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Crowley L, University of Oxford and Wytham Woods Genome Acquisition Lab, Darwin Tree of Life Barcoding collective, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium. The genome sequence of the seven-spotted ladybird, Coccinella septempunctata Linnaeus, 1758. Wellcome Open Res 2021; 6:319. [PMID: 34877410 PMCID: PMC8630551 DOI: 10.12688/wellcomeopenres.17346.1] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/02/2021] [Indexed: 11/20/2022] Open
Abstract
We present a genome assembly from an individual female Coccinella septempunctata (the seven-spotted ladybird; Arthropoda; Insecta; Coleoptera; Coccinellidae). The genome sequence is 399 megabases in span. The majority (99.96%) of the assembly is scaffolded into 9 chromosomal pseudomolecules, with the X sex chromosome assembled.
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Streicher JW, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium. The genome sequence of the common frog, Rana temporaria Linnaeus 1758. Wellcome Open Res 2021; 6:286. [PMID: 35118201 PMCID: PMC8790709 DOI: 10.12688/wellcomeopenres.17296.1] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/13/2021] [Indexed: 12/03/2022] Open
Abstract
We present a genome assembly from an individual female Rana temporaria (the common frog; Chordata; Amphibia; Anura; Ranidae). The genome sequence is 4.11 gigabases in span. The majority of the assembly is scaffolded into 13 chromosomal pseudomolecules. Gene annotation of this assembly by the NCBI Eukaryotic Genome Annotation Pipeline has identified 23,707 protein coding genes.
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Streicher JW, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium. The genome sequence of the common toad, Bufo bufo (Linnaeus, 1758). Wellcome Open Res 2021; 6:281. [PMID: 35028424 PMCID: PMC8729185 DOI: 10.12688/wellcomeopenres.17298.1] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/13/2021] [Indexed: 11/21/2022] Open
Abstract
We present a genome assembly from an individual male Bufo bufo (the common toad; Chordata; Amphibia; Anura; Bufonidae). The genome sequence is 5.04 gigabases in span. The majority of the assembly (99.1%) is scaffolded into 11 chromosomal pseudomolecules. Gene annotation of this assembly by the NCBI Eukaryotic Genome Annotation Pipeline has identified 21,517 protein coding genes.
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Sinding MHS, Gopalakrishnan S, Raundrup K, Dalén L, Threlfall J, Darwin Tree of Life Barcoding collective, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium, Gilbert T. The genome sequence of the grey wolf, Canis lupus Linnaeus 1758. Wellcome Open Res 2021; 6:310. [PMID: 34926833 PMCID: PMC8649967 DOI: 10.12688/wellcomeopenres.17332.1] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/02/2021] [Indexed: 11/20/2022] Open
Abstract
We present a genome assembly from an individual male Canis lupus orion (the grey wolf, subspecies: Greenland wolf; Chordata; Mammalia; Carnivora; Canidae). The genome sequence is 2,447 megabases in span. The majority of the assembly (98.91%) is scaffolded into 40 chromosomal pseudomolecules, with the X and Y sex chromosomes assembled.
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Kwiatkowski D, Blaxter M, Darwin Tree of Life Barcoding collective, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium. The genome sequence of the bootlace worm, Lineus longissimus (Gunnerus, 1770). Wellcome Open Res 2021; 6:272. [PMID: 34796280 PMCID: PMC8593623 DOI: 10.12688/wellcomeopenres.17193.1] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/02/2021] [Indexed: 11/20/2022] Open
Abstract
We present a genome assembly from an individual Lineus longissimus (the bootlace worm; Nemertea; Pilidiophora; Heteronemertea; Lineidae). The genome sequence is 391 megabases in span. The majority of the assembly is scaffolded into 19 chromosomal pseudomolecules.
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Potter S, Darwin Tree of Life Barcoding collective, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium. The genome sequence of the long-spined sea scorpion, Taurulus bubalis (Euphrasén, 1786). Wellcome Open Res 2021; 6:299. [PMID: 36312458 PMCID: PMC9587380 DOI: 10.12688/wellcomeopenres.17356.1] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/02/2021] [Indexed: 11/20/2022] Open
Abstract
We present a genome assembly from an individual female
Taurulus bubalis (the long-spined sea scorpion; Chordata; Actinopteri; Perciformes; Cottidae). The genome sequence is 615 megabases in span. The complete assembly is scaffolded into 21 chromosomal pseudomolecules.
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Crowley LM, University of Oxford and Wytham Woods Genome Acquisition Lab, Darwin Tree of Life Barcoding collective, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium. The genome sequence of the common green lacewing, Chrysoperla carnea (Stephens, 1836). Wellcome Open Res 2021; 6:334. [PMID: 37089663 PMCID: PMC10116181 DOI: 10.12688/wellcomeopenres.17455.1] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/02/2021] [Indexed: 11/20/2022] Open
Abstract
We present a genome assembly from an individual female Chrysoperla carnea (a common green lacewing; Arthropoda; Insecta; Neuroptera; Chrysopidae). The genome sequence is 560 megabases in span. The majority of the assembly (95.70%) is scaffolded into six chromosomal pseudomolecules, with the X sex chromosome assembled. Gene annotation of this assembly by the NCBI Eukaryotic Genome Annotation Pipeline has identified 12,985 protein coding genes.
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Lohse K, Hayward A, Laetsch DR, Vila R, Lucek K, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium. The genome sequence of the Arran brown,
Erebia ligea (Linnaeus, 1758). Wellcome Open Res 2022; 7:259. [PMID: 37346774 PMCID: PMC10280028 DOI: 10.12688/wellcomeopenres.18115.1] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/23/2022] [Indexed: 08/15/2023] Open
Abstract
We present a genome assembly from an individual male Erebia ligea (Arran brown; Arthropoda; Insecta; Lepidoptera; Nymphalidae). The genome sequence is 506 megabases in span. The majority (99.92%) of the assembly is scaffolded into 29 chromosomal pseudomolecules, with the Z sex chromosome assembled. The complete mitochondrial genome was also assembled and is 15.2 kilobases in length.
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Lohse K, Wright C, Talavera G, García-Berro A, Darwin Tree of Life Barcoding collective, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium. The genome sequence of the painted lady, Vanessa cardui Linnaeus 1758. Wellcome Open Res 2021; 6:324. [PMID: 37008186 PMCID: PMC10061037 DOI: 10.12688/wellcomeopenres.17358.1] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/02/2021] [Indexed: 11/20/2022] Open
Abstract
We present a genome assembly from an individual female Vanessa cardui (the painted lady; Arthropoda; Insecta; Lepidoptera; Nymphalidae). The genome sequence is 425 megabases in span. The majority of the assembly is scaffolded into 32 chromosomal pseudomolecules, with the W and Z sex chromosome assembled. Gene annotation of this assembly on Ensembl has identified 12,821 protein coding genes.
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Fletcher C, Spencer Jones ME, Natural History Museum Genome Acquisition Lab, Darwin Tree of Life Barcoding collective, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium. The genome sequence of the variegated scallop, Mimachlamys varia (Linnaeus, 1758). Wellcome Open Res 2023; 8:307. [PMID: 39021514 PMCID: PMC11252643 DOI: 10.12688/wellcomeopenres.19643.1] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/27/2023] [Indexed: 07/20/2024] Open
Abstract
We present a genome assembly from an individual Mimachlamys varia (the variegated scallop; Mollusca; Bivalvia; Pectinida; Pectinidae). The genome sequence is 975.4 megabases in span. Most of the assembly is scaffolded into 19 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 21.78 kilobases in length.
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Genner M, Collins R, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium. The genome sequence of the Atlantic horse mackerel, Trachurus trachurus (Linnaeus 1758). Wellcome Open Res 2022; 7:118. [PMID: 36874570 PMCID: PMC9975430 DOI: 10.12688/wellcomeopenres.17813.1] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/28/2022] [Indexed: 01/27/2023] Open
Abstract
We present a genome assembly from an individual Trachurus trachurus (the Atlantic horse mackerel; Chordata; Actinopteri; Carangiformes; Carangidae). The genome sequence is 801 megabases in span. The majority of the assembly, 98.68%, is scaffolded into 24 chromosomal pseudomolecules. Gene annotation of this assembly on Ensembl has identified 25,797 protein coding genes.
