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Swainston N, Baici A, Bakker BM, Cornish-Bowden A, Fitzpatrick PF, Halling P, Leyh TS, O'Donovan C, Raushel FM, Reschel U, Rohwer JM, Schnell S, Schomburg D, Tipton KF, Tsai MD, Westerhoff HV, Wittig U, Wohlgemuth R, Kettner C. STRENDA DB: enabling the validation and sharing of enzyme kinetics data. FEBS J 2018; 285:2193-2204. [PMID: 29498804 DOI: 10.1111/febs.14427] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2017] [Accepted: 02/27/2018] [Indexed: 01/15/2023]
Abstract
Standards for reporting enzymology data (STRENDA) DB is a validation and storage system for enzyme function data that incorporates the STRENDA Guidelines. It provides authors who are preparing a manuscript with a user-friendly, web-based service that checks automatically enzymology data sets entered in the submission form that they are complete and valid before they are submitted as part of a publication to a journal.
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Affiliation(s)
- Neil Swainston
- Manchester Centre for Synthetic Biology of Fine and Speciality Chemicals, Manchester Institute of Biotechnology, University of Manchester, UK
| | - Antonio Baici
- Department of Biochemistry, University of Zürich, Switzerland
| | - Barbara M Bakker
- University Medical Center Groningen, University of Groningen, The Netherlands
| | | | | | - Peter Halling
- WestCHEM, Department of Pure & Applied Chemistry, University of Strathclyde, Glasgow, UK
| | - Thomas S Leyh
- The Albert-Einstein-College of Medicine, Bronx, NY, USA
| | - Claire O'Donovan
- European Bioinformatics Institute, EMBL Outstation, Cambridge, UK
| | - Frank M Raushel
- Department of Chemistry, Texas A&M University, College Station, TX, USA
| | - Udo Reschel
- Beilstein-Institut, Frankfurt am Main, Germany
| | - Johann M Rohwer
- Department of Biochemistry, University of Stellenbosch, South Africa
| | - Santiago Schnell
- Department of Molecular & Integrative Physiology, Department of Computational Medicine & Bioinformatics, University of Michigan Medical School, Ann Arbor, MI, USA
| | - Dietmar Schomburg
- Bioinformatics and Systems Biology, Technical University of Braunschweig, Germany
| | - Keith F Tipton
- School of Biochemistry and Immunology, Trinity College Dublin, Dublin, Ireland
| | - Ming-Daw Tsai
- Institute of Biochemical Sciences, Academia Sinica, Taipei, Taiwan
| | - Hans V Westerhoff
- Manchester Centre for Integrative Systems Biology, School for Chemical Engineering and Analytical Science, University of Manchester, UK.,Synthetic Systems Biology and Nuclear Organization, Swammerdam Institute for Life Science, University of Amsterdam, The Netherlands.,Molecular Cell Biology, Faculty of Sciences, Vrije Universiteit Amsterdam, The Netherlands
| | - Ulrike Wittig
- Heidelberg Institute for Theoretical Studies (HITS gGmbH), Germany
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