Postsealing genetic variation and population structure of two species of fur seal (Arctocephalus gazella and A. tropicalis)

Commercial sealing in the 18th and 19th centuries had a major impact on the Antarctic and subantarctic fur seal populations (Arctocephalus gazella and A. tropicalis) in the Southern Ocean. The intensive and unrestricted nature of the industry ensured substantial reductions in population sizes and resulted in both species becoming locally extinct at some sites. However, both species are continuing to recover, through the recolonization of islands across their former range and increasing population size. This study investigated the extent and pattern of genetic variation in each species to examine the hypothesis that higher levels of historic sealing in A. gazella have resulted in a greater loss of genetic variability and population structure compared with A. tropicalis. A 316-bp section of the mitochondrial control region was sequenced and revealed nucleotide diversities of 3.2% and 4.8% for A. gazella and A. tropicalis, respectively. There was no geographical distribution of lineages observed within either species, although the respective PhiST values of 0.074 and 0.19 were significantly greater than zero. These data indicate low levels of population structure in A. gazella and relatively high levels in A. tropicalis. Additional samples screened with restriction endonucleases were incorporated, and the distribution of restriction fragment length polymorphism (RFLP) and sequence haplotypes were examined to identify the main source populations of newly recolonized islands. For A. tropicalis, the data suggest that Macquarie Island and Iles Crozet were probably recolonized by females from Marion Island, and to a lesser extent Ile Amsterdam. Although there was less population structure within A. gazella, there were two geographical regions identified: a western region containing the populations of South Georgia and Bouvetoya, which were the probable sources for populations at Marion, the South Shetland and Heard Islands; and an eastern region containing the panmictic populations of Iles Kerguelen and Macquarie Island. The latter region may be a result of a pronounced founder effect, or represent a remnant population that survived sealing at Iles Kerguelen.

Tracking of marine predators to protect Southern Ocean ecosystems

Southern Ocean ecosystems are under pressure from resource exploitation and climate change^1,2. Mitigation requires the identification and protection of Areas of Ecological Significance (AESs), which have so far not been determined at the ocean-basin scale. Here, using assemblage-level tracking of marine predators, we identify AESs for this globally important region and assess current threats and protection levels. Integration of more than 4,000 tracks from 17 bird and mammal species reveals AESs around sub-Antarctic islands in the Atlantic and Indian Oceans and over the Antarctic continental shelf. Fishing pressure is disproportionately concentrated inside AESs, and climate change over the next century is predicted to impose pressure on these areas, particularly around the Antarctic continent. At present, 7.1% of the ocean south of 40°S is under formal protection, including 29% of the total AESs. The establishment and regular revision of networks of protection that encompass AESs are needed to provide long-term mitigation of growing pressures on Southern Ocean ecosystems.

Entanglement of Australian sea lions and New Zealand fur seals in lost fishing gear and other marine debris before and after Government and industry attempts to reduce the problem

In recent years, Australian governments and fishing industry associations have developed guiding principles aimed at reducing the impact of fishing on non-target species and the benthos and increasing community awareness of their efforts. To determine whether they reduced seal entanglement in lost fishing gear and other marine debris, we analysed Australian sea lion and New Zealand fur seal entanglement data collected from Kangaroo Island, South Australia. Contrary to our expectations, we found that entanglement rates did not decrease in recent years. The Australian sea lion entanglement rate (1.3% in 2002) and the New Zealand fur seal entanglement rate (0.9% in 2002) are the third and fourth highest reported for any seal species. Australian sea lions were most frequently entangled in monofilament gillnet that most likely originated from the shark fishery, which operates in the region where sea lions forage--south and east of Kangaroo Island. In contrast, New Zealand fur seals were most commonly entangled in loops of packing tape and trawl net fragments suspected to be from regional rock lobster and trawl fisheries. Based on recent entanglement studies, we estimate that 1478 seals die from entanglement each year in Australia. We discuss remedies such as education programs and government incentives that may reduce entanglements.