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Crowley L, Barclay MV, University of Oxford and Wytham Woods Genome Acquisition Lab, Natural History Museum Genome Acquisition Lab, Darwin Tree of Life Barcoding collective, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium. The genome sequence of the bishop’s mitre shieldbug, Aelia acuminata (Linnaeus, 1758). Wellcome Open Res 2021; 6:320. [PMID: 35187268 PMCID: PMC8817068 DOI: 10.12688/wellcomeopenres.17400.1] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/15/2021] [Indexed: 12/02/2022] Open
Abstract
We present a genome assembly from an individual male
Aelia acuminata (the bishop’s mitre shieldbug; Arthropoda; Insecta; Hemiptera; Pentatomidae). The genome sequence is 1,170 megabases in span. The majority of the assembly (99.78%) is scaffolded into 8 chromosomal pseudomolecules, with the X and Y sex chromosome assembled.
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Lohse K, Mackintosh A, Darwin Tree of Life Barcoding collective, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium. The genome sequence of the large white, Pieris brassicae (Linnaeus, 1758). Wellcome Open Res 2021; 6:262. [PMID: 36312456 PMCID: PMC9608253 DOI: 10.12688/wellcomeopenres.17274.1] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/06/2021] [Indexed: 11/20/2022] Open
Abstract
We present a genome assembly from an individual female
Pieris brassicae (the large white; Arthropoda; Insecta; Lepidoptera; Pieridae). The genome sequence is 292 megabases in span. The majority of the assembly is scaffolded into 16 chromosomal pseudomolecules, with the W and Z sex chromosome assembled. Gene annotation of this assembly on Ensembl has identified 12,229 protein coding genes.
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Darbyshire T, Bishop J, Mieszkowska N, Adkins P, Holmes A, Marine Biological Association Genome Acquisition Lab, Darwin Tree of Life Barcoding collective, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium. The genome sequence of the scale worm, Lepidonotus clava (Montagu, 1808). Wellcome Open Res 2022; 7:307. [PMID: 37362008 PMCID: PMC10288160 DOI: 10.12688/wellcomeopenres.18660.1] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/13/2022] [Indexed: 07/06/2024] Open
Abstract
We present a genome assembly from an individual Lepidonotus clava (scale worm; Annelida; Polychaeta; Phyllodocida; Polynoidae). The genome sequence is 1,044 megabases in span. Most of the assembly is scaffolded into 18 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 15.6 kilobases in length.
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Lawniczak MK, Darwin Tree of Life Barcoding collective, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium. The genome sequence of the blue-rayed limpet, Patella pellucida Linnaeus, 1758. Wellcome Open Res 2022; 7:126. [PMID: 36874573 PMCID: PMC9975397 DOI: 10.12688/wellcomeopenres.17825.1] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/31/2022] [Indexed: 11/20/2022] Open
Abstract
We present a genome assembly from an individual Patella pellucida (the blue-rayed limpet; Mollusca; Gastropoda; Patellidae). The genome sequence is 712 megabases in span. The majority of the assembly (99.85%) is scaffolded into 9 chromosomal pseudomolecules. The mitochondrial genome was assembled and is 14.9 kilobases in length.
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Price BW, Winter M, Brooks SJ, Natural History Museum Genome Acquisition Lab, Darwin Tree of Life Barcoding collective, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium. The genome sequence of the blue-tailed damselfly, Ischnura elegans (Vander Linden, 1820). Wellcome Open Res 2022; 7:66. [PMID: 36874565 PMCID: PMC9975421 DOI: 10.12688/wellcomeopenres.17691.1] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/02/2022] [Indexed: 11/20/2022] Open
Abstract
We present a genome assembly from an individual female Ischnura elegans (the blue-tailed damselfly; Arthropoda; Insecta; Odonata; Coenagrionidae). The genome sequence is 1,723 megabases in span. The majority of the assembly (99.55%) is scaffolded into 14 chromosomal pseudomolecules, with the X sex chromosome assembled.
