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Das S, Abou-Haidar R, Rabalais H, Sun SDLW, Rosli Z, Chatpar K, Boivin MN, Tabatabaei M, Rogers C, Legault M, Lo D, Degroot C, Dagher A, Dyke SOM, Durcan TM, Seyller A, Doyon J, Poupon V, Fon EA, Genge A, Rouleau GA, Karamchandani J, Evans AC. The C-BIG Repository: an Institution-Level Open Science Platform. Neuroinformatics 2022; 20:139-153. [PMID: 34003431 PMCID: PMC9537233 DOI: 10.1007/s12021-021-09516-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/16/2021] [Indexed: 01/07/2023]
Abstract
In January 2016, the Montreal Neurological Institute-Hospital (The Neuro) declared itself an Open Science organization. This vision extends beyond efforts by individual scientists seeking to release individual datasets, software tools, or building platforms that provide for the free dissemination of such information. It involves multiple stakeholders and an infrastructure that considers governance, ethics, computational resourcing, physical design, workflows, training, education, and intra-institutional reporting structures. The C-BIG repository was built in response as The Neuro's institutional biospecimen and clinical data repository, and collects biospecimens as well as clinical, imaging, and genetic data from patients with neurological disease and healthy controls. It is aimed at helping scientific investigators, in both academia and industry, advance our understanding of neurological diseases and accelerate the development of treatments. As many neurological diseases are quite rare, they present several challenges to researchers due to their small patient populations. Overcoming these challenges required the aggregation of datasets from various projects and locations. The C-BIG repository achieves this goal and stands as a scalable working model for institutions to collect, track, curate, archive, and disseminate multimodal data from patients. In November 2020, a Registered Access layer was made available to the wider research community at https://cbigr-open.loris.ca , and in May 2021 fully open data will be released to complement the Registered Access data. This article outlines many of the aspects of The Neuro's transition to Open Science by describing the data to be released, C-BIG's full capabilities, and the design aspects that were implemented for effective data sharing.
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Affiliation(s)
- Samir Das
- grid.14709.3b0000 0004 1936 8649McGill Centre for Integrative Neuroscience, McGill University, Montréal, Québec, Canada ,grid.416102.00000 0004 0646 3639Montreal Neurological Institute-Hospital, Montreal, Quebec, Canada ,grid.416102.00000 0004 0646 3639McConnell Brain Imaging Centre, Montreal Neurological Institute-Hospital, Montreal, Quebec, Canada
| | - Rida Abou-Haidar
- grid.14709.3b0000 0004 1936 8649McGill Centre for Integrative Neuroscience, McGill University, Montréal, Québec, Canada ,grid.416102.00000 0004 0646 3639Montreal Neurological Institute-Hospital, Montreal, Quebec, Canada
| | - Henri Rabalais
- grid.14709.3b0000 0004 1936 8649McGill Centre for Integrative Neuroscience, McGill University, Montréal, Québec, Canada ,grid.416102.00000 0004 0646 3639Montreal Neurological Institute-Hospital, Montreal, Quebec, Canada
| | - Sonia Denise Lai Wing Sun
- grid.416102.00000 0004 0646 3639Montreal Neurological Institute-Hospital, Montreal, Quebec, Canada ,grid.14709.3b0000 0004 1936 8649Clinical Research Unit, McGill University, Montreal, Quebec, Canada
| | - Zaliqa Rosli
- grid.14709.3b0000 0004 1936 8649McGill Centre for Integrative Neuroscience, McGill University, Montréal, Québec, Canada ,grid.416102.00000 0004 0646 3639Montreal Neurological Institute-Hospital, Montreal, Quebec, Canada
| | - Krishna Chatpar