Phylogenetic relationships within the eared seals (Otariidae: Carnivora): implications for the historical biogeography of the family

Phylogenetic relationships within the family Otariidae were investigated using two regions of the mitochondrial genome. A 360-bp region of the cytochrome b gene was employed for the primary phylogenetic analysis, while a 356-bp segment of the control region was used to enhance resolution of the terminal nodes. Traditional classification of the family into the subfamilies Arctocephalinae (fur seals) and Otariinae (sea lions) is not supported, with the fur seal Callorhinus ursinus having a basal relationship relative to the rest of the family. This is consistent with the fossil record which suggests that this genus diverged from the line leading to the remaining fur seals and sea lions about 6 million years ago (mya). There is also little evidence to support or refute the monophyly of sea lions. Four sea lion clades and five fur seal clades were observed, but relationships among these clades are unclear. Similar genetic divergences between the sea lion clades (D(a) = 0.054-0.078), as well as between the major Arctocephalus fur seal clades (D(a) = 0.040-0.069) suggest that these groups underwent periods of rapid radiation at about the time they diverged from each other. Rapid radiations of this type make the resolution of relationships between the resulting species difficult and indicate the requirement for additional molecular data from both nuclear and mitochondrial genes. The phylogenetic relationships within the family and the genetic distances among some taxa highlight inconsistencies in the current taxonomic classification of the family.

Ménage à trois on Macquarie Island: hybridization among three species of fur seal (Arctocephalus spp.) following historical population extinction

Human-induced changes to natural systems can cause major disturbances to fundamental ecological and population processes and result in local extinctions and secondary contacts between formerly isolated species. Extensive fur seal harvesting during the nineteenth century on Macquarie Island (subantarctic) resulted in extinction of the original population. Recolonization by three species has been slow and complex, characterized by the establishment of breeding groups of Antarctic and subantarctic fur seals (Arctocephalus gazella and Arctocephalus tropicalis) and presumed nonbreeding (itinerant) male New Zealand fur seals (Arctocephalus forsteri). One thousand and seven pups from eight annual cohorts (1992-2003) were analysed using mitochondrial control region data (RFLP) and 10 microsatellite loci to estimate species composition and hybridization. Antarctic fur seals predominated, but hybridization occurred between all three species (17-30% of all pups). Involvement of New Zealand fur seals was unexpected as females are absent and males are not observed to hold territories during the breeding season. The proportion of hybrids in the population has fallen over time, apparently owing to substantial influxes of pure Antarctic and subantarctic individuals and non-random mating. Over 50% of New Zealand hybrids and 43% of Antarctic-subantarctic hybrids were not F(1), which indicates some degree of hybrid reproductive success, and this may be underestimated: simulations showed that hybrids become virtually undetectable by the third generation of backcrossing. While human impacts seem to have driven novel hybridization in this population, the present 'time slices' analysis suggests some biological resistance to complete homogenization.

Distribution and abundance of New Zealand fur seals, Arctocephalus forsteri, in South Australia and Western Australia

A survey to determine the distribution and abundance of New Zealand fur seals, Arctocephalus forsteri, in South Australia and Western Australia was conducted in January-March 1990. Minor surveys were conducted in the summers of 1987-88, 1988-89 and 1990-91. Although the surveys were primarily of black pups in breeding colonies, opportunity was taken to count fur seals of all age-classes, including those in non-breeding colonies. Pups were counted and, in more accessible and larger colonies, numbers of pups were estimated by a mark-recapture technique. The latter technique gave higher estimates than counting, and was considered more accurate. In South Australia, the seals extend from The Pages in Backstairs Passage to Nuyts Reef in the Great Australian Bight. In Western Australia, the range comprised islands on the south coast from the Recherche Archipelago to islands near Cape Leeuwin. There are 29 breeding localities; 13 are in South Australia and 16 in Western Australia. Eighteen of these have not been reported previously. The term ''breeding locality'' is used for aggregations of breeding colonies as well as for isolated breeding colonies. Estimates of the number of pups for the 1989-90 breeding season were 5636 in South Australia and 1429 in Western Australia. This leads to a population estimate of approximately 34600 seals in these two states (using a multiplier of 4.9). But such estimates of overall abundance must be treated cautiously as the multiplier incorporates estimates of population parameters not available for A. forsteri. Most of the population (77%) is in central South Australian waters (from Kangaroo Island to the southern end of Eyre Peninsula). With the estimate of 100 for a breeding colony in southern Tasmania, the population of New Zealand fur seals in Australia can be estimated at 34700. Historical aspects of some colonies are outlined and evidence for increases described. The largest breeding localities are at South Neptune Islands (1964 pups) and North Neptune Islands (1472). The combined Neptunes group accounts for 49% of the pup estimate for Australia. One-fifth of the pups are from colonies on Kangaroo Island and the nearby Casuarinas.

