Photographic database of the European cave salamanders, genus Hydromantes

European Hydromantes are a group of eight salamander species often occurring in subterranean habitats, which are a difficult environment to explore. All Hydromantes are strictly protected species and thus, low-impact methodologies to study these salamanders are strongly needed. Here we used a photographic technique to produce a large dataset of European Hydromantes, providing standardised pictures of 1,052 individuals belonging to the eight species, including hybrids as well. With our methodology we were able to reduce the handling time of individuals, and produce high quality pictures useful to investigate multiple life traits of these endangered species. Furthermore, the standardised photos provided here can be used for future comparisons of individuals from the surveyed populations.

Long-term drivers of persistence and colonization dynamics in spatially structured amphibian populations

Many organisms live in networks of local populations connected by dispersing individuals, called spatially structured populations (SSPs), where the long-term persistence of the entire network is determined by the balance between 2 processes acting at the scale of local populations: extinction and colonization. When multiple threats act on an SSP, a comparison of the different factors determining local extinctions and colonizations is essential to plan sound conservation actions. We assessed the drivers of long-term population dynamics of multiple amphibian species at the regional scale. We used dynamic occupancy models within a Bayesian framework to identify the factors determining persistence and colonization of local populations. Because connectivity among patches is fundamental to SSPs dynamics, we considered 2 measures of connectivity acting on each focal patch: incidence of the focal species and incidence of invasive crayfish. We used meta-analysis to summarize the effect of different drivers at the community level. Persistence and colonization of local populations were jointly determined by factors acting at different scales. Persistence probability was positively related to the area and the permanence of wetlands, whereas it was negatively related to occurrence of fish. Colonization probability was highest in semipermanent wetlands and in sites with a high incidence of the focal species in nearby sites, whereas it showed a negative relationship with the incidence of invasive crayfish in the landscape. By analyzing long-term data on amphibian population dynamics, we found a strong effect of some classic features commonly used in SSP studies, such as patch area and focal species incidence. The presence of an invasive non-native species at the landscape scale emerged as one of the strongest drivers of colonization dynamics, suggesting that studies on SSPs should consider different connectivity measures more frequently, such as the incidence of predators, especially when dealing with biological invasions.

The post hoc measurement as a safe and reliable method to age and size plethodontid salamanders

The worldwide biodiversity crisis with the resulting need to increase species protection has led researchers to pursue and select survey methods that guarantee the best quality of data and produce the least negative effects on wild animals. Plethodontids are the most diverse family of salamanders; all species are very sensitive to human handling and noninvasive, but accurate, measurement methods are needed to reduce researchers' impact. Here, we tested the reliability of a noninvasive post hoc method in estimating the snout-vent length (SVL) from photographs showing salamanders' dorsal view. The correlation between the estimated snout-vent length (SVLe) and the conventional SVL was high (R 2 m  = .81), and no significant difference occurred between operators with different experience. Finally, we list the numerous advantages for the use of SVLe in terms of data quality and in reducing the stress caused to wild animals.

Describing functional diversity of communities from environmental DNA

Comprehensive assessments of functional diversity are needed to understand ecosystem alterations under global changes. The 'Fun-eDNA' approach characterises functional diversity by assigning traits to taxonomic units obtained through environmental DNA (eDNA) sampling. By simultaneously analysing an unprecedented number of taxa over broad spatial scales, the approach provides a whole-ecosystem perspective of functional diversity. Fun-eDNA is increasingly used to tackle multiple questions, but aligning eDNA with traits poses several conceptual and technical challenges. Enhancing trait databases, improving the annotation of eDNA-based taxonomic inventories, interdisciplinary collaboration, and conceptual harmonisation of traits are key steps to achieve a comprehensive assessment of diverse taxa. Overcoming these challenges can unlock the full potential of eDNA in leveraging measures of ecosystem functions from multi-taxa assessments.

Functional changes of protist communities in soil after glacier retreat

Soil hosts key components of terrestrial biodiversity providing essential services to the below- and above-ground ecosystems. The worldwide retreat of glaciers is exposing new deglaciated terrains, offering a unique opportunity to understand the development of soil ecosystems under a changing climate. Many studies have investigated how biotic communities change after deglaciation, but protists have often been overlooked despite their key role in multiple ecosystem functions. Here, we aim to understand how protist communities develop along glacier forelands, describing their successional trajectories. Protist communities were characterized in 1251 soil samples from 46 glacier forelands across four continents. We used environmental DNA metabarcoding to identify the Molecular Operational Taxonomic Units (MOTUs) of protists based on a universal eukaryotic marker. The detected MOTUs were combined with information on multiple traits to assess how the functional diversity and composition of protist communities vary through time. Immediately after glacier retreat, protist communities are like those of polar and high-altitude habitats, with consumers being the dominant trophic group, followed by a relevant presence of phototrophs, while parasites were underrepresented. Over the succession, we detected an increase in taxonomic and functional diversity, but some highly specialized groups (e.g. phototrophic algae) declined. The use of a trait-based approach allowed us to identify distinct successional patterns depending on functional groups. Through the functional characterization of a crucial but understudied component of soil biotic communities, our study added one of the final pieces needed to predict how soil ecosystems will develop in the rapidly changing environment of glacier forelands.

Decline and Extinction of the Italian Agile Frog Rana latastei from Core Areas of Its Range

Detecting the trends of species and populations is fundamental to identifying taxa with high conservation priority. Unfortunately, long-term monitoring programs are challenging and often lacking. The Italian agile frog Rana latastei is endemic to Northern Italy and adjacent countries, is considered vulnerable by the IUCN, and is protected at the European level. However, quantitative estimates of its decline are extremely scarce. In this study, we document the trends in abundance and distribution of Rana latastei within Monza Park, which currently represents the area closer to the type locality of the species and holds unique genetic features. Wetlands within the park were monitored from 2000 to 2023; counts of egg clutches were taken as a measure of reproductive output and the abundance of breeding females. In 2000, the species occurred over a significant proportion of the park. Total abundance showed strong yearly variation but remained rather constant from 2000 to 2019. However, Rana latastei disappeared from the park around 2021 and was never detected in 2022-2023. The decline is probably related to the joint effect of multiple factors, including the conversion of breeding sites for farming, inappropriate water management, invasive alien species, and severe drought. The local extinction of Rana latastei occurred despite legal protection, highlighting the need for more effective and stringent tools for the conservation of European biodiversity.