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Lohse K, Weir J, Darwin Tree of Life Barcoding collective, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium. The genome sequence of the meadow brown, Maniola jurtina (Linnaeus, 1758). Wellcome Open Res 2021; 6:296. [PMID: 36866280 PMCID: PMC9971652 DOI: 10.12688/wellcomeopenres.17304.1] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/22/2021] [Indexed: 11/20/2022] Open
Abstract
We present a genome assembly from an individual female Maniola jurtina (the meadow brown; Arthropoda; Insecta; Lepidoptera; Nymphalidae). The genome sequence is 402 megabases in span. The complete assembly is scaffolded into 30 chromosomal pseudomolecules, with the W and Z sex chromosome assembled. Gene annotation of this assembly on Ensembl has identified 12,502 protein coding genes.
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Wood C, Bishop J, Harley J, Mrowicki R, Marine Biological Association Genome Acquisition Lab, Darwin Tree of Life Barcoding collective, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium. The genome sequence of the orange-striped anemone, Diadumene lineata (Verrill, 1869). Wellcome Open Res 2022; 7:93. [PMID: 36874574 PMCID: PMC9975403 DOI: 10.12688/wellcomeopenres.17763.1] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/08/2022] [Indexed: 11/20/2022] Open
Abstract
We present a genome assembly from an individual Diadumene lineata (the orange-striped anemone; Cnidaria; Anthozoa; Actiniaria; Diadumenidae). The genome sequence is 313 megabases in span. The majority of the assembly (96.03%) is scaffolded into 16 chromosomal pseudomolecules. The complete mitochondrial genome was also assembled and is 17.6 kilobases in length.
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Wright R, Woof K, Douglas B, Gaya E, Royal Botanic Gardens Kew Genome Acquisition Lab, Darwin Tree of Life Barcoding collective, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium. The genome sequence of the chicken of the woods fungus, Laetiporus sulphureus (Bull.) Murrill, 1920. Wellcome Open Res 2022; 7:83. [PMID: 37975019 PMCID: PMC10652036 DOI: 10.12688/wellcomeopenres.17750.1] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/28/2022] [Indexed: 11/19/2023] Open
Abstract
We present a genome assembly from an individual Laetiporus sulphureus (the chicken of the woods fungus; Basidiomycota; Agaricomycetes; Polyporales; Laetiporaceae). The genome sequence is 37.4 megabases in span. The complete assembly is scaffolded into 14 chromosomal pseudomolecules.
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Adkins P, Mrowicki R, Harley J, Marine Biological Association Genome Acquisition Lab, Darwin Tree of Life Barcoding collective, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium. The genome sequence of a scale worm, Harmothoe impar (Johnston, 1839). Wellcome Open Res 2023; 8:315. [PMID: 37786780 PMCID: PMC10541532 DOI: 10.12688/wellcomeopenres.19570.1] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/12/2023] [Indexed: 10/04/2023] Open
Abstract
We present a genome assembly from an individual scale worm, Harmothoe impar; Annelida; Polychaeta; Phyllodocida; Polynoidae). The genome sequence is 1,512.3 megabases in span. Most of the assembly is scaffolded into 18 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 15.37 kilobases in length.
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Lohse K, Hayward A, Ebdon S, Darwin Tree of Life Barcoding collective, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium. The genome sequences of the male and female green-veined white, Pieris napi (Linnaeus, 1758). Wellcome Open Res 2021; 6:288. [PMID: 35846179 PMCID: PMC9257262 DOI: 10.12688/wellcomeopenres.17277.1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/06/2021] [Indexed: 11/20/2022] Open
Abstract
We present genome assemblies from a male and female
Pieris napi (the green-veined white; Arthropoda; Insecta; Lepidoptera; Pieridae). The genome sequences of the male and female are 320 and 319 megabases in span, respectively. The majority of the assembly (99.79% of the male assembly, 99.88% of the female) is scaffolded into 24 autosomal pseudomolecules, with the Z sex chromosome assembled for the male and Z and W chromosomes assembled for the female. Gene annotation of the male assembly on Ensembl has identified 13,221 protein coding genes.