Steady as he goes: at-sea movement of adult male Australian sea lions in a dynamic marine environment

The southern coastline of Australia forms part of the worlds' only northern boundary current system. The Bonney Upwelling occurs every austral summer along the south-eastern South Australian coastline, a region that hosts over 80% of the worlds population of an endangered endemic otariid, the Australian sea lion. We present the first data on the movement characteristics and foraging behaviour of adult male Australian sea lions across their South Australian range. Synthesizing telemetric, oceanographic and isotopic datasets collected from seven individuals enabled us to characterise individual foraging behaviour over an approximate two year time period. Data suggested seasonal variability in stable carbon and nitrogen isotopes that could not be otherwise explained by changes in animal movement patterns. Similarly, animals did not change their foraging patterns despite fine-scale spatial and temporal variability of the upwelling event. Individual males tended to return to the same colony at which they were tagged and utilized the same at-sea regions for foraging irrespective of oceanographic conditions or time of year. Our study contrasts current general assumptions that male otariid life history strategies should result in greater dispersal, with adult male Australian sea lions displaying central place foraging behaviour similar to males of other otariid species in the region.

Lower reproductive success in hybrid fur seal males indicates fitness costs to hybridization

Hybridization among organisms can potentially contribute to the processes of evolution, but this depends on the fitness of hybrids relative to parental species. A small, recently formed population of fur seals on subantarctic Macquarie Island contains a high proportion of hybrids (17-30%) derived from combinations of three parental species: Antarctic, subantarctic and New Zealand fur seals. Mitochondrial control-region data (restriction fragment length polymorphisms) and nine microsatellites were used to determine the species composition of breeding adults, and hybrid male fitness was measured by comparing reproductive success (number of genetically inferred paternities) of hybrid and pure-species territory males over 6 years. No correlations were found between male reproductive success and three genetic measures of outbreeding, but this may be due to a relatively small number of dominant males analysed. Territory males fathered 63% of pups, but hybrid males had lower reproductive success than pure-species males despite having the same ability to hold territories. A greater proportion of females in hybrid male territories conceived extra-territorially than those in territories of pure-species males, and most (70 of 82) mated with conspecifics. This suggests the presence of reproductive isolating mechanisms that promote positive assortative mating and reduce the production of hybrid offspring. Although we found no evidence for male sterility in the population, mechanisms that reduce lifetime reproductive success may act to decrease the frequency of hybrids. Our study has identified a disadvantage of hybridization - reduced reproductive success of hybrid sons - that may be contributing to the persistence of pure lineages at Macquarie Island and the temporal decline in hybridization observed there.

Demographic histories and genetic diversity across pinnipeds are shaped by human exploitation, ecology and life-history

A central paradigm in conservation biology is that population bottlenecks reduce genetic diversity and population viability. In an era of biodiversity loss and climate change, understanding the determinants and consequences of bottlenecks is therefore an important challenge. However, as most studies focus on single species, the multitude of potential drivers and the consequences of bottlenecks remain elusive. Here, we combined genetic data from over 11,000 individuals of 30 pinniped species with demographic, ecological and life history data to evaluate the consequences of commercial exploitation by 18th and 19th century sealers. We show that around one third of these species exhibit strong signatures of recent population declines. Bottleneck strength is associated with breeding habitat and mating system variation, and together with global abundance explains much of the variation in genetic diversity across species. Overall, bottleneck intensity is unrelated to IUCN status, although the three most heavily bottlenecked species are endangered. Our study reveals an unforeseen interplay between human exploitation, animal biology, demographic declines and genetic diversity.

