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Voeikova TA, Kuligin VS, Zhuravliova OA, Debabov VG. The Survival Characteristics of the E. coli K-12 Strain and Genetically Modified E. coli K-12 SGM2.0Pyc-int Strain in Natural and Anthropogenic Water and Soil Samples. APPL BIOCHEM MICRO+ 2022. [DOI: 10.1134/s0003683822090113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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Voeikova TA, Zhuravliova OA, Debabov VG. Comparative Analysis of Legal Regulation of Industrial Use of Genetic-Engineering-Modified Microorganisms in the United States, European Union, and Russian Federation. Mol Genet Microbiol Virol 2020. [DOI: 10.3103/s0891416820020123] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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Voeikova TA, Zhuravliova OA, Kuligin VS, Kozhukhova EI, Ivanov EV, Debabov VG. Microbial Synthesis of Nanoparticles: Mechanisms, Characteristics, and Applications. Biophysics (Nagoya-shi) 2020. [DOI: 10.1134/s0006350920050218] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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Zhuravliova OA, Voeikova TA, Khaddazh MK, Bulushova NV, Ismagulova TT, Bakhtina AV, Gusev SA, Gritskova IA, Lupanova TN, Shaitan KV, Debabov VG. Bacterial Synthesis of Cadmium and Zinc Sulfide Nanoparticles: Characteristics and Prospects of Application. Mol Genet Microbiol Virol 2019. [DOI: 10.3103/s0891416818040092] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Voeikova TA, Zhuravliova OA, Gracheva TS, Bulushova NV, Ismagulova TT, Shaitan KV, Debabov VG. Optimization of Microbial Synthesis of Silver Sulfide Nanoparticles. APPL BIOCHEM MICRO+ 2019. [DOI: 10.1134/s0003683818080070] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Gagkaeva ZV, Zhukova ES, Grinenko V, Grebenko AK, Sidoruk KV, Voeikova TA, Dressel M, Gorshunov BP. Terahertz-infrared spectroscopy of Shewanella oneidensis MR-1 extracellular matrix. J Biol Phys 2018; 44:401-417. [PMID: 29732506 PMCID: PMC6082806 DOI: 10.1007/s10867-018-9497-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2017] [Accepted: 04/13/2018] [Indexed: 01/30/2023] Open
Abstract
Employing optical spectroscopy we have performed a comparative study of the dielectric response of extracellular matrix and filaments of electrogenic bacteria Shewanella oneidensis MR-1, cytochrome c, and bovine serum albumin. Combining infrared transmission measurements on thin layers with data of the terahertz spectra, we obtain the dielectric permittivity and AC conductivity spectra of the materials in a broad frequency band from a few cm-1 up to 7000 cm-1 in the temperature range from 5 to 300 K. Strong absorption bands are observed in the three materials that cover the range from 10 to 300 cm-1 and mainly determine the terahertz absorption. When cooled down to liquid helium temperatures, the bands in Shewanella oneidensis MR-1 and cytochrome c reveal a distinct fine structure. In all three materials, we identify the presence of liquid bound water in the form of librational and translational absorption bands at ≈ 200 and ≈ 600 cm-1, respectively. The sharp excitations seen above 1000 cm-1 are assigned to intramolecular vibrations.
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Affiliation(s)
- Z V Gagkaeva
- Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, Russia
| | - E S Zhukova
- Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, Russia
| | - V Grinenko
- Institute for Metallic Materials, IFW Dresden, Dresden, Germany
| | - A K Grebenko
- Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, Russia
| | - K V Sidoruk
- Scientific Center of Russian Federation Research Institute for Genetics and Selection of Industrial Microorganisms, Moscow, Russia
| | - T A Voeikova
- Scientific Center of Russian Federation Research Institute for Genetics and Selection of Industrial Microorganisms, Moscow, Russia
| | - M Dressel
- Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, Russia
- Physikalisches Institut, Universität Stuttgart, Stuttgart, Germany
| | - B P Gorshunov
- Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, Russia.
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Voeikova TA, Zhuravliova OA, Bulushova NV, Veiko VP, Ismagulova TT, Lupanova TN, Shaitan KV, Debabov VG. The “Protein Corona” of Silver-Sulfide Nanoparticles Obtained Using Gram-Negative and -Positive Bacteria. Mol Genet Microbiol Virol 2018. [DOI: 10.3103/s0891416817040103] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Motovilov KA, Savinov M, Zhukova ES, Pronin AA, Gagkaeva ZV, Grinenko V, Sidoruk KV, Voeikova TA, Barzilovich PY, Grebenko AK, Lisovskii SV, Torgashev VI, Bednyakov P, Pokorný J, Dressel M, Gorshunov BP. Observation of dielectric universalities in albumin, cytochrome C and Shewanella oneidensis MR-1 extracellular matrix. Sci Rep 2017; 7:15731. [PMID: 29147016 PMCID: PMC5691187 DOI: 10.1038/s41598-017-15693-y] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2017] [Accepted: 10/31/2017] [Indexed: 11/09/2022] Open
Abstract
The electrodynamics of metals is well understood within the Drude conductivity model; properties of insulators and semiconductors are governed by a gap in the electronic states. But there is a great variety of disordered materials that do not fall in these categories and still respond to external field in an amazingly uniform manner. At radiofrequencies delocalized charges yield a frequency-independent conductivity σ 1(ν) whose magnitude exponentially decreases while cooling. With increasing frequency, dispersionless conductivity starts to reveal a power-law dependence σ 1(ν)∝ν s with s < 1 caused by hopping charge carriers. At low temperatures, such Universal Dielectric Response can cross over to another universal regime with nearly constant loss ε″∝σ1/ν = const. The powerful research potential based on such universalities is widely used in condensed matter physics. Here we study the broad-band (1-1012 Hz) dielectric response of Shewanella oneidensis MR-1 extracellular matrix, cytochrome C and serum albumin. Applying concepts of condensed matter physics, we identify transport mechanisms and a number of energy, time, frequency, spatial and temperature scales in these biological objects, which can provide us with deeper insight into the protein dynamics.
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Affiliation(s)
- K A Motovilov
- Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, Russia.
| | - M Savinov
- Institute of Physics AS CR, Praha 8, Czech Republic
| | - E S Zhukova
- Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, Russia
- A.M. Prokhorov General Physics Institute, RAS, Moscow, Russia
- 1. Physikalisches Institut, Universität Stuttgart, Stuttgart, Germany
| | - A A Pronin
- A.M. Prokhorov General Physics Institute, RAS, Moscow, Russia
| | - Z V Gagkaeva
- Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, Russia
| | - V Grinenko
- Institute for Metallic Materials, IFW Dresden, Dresden, Germany
| | - K V Sidoruk
- Scientific Center of Russian Federation Research Institute for Genetics and Selection of Industrial Microorganisms, Moscow, Russia
| | - T A Voeikova
- Scientific Center of Russian Federation Research Institute for Genetics and Selection of Industrial Microorganisms, Moscow, Russia
| | - P Yu Barzilovich
- Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, Russia
| | - A K Grebenko
- Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, Russia
| | - S V Lisovskii
- Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, Russia
| | | | - P Bednyakov
- Institute of Physics AS CR, Praha 8, Czech Republic
| | - J Pokorný
- Institute of Physics AS CR, Praha 8, Czech Republic
| | - M Dressel
- 1. Physikalisches Institut, Universität Stuttgart, Stuttgart, Germany
- Moscow Institute of Physics and Technology, Institutsky lane 9, Dolgoprudny, Moscow, 141701, Russia
| | - B P Gorshunov
- Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, Russia.
- A.M. Prokhorov General Physics Institute, RAS, Moscow, Russia.
- 1. Physikalisches Institut, Universität Stuttgart, Stuttgart, Germany.