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Crowley LM, University of Oxford and Wytham Woods Genome Acquisition Lab, Darwin Tree of Life Barcoding collective, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium. The genome sequence of the German wasp, Vespula germanica (Fabricius, 1793). Wellcome Open Res 2022; 7:60. [PMID: 36128012 PMCID: PMC9471221 DOI: 10.12688/wellcomeopenres.17703.1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/07/2022] [Indexed: 12/03/2022] Open
Abstract
We present a genome assembly from an individual female Vespula germanica (the German wasp; Arthropoda; Insecta; Hymenoptera; Vespidae). The genome sequence is 206 megabases in span. The majority of the assembly (98.55%) is scaffolded into 25 chromosomal pseudomolecules. The mitochondrial genome was also assembled and is 18.0 kilobases in length. Annotation of the genome assembly on Ensembl has identified 12,361 protein-coding genes.
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Boyes D, Crowley LM, Boyes C, University of Oxford and Wytham Woods Genome Acquisition Lab, Darwin Tree of Life Barcoding collective, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium. The genome sequence of the Little Grey, Eudonia lacustrata (Panzer, 1804). Wellcome Open Res 2023; 8:302. [PMID: 39026606 PMCID: PMC11255550 DOI: 10.12688/wellcomeopenres.19646.1] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/30/2023] [Indexed: 07/20/2024] Open
Abstract
We present a genome assembly from an individual male Eudonia lacustrata (the Little Grey; Arthropoda; Insecta; Lepidoptera; Crambidae). The genome sequence is 699.5 megabases in span. Most of the assembly is scaffolded into 30 chromosomal pseudomolecules, including the Z sex chromosome. The mitochondrial genome has also been assembled and is 15.29 kilobases in length. Gene annotation of this assembly on Ensembl identified 21,652 protein coding genes.
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Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, Tree of Life Core Informatics collective, Goate Z, Darwin Tree of Life Consortium. The genome sequence of the two-spot ladybird, Adalia bipunctata (Linnaeus, 1758). Wellcome Open Res 2022; 7:288. [PMID: 37767014 PMCID: PMC10521051 DOI: 10.12688/wellcomeopenres.18610.1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/21/2022] [Indexed: 09/29/2023] Open
Abstract
We present a genome assembly from an individual male Adalia bipunctata (the two-spot ladybird; Arthropoda; Insecta; Coleoptera; Coccinellidae). The genome sequence is 475 megabases in span. Most of the assembly (94.87%) is scaffolded into 11 chromosomal pseudomolecules, with the X and Y sex chromosomes assembled. The complete mitochondrial genome was also assembled and is 21.2 kilobases in length. Gene annotation of this assembly in Ensembl identified 13,611 protein coding genes.
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Boyes D, University of Oxford and Wytham Woods Genome Acquisition Lab, Darwin Tree of Life Barcoding collective, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, Tree of Life Core Informatics collective, Langdon WB, Darwin Tree of Life Consortium. The genome sequence of the Lunar Hornet, Sesia bembeciformis (Hübner 1806). Wellcome Open Res 2023; 8:109. [PMID: 37840882 PMCID: PMC10568212 DOI: 10.12688/wellcomeopenres.19111.1] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/24/2023] [Indexed: 10/17/2023] Open
Abstract
We present a genome assembly from an individual male Sesia bembeciformis (the Lunar Hornet; Arthropoda; Insecta; Lepidoptera; Sesiidae). The genome sequence is 477.1 megabases in span. Most of the assembly is scaffolded into 31 chromosomal pseudomolecules, including the Z sex chromosome. The mitochondrial genome has also been assembled and is 16.1 kilobases in length. Gene annotation of this assembly on Ensembl has identified 15,843 protein coding genes.
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