the genomic DNA sequences and the nonliving random ones on the basis of localization properties of wave functions in the sequences.
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