Development of Medical Imaging Data Standardization for Imaging-Based Observational Research: OMOP Common Data Model Extension

The rapid growth of artificial intelligence (AI) and deep learning techniques require access to large inter-institutional cohorts of data to enable the development of robust models, e.g., targeting the identification of disease biomarkers and quantifying disease progression and treatment efficacy. The Observational Medical Outcomes Partnership Common Data Model (OMOP CDM) has been designed to accommodate a harmonized representation of observational healthcare data. This study proposes the Medical Imaging CDM (MI-CDM) extension, adding two new tables and two vocabularies to the OMOP CDM to address the structural and semantic requirements to support imaging research. The tables provide the capabilities of linking DICOM data sources as well as tracking the provenance of imaging features derived from those images. The implementation of the extension enables phenotype definitions using imaging features and expanding standardized computable imaging biomarkers. This proposal offers a comprehensive and unified approach for conducting imaging research and outcome studies utilizing imaging features.

Metamorphosis enhances the effects of metal exposure on the mayfly, Centroptilum triangulifer

The response of larval aquatic insects to stressors such as metals is used to assess the ecological condition of streams worldwide. However, nearly all larval insects metamorphose from aquatic larvae to winged adults, and recent surveys indicate that adults may be a more sensitive indicator of stream metal toxicity than larvae. One hypothesis to explain this pattern is that insects exposed to elevated metal in their larval stages have a reduced ability to successfully complete metamorphosis. To test this hypothesis we exposed late-instar larvae of the mayfly, Centroptilum triangulifer, to an aqueous Zn gradient (32-476 μg/L) in the laboratory. After 6 days of exposure, when metamorphosis began, larval survival was unaffected by zinc. However, Zn reduced wingpad development at concentrations above 139 μg/L. In contrast, emergence of subimagos and imagos tended to decline with any increase in Zn. At Zn concentrations below 105 μg/L (hardness-adjusted aquatic life criterion), survival between the wingpad and subimago stages declined 5-fold across the Zn gradient. These results support the hypothesis that metamorphosis may be a survival bottleneck, particularly in contaminated streams. Thus, death during metamorphosis may be a key mechanism explaining how stream metal contamination can impact terrestrial communities by reducing aquatic insect emergence.

Impaired Acroneuria sp. (Plecoptera, Perlidae) populations associated with aluminum contamination in neutral pH surface waters

Our aim was to quantify impairment to invertebrate predator populations, particularly to Acroneuria sp. (Plecoptera, Perlidae), downstream of an acid mine drainage-impacted tributary to the North Fork of the Powell River, southwestern Virginia. Predatory insects comprised 9.0 +/- 1.3% of the total abundance at the three stations upstream of the impacted tributary, but were significantly reduced (p = 0.0039) downstream (3.9 +/- 0.6%). Acroneuria sp. populations followed the same trend, with the upstream average (2.3 and 2.8%) being significantly higher (p < 0.05) than the downstream averages (0.2 and 0%) during 1999 and 2000, respectively. Using correlation analysis, we evaluated the relationship between the percent abundance of Acroneuria sp. throughout this reach and metal concentrations in water, sediment, and biological tissues (invertebrate predators and primary consumers). Water column aluminum (Al) concentration was the only parameter that was significantly correlated with percent Acroneuria sp. abundance, with correlation coefficients of -0.845 and -0.873 during 1999 and 2000, respectively. While this correlation exists, it may not indicate a causal relationship, and experiments should be conducted to determine the long-term toxicity of various Al species to perlid stoneflies.