Characterization of trace and heavy metal concentration in groundwater: A case study from a tropical river basin of southern India

This study investigates the hydrogeochemistry of groundwater samples collected from the Shiriya River Basin (SRB), a tropical watershed located in Kasaragod, Kerala, southern India, with a special focus on trace elements. Fifty-four groundwater samples were collected from deep aquifers, which constitute weathered and fractured granitoids and mafic rocks, and the groundwater is tapped by bore wells from a fractured zone at a depth range of 60-100 m. Concentrations of Sr, Li, Ba, Al, V, Cr, Mn, Fe, Co, Ni, Cu, Zn, As, Se, Cd, Ag, Au, Te, Pb, Re, and PGEs in groundwater were determined by using Q-ICPMS. Out of the 25 analysed trace elements in groundwater, only Sr (489.6 μg/L), Ba (226 μg/L), Li (11.76 μg/L) Mn (396.8 μg/L), Ni (68 μg/L) and Fe (2438.5 μg/L) show anomalous values. The PGEs and the majority of trace elements show values within the permissible limit. Raman spectral studies reveal the presence of celsian in aquifer rocks and are the source of Ba in groundwater. Further, XRF data of the rocks show a high enrichment of Fe and Mn in mafic dyke, basalt, and syenite, and Ba and Sr in granite, pegmatite, and granitic gneiss. Therefore, this study proved that the source of these elements is geogenic, i.e., they are released from the crystalline aquifer through rock-water interaction under alkaline conditions. The results of this study show that the groundwater of the basin has enough metals such as Na, K, Mg, Ca, Mn, Fe, Co, Cu, and Zn, which are good for health. Nevertheