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Orfanidou CG, Katsiani A, Candresse T, Marais A, Gkremotsi T, Drogoudi P, Kazantzis K, Katis NI, Maliogka VI. Identification of divergent isolates of cherry latent virus 1 in Greek sweet cherry orchards. Arch Virol 2023; 168:243. [PMID: 37676309 PMCID: PMC10485082 DOI: 10.1007/s00705-023-05875-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2023] [Accepted: 08/21/2023] [Indexed: 09/08/2023]
Abstract
In this study, samples collected from eight sweet cherry trees in northern Greece were analyzed by high-throughput sequencing for the presence of viruses. Bioinformatic analysis revealed the presence of divergent isolates of cherry latent virus 1 (CLV-1), a recently identified trichovirus in a sweet cherry accession imported into the USA from the Republic of Georgia. The complete genome sequences of seven CLV-1 isolates were determined, and phylogenetic analysis indicated that they belonged to a separate clade from the previously characterized Georgian isolate. A small-scale survey confirmed the presence of CLV-1 in 47 out of 151 sweet cherry samples tested, and partial sequencing of 15 isolates showed a high degree of nucleotide sequence similarity among them.
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Affiliation(s)
- Chrysoula G Orfanidou
- Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, Thessaloniki, 54124, Greece
| | - Asimina Katsiani
- Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, Thessaloniki, 54124, Greece
| | - Thierry Candresse
- Univ. Bordeaux, INRAE, UMR 1332 Biologie du Fruit et Pathologie, Villenave d'Ornon, France
| | - Armelle Marais
- Univ. Bordeaux, INRAE, UMR 1332 Biologie du Fruit et Pathologie, Villenave d'Ornon, France
| | - Theodora Gkremotsi
- Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, Thessaloniki, 54124, Greece
| | - Pavlina Drogoudi
- Department of Deciduous Fruit trees, Institute of Plant Breeding and Genetic Resources, Hellenic Agricultural Organization - 'DIMITRA', 38 R.R. Station, Naoussa, 59035, Greece
| | - Konstantinos Kazantzis
- Department of Deciduous Fruit trees, Institute of Plant Breeding and Genetic Resources, Hellenic Agricultural Organization - 'DIMITRA', 38 R.R. Station, Naoussa, 59035, Greece
| | - Nikolaos I Katis
- Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, Thessaloniki, 54124, Greece
| | - Varvara I Maliogka
- Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, Thessaloniki, 54124, Greece.
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