Historical hunting has caused documented declines in pinnipeds, but the extent to which hunting caused genetic bottlenecks among species was unknown. Here, the authors show evidence of severe bottlenecks in several pinniped species, particularly those that breed on land.

Breeding biology and haul-out pattern of the New Zealand fur seal, Arctopehalus forsteri, at Cape Gantheaume, South Australia

New Zealand fur seals, Arctocephalus forsteri, breed at Cape Gantheaume (36�04'S,137�28'E), Kangaroo Island, South Australia, on broken rock platforms. In 1988-89, pups were born between late November and mid-January, 90% of them over 34 days between 3 December and 6 January. The median date of birth was 21 December. A re-analysis of data for this species from three breeding seasons at the Open Bay Islands (South Island, New Zealand, 43�52'S,l68�53'E) indicates that: (i) the breeding season at Cape Gantheaume occurs 5-12 days later than at the Open Bay Islands, (ii) the period containing 90% of births was the same duration for both populations, and (iii) the median date of birth spanned seven days in three seasons at the Open Bay Islands. In addition, the timing and duration of the pupping season varied within the Cape Gantheaume colony, it being later in recently colonised areas. We suggest that this pattern is a consequence of changes in the age distribution of females through the colony. The sex ratio of pups born in the colony over four breeding seasons did not differ significantly from 1:l. Females were mated on average 7.4 days after birth and left for sea 2.3 days later. The mean date of observed matings was 29 December; copulations lasted about 13 min. The operational sex ratio (OSR) in the colony was 8.6 females per territorial male (the maximum ratio of territorial males to pups was 1:16), which was within the range reported for other southern fur seal species. In two consecutive breeding seasons, the estimated fecundity rate of adult females averaged 67%. Non-breeding animals (sub-adult males, juveniles and yearlings) occurred in areas not occupied by breeding animals. The number of juveniles ashore increased after the breeding season, but no pattern was found for sub-adults and yearlings. Yearlings were uncommon in the colony at all times; it is suggested that they are mostly pelagic and do not moult in their second year.

Assessing morphological and DNA-based diet analysis techniques in a generalist predator, the arrow squid Nototodarus gouldi

Establishing the diets of marine generalist consumers is difficult, with most studies limited to the use of morphological methods for prey identification. Such analyses rely on the preservation of diagnostic hard parts, which can limit taxonomic resolution and introduce biases. DNA-based analyses provide a method to assess the diets of marine species, potentially overcoming many of the limitations introduced by other techniques. This study compared the effectiveness of morphological and DNA-based analysis for determining the diet of a free-ranging generalist predator, the arrow squid (Nototodarus gouldi). A combined approach was more effective than using either of the methods in isolation. Nineteen unique prey taxa were identified, of which six were found by both methods, 10 were only detected using DNA and three were only identified using morphological methods. Morphological techniques only found 50% of the total number of identifiable prey taxa, whereas DNA-based techniques found 84%. This study highlights the benefits of using a combination of techniques to detect and identify prey of generalist marine consumers.

Variation in the mitochondrial control region in the Juan Fernández fur seal (Arctocephalus philippii)

The Juan Fernandez fur seal (Arctocephalus philippii was allegedly extremely abundant, numbering as many as 4 million prior to sealing which continued from the late 17th to the late 19th century. By the end of the sealing era the species was thought to be extinct until they were rediscovered at Alejandro Selkirk Island in 1965. Historic records would suggest that the species underwent a substantial population bottleneck as a result of commercial sealing, and from population genetic theory we predicted that the genetic variability in the species would be low. We compared the mtDNA control region sequence from 28 Juan Fernandez fur seals from two islands in the Juan Fernandez Archipelago (Chile). Contrary to expectation, we found that variation in the Juan Fernandez fur seals is not greatly reduced in comparison to other pinniped taxa, especially given the apparent severity of the bottleneck they underwent. We also determined minor, but significantly different haplotype frequencies among the populations on the two islands (Alejandro Selkirk and Robinson Crusoe Islands), but no difference in their levels of variability. Such differences may have arisen stochastically via a recent founder event from Alejandro Selkirk to Robinson Crusoe Island or subsequent genetic drift.