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Voeikova TA, Shebanova AS, Ivanov YD, Kaysheva AL, Novikova LM, Zhuravliova OA, Shumyantseva VV, Shaitan KV, Kirpichnikov MP, Debabov VG. The role of proteins of the outer membrane of Shewanella oneidensis MR-1 in the formation and stabilization of silver sulfide nanoparticles. APPL BIOCHEM MICRO+ 2017. [DOI: 10.1134/s0003683816080081] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Shumyantseva VV, Shebanova AS, Chalenko YM, Voeikova TA, Kirpichnikov MP, Shaitan KV, Debabov VG. Electroanalysis of Shewanella oneidensis MR-1. DOKL BIOCHEM BIOPHYS 2015; 464:325-8. [PMID: 26518560 DOI: 10.1134/s1607672915050154] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2015] [Indexed: 11/22/2022]
Abstract
Electrochemical parameters of bacterial cells Shewanella oneidensis MR-1 were investigated. For registration of the direct electron transfer between S. oneidensis MR-1 and electrode, bacterial cells were pretreated with didodecyldimethylammonium bromide (DDAB), a synthetic membrane-like substance of polycationic nature that exhibits membrane-loosening properties. Such pretreatment of S. oneidensis MR-1 allowed increasing the efficiency of extracellular electron transfer by the proteobacterium due to better availability of electroactive proteins for registration of electron transfer processes. The electroanalysis of bacterial cells S. oneidensis MR-1 under anaerobic conditions allows registering redox-active proteins and biomolecules in the range of potentials of-0.40,-0.16, and-0 V, which corresponds to flavohemoproteins, quinone derivatives, and c-type cytochromes of the external membrane of S. oneidensis MR-1 cells.
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Affiliation(s)
- V V Shumyantseva
- Orekhovich Institute of Biomedical Chemistry of the Russian Academy of Medical Sciences, ul. Pogodinskaya 10/8, Moscow, 119121, Russia.
| | | | - Ya M Chalenko
- Orekhovich Institute of Biomedical Chemistry of the Russian Academy of Medical Sciences, ul. Pogodinskaya 10/8, Moscow, 119121, Russia
| | - T A Voeikova
- State Research Institute for Genetics and Selection of Industrial Microorganisms, 1 Dorozhnyi pr. 1, Moscow, 117545, Russia
| | | | - K V Shaitan
- Moscow State University, Moscow, 119991, Russia.,Semenov Institute of Chemical Physics, Russian Academy of Sciences, ul. Kosygina 4, Moscow, 119991, Russia
| | - V G Debabov
- State Research Institute for Genetics and Selection of Industrial Microorganisms, 1 Dorozhnyi pr. 1, Moscow, 117545, Russia
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Shebanova AS, Voeikova TA, Egorov AV, Novikova LM, Krestyanova IN, Emelyanova LK, Debabov VG, Kirpichnikov MP, Shaytan KV. Study of some aspects of the mechanism of bacterial synthesis of silver sulfide nanoparticles by metal-reducing bacteria Shewanella oneidensis MR-1. Biophysics (Nagoya-shi) 2014. [DOI: 10.1134/s0006350914030221] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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Mordkovich NN, Voeikova TA, Novikova LM, Smirnov IA, Il’in VK, Soldatov PE, Tyurin-Kuz’min AY, Smolenskaya TS, Veiko VP, Shakulov RS, Debabov VG. Effect of NAD+-dependent formate dehydrogenase on anaerobic respiration of Shewanella oneidensis MR-1. Microbiology (Reading) 2013. [DOI: 10.1134/s0026261713040061] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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Voeikova TA, Emel’yanova LK, Novikova LM, Shakulov RS, Sidoruk KV, Smirnov IA, Il’in VK, Soldatov PE, Tyurin-Kuz’min AY, Smolenskaya TS, Debabov VG. Intensification of bioelectricity generation in microbial fuel cells using Shewanella oneidensis MR-1 mutants with increased reducing activity. Microbiology (Reading) 2013. [DOI: 10.1134/s0026261713040139] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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Debabov VG, Voeikova TA, Shebanova AS, Shaitan KV, Emel’yanova LK, Novikova LM, Kirpichnikov MP. Bacterial synthesis of silver sulfide nanoparticles. ACTA ACUST UNITED AC 2013. [DOI: 10.1134/s1995078013020043] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Voeikova TA, Emel’yanova LK, Novikova LM, Mordkovich NN, Shakulov RS, Debabov VG. Mutants of an electrogenic bacterium Shewanella oneidensis MR-1 with increased reducing activity. Microbiology (Reading) 2012. [DOI: 10.1134/s0026261712030162] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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