- grid.14709.3b0000 0004 1936 8649McGill Centre for Integrative Neuroscience, McGill University, Montréal, Québec, Canada ,grid.416102.00000 0004 0646 3639Montreal Neurological Institute-Hospital, Montreal, Quebec, Canada
| | - Marie-Noëlle Boivin
- grid.416102.00000 0004 0646 3639Montreal Neurological Institute-Hospital, Montreal, Quebec, Canada
| | - Mahdieh Tabatabaei
- grid.416102.00000 0004 0646 3639Montreal Neurological Institute-Hospital, Montreal, Quebec, Canada
| | - Christine Rogers
- grid.14709.3b0000 0004 1936 8649McGill Centre for Integrative Neuroscience, McGill University, Montréal, Québec, Canada ,grid.416102.00000 0004 0646 3639Montreal Neurological Institute-Hospital, Montreal, Quebec, Canada
| | - Melanie Legault
- grid.14709.3b0000 0004 1936 8649McGill Centre for Integrative Neuroscience, McGill University, Montréal, Québec, Canada ,grid.416102.00000 0004 0646 3639Montreal Neurological Institute-Hospital, Montreal, Quebec, Canada
| | - Derek Lo
- grid.14709.3b0000 0004 1936 8649McGill Centre for Integrative Neuroscience, McGill University, Montréal, Québec, Canada ,grid.416102.00000 0004 0646 3639Montreal Neurological Institute-Hospital, Montreal, Quebec, Canada
| | - Clotilde Degroot
- grid.416102.00000 0004 0646 3639Montreal Neurological Institute-Hospital, Montreal, Quebec, Canada
| | - Alain Dagher
- grid.416102.00000 0004 0646 3639Montreal Neurological Institute-Hospital, Montreal, Quebec, Canada ,grid.416102.00000 0004 0646 3639McConnell Brain Imaging Centre, Montreal Neurological Institute-Hospital, Montreal, Quebec, Canada
| | - Stephanie O. M. Dyke
- grid.14709.3b0000 0004 1936 8649McGill Centre for Integrative Neuroscience, McGill University, Montréal, Québec, Canada ,grid.416102.00000 0004 0646 3639Montreal Neurological Institute-Hospital, Montreal, Quebec, Canada ,grid.14709.3b0000 0004 1936 8649Department of Neurology and Neurosurgery, McGill University, Montreal, Quebec, Canada
| | - Thomas M. Durcan
- grid.14709.3b0000 0004 1936 8649Clinical Research Unit, McGill University, Montreal, Quebec, Canada ,grid.416102.00000 0004 0646 3639Early Drug Discovery Unit (EDDU), Montreal Neurological Institute-Hospital, Montreal, Quebec, Canada
| | - Annabel Seyller
- grid.416102.00000 0004 0646 3639Montreal Neurological Institute-Hospital, Montreal, Quebec, Canada
| | - Julien Doyon
- grid.416102.00000 0004 0646 3639Montreal Neurological Institute-Hospital, Montreal, Quebec, Canada ,grid.416102.00000 0004 0646 3639McConnell Brain Imaging Centre, Montreal Neurological Institute-Hospital, Montreal, Quebec, Canada
| | - Viviane Poupon
- grid.416102.00000 0004 0646 3639Montreal Neurological Institute-Hospital, Montreal, Quebec, Canada
| | - Edward A. Fon
- grid.416102.00000 0004 0646 3639Montreal Neurological Institute-Hospital, Montreal, Quebec, Canada ,grid.14709.3b0000 0004 1936 8649Department of Neurology and Neurosurgery, McGill University, Montreal, Quebec, Canada
| | - Angela Genge
- grid.416102.00000 0004 0646 3639Montreal Neurological Institute-Hospital, Montreal, Quebec, Canada ,grid.14709.3b0000 0004 1936 8649Clinical Research Unit, McGill University, Montreal, Quebec, Canada
| | - Guy A. Rouleau
- grid.416102.00000 0004 0646 3639Montreal Neurological Institute-Hospital, Montreal, Quebec, Canada
| | - Jason Karamchandani
- grid.416102.00000 0004 0646 3639Montreal Neurological Institute-Hospital, Montreal, Quebec, Canada ,grid.14709.3b0000 0004 1936 8649Clinical Research Unit, McGill University, Montreal, Quebec, Canada
| | - Alan C. Evans
- grid.14709.3b0000 0004 1936 8649McGill Centre for Integrative Neuroscience, McGill University, Montréal, Québec, Canada ,grid.416102.00000 0004 0646 3639Montreal Neurological Institute-Hospital, Montreal, Quebec, Canada ,grid.416102.00000 0004 0646 3639McConnell Brain Imaging Centre, Montreal Neurological Institute-Hospital, Montreal, Quebec, Canada
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