Artificial Intelligence: Guidance for clinical imaging and therapeutic radiography professionals, a summary by the Society of Radiographers AI working group

INTRODUCTION

Artificial intelligence (AI) has started to be increasingly adopted in medical imaging and radiotherapy clinical practice, however research, education and partnerships have not really caught up yet to facilitate a safe and effective transition. The aim of the document is to provide baseline guidance for radiographers working in the field of AI in education, research, clinical practice and stakeholder partnerships. The guideline is intended for use by the multi-professional clinical imaging and radiotherapy teams, including all staff, volunteers, students and learners.

METHODS

The format mirrored similar publications from other SCoR working groups in the past. The recommendations have been subject to a rapid period of peer, professional and patient assessment and review. Feedback was sought from a range of SoR members and advisory groups, as well as from the SoR director of professional policy, as well as from external experts. Amendments were then made in line with feedback received and a final consensus was reached.

RESULTS

AI is an innovative tool radiographers will need to engage with to ensure a safe and efficient clinical service in imaging and radiotherapy. Educational provisions will need to be proportionately adjusted by Higher Education Institutions (HEIs) to offer the necessary knowledge, skills and competences for diagnostic and therapeutic radiographers, to enable them to navigate a future where AI will be central to patient diagnosis and treatment pathways. Radiography-led research in AI should address key clinical challenges and enable radiographers co-design, implement and validate AI solutions. Partnerships are key in ensuring the contribution of radiographers is integrated into healthcare AI ecosystems for the benefit of the patients and service users.

CONCLUSION

Radiography is starting to work towards a future with AI-enabled healthcare. This guidance offers some recommendations for different areas of radiography practice. There is a need to update our educational curricula, rethink our research priorities, forge new strong clinical-academic-industry partnerships to optimise clinical practice. Specific recommendations in relation to clinical practice, education, research and the forging of partnerships with key stakeholders are discussed, with potential impact on policy and practice in all these domains. These recommendations aim to serve as baseline guidance for UK radiographers.

IMPLICATIONS FOR PRACTICE

This review offers the most up-to-date recommendations for clinical practitioners, researchers, academics and service users of clinical imaging and therapeutic radiography services. Radiography practice, education and research must gradually adjust to AI-enabled healthcare systems to ensure gains of AI technologies are maximised and challenges and risks are minimised. This guidance will need to be updated regularly given the fast-changing pace of AI development and innovation.

Maternal strategies of the New Zealand fur seal: evidence for interannual variability in provisioning and pup growth strategies

Maternal attendance, nursing behaviour, pup growth and weaning age were investigated in the New Zealand fur seal (Arctocephalus forsteri) at Kangaroo Island, South Australia. Foraging trips to sea increased throughout lactation (5.9–9.8 days), while the duration of shore attendance bouts (1.7 ± 0.7 days) remained unchanged, resulting in time ashore declining from 24% to 14% throughout lactation. Mothers with sons made longer foraging trips than mothers with daughters throughout lactation and, as a consequence, maternal time ashore was less for sons (21%) than for daughters (28%). Pups maintained an overall sucking-rate of 1.4 h day–1 throughout their mothers’ lactation, by sucking more frequently and for longer periods as their mother became less available. Because mothers with daughters were ashore more frequently, the overall sucking-rate of females (1.7 h day–1) was greater than that of male pups (1.1 h day–1). The growth patterns of male and female pups from two cohorts were similar, but males grew faster and weaned heavier in one of the years. Age at weaning was ~285 days (9.4 months). This study indicates some significant differences in the nature of maternal expenditure in male and female pups, and the growth strategies used by pups both within and between years.

Changes in the abundance of New Zealand fur seals, Arctocephalus forsteri, on Kangaroo Island, South Australia

Kangaroo Island was an important seal-harvesting site during the early years of European colonisation of Australia. A recent survey of the New Zealand fur seal, Arctocephalus forsteri, in South and Western Australia indicates that Kangaroo I. is still an important centre for the species. In order to determine changes in the abundance of the population, numbers of pups were determined at four colonies on Kangaroo Island by mark-recapture in up to five breeding seasons from 1988-89 to 1992-93. Clipping was the preferred technique for mark-recapture estimation of pups because it was quick, easy and effective. Recaptures were conducted visually; they were repeated several times in each season to improve precision of the estimates. No pups were marked between recaptures in order to minimise disturbance. Assumptions made in estimating population size by the mark-recapture technique pertinent to this study are reviewed. Pup numbers increased at three colonies: at Cape Gantheaume, from 458 to 867 over five years (with exponential rate of increase r = 0.16, n = 5); at Nautilus North, from 182 to 376 over five years (at r = 0.19, n = 4); and at North Casuarina Islet, from 442 to 503 over four years (at r = 0.043, n = 2). Rates of increase in the first two colonies are similar to those at the most rapidly increasing fur seal populations in the Southern Hemisphere. The Kangaroo I. population is estimated to be 10000 animals in 1992-93. It is likely to be at the recolonisation phase of growth, with high rates of increase at individual colonies (or parts of colonies) resulting from local immigration. As space does not appear to be limiting expansion in these colonies, fur seal numbers may continue to increase there.

Dietary analysis of regurgitates and stomach samples from free-living Australian sea lions

Dietary remains recovered from Australian sea lion (Neophoca cinerea) digestive tracts and regurgitate samples from Seal Bay (Kangaroo Island, South Australia) were used to identify prey species consumed. Four of eight digestive tracts collected (50%) contained prey items located only in the stomach. On the basis of biomass reconstruction of cephalopod prey remains, octopus contributed 40% of the biomass in the samples, giant cuttlefish (Sepia apama) contributed 30% and ommastrephid squids contributed 14% biomass. The remains of several fish species were found in the samples: leatherjacket (Monocanthidae), flathead (Platycephalus sp.), swallowtail (Centroberyx lineatus), common bullseye (Pempheris multiradiata), southern school whiting (Sillago flindersi) and yellowtail mackerel (Trachurus novaezelandiae). Southern rock lobster (Jasus edwardsii) and swimming crab (Ovalipes australiensis) carapace fragments, little penguin (Eudyptula minor) feathers and bones and shark egg cases (oviparous species and Scyliorhinidae sp.) were also identified.

The ontogeny of diving behaviour in New Zealand fur seal pups (Arctocephalus forsteri)

This study investigated the development of diving in 21 New Zealand fur seal pups, Arctocephalus forsteri (Lesson, 1828), prior to weaning at Cape Gantheaume, Kangaroo Island. Diving behaviour was examined using time–depth recorders, which were deployed during two time periods, 5 months prior to weaning (n = 6) and 2 months prior to weaning (n = 15). Scats were also examined to assess whether fur seal pups foraged prior to weaning. The maximum dive depth attained was 44 m, while the maximum dive duration was 3.3 min. Immediately prior to weaning, fur seal pups spent a greater proportion of their time diving at night, and concomitantly several measures of diving performance also increased. In general, pups dived successively deeper (6–44 m between June and September), and the average number of dives per day, dive frequency, and vertical distance travelled increased. Prey remains were present in approximately 30% of scats and indicated that some pups were foraging as early as June (5–6 months of age, approximately 4–5 months prior to weaning). Of the scats that contained prey remains, fish (South American pilchard, Sardinops sagax (Jenyns, 1842); Australian anchovy, Engraulis australis (White, 1790); and redbait, Emmelichthys nitidus Richardson, 1845) accounted for 43% of the prey items found, crustaceans accounted for 36%, and cephalopods (Gould's squid, Nototodarus gouldi (McCoy, 1888)) accounted for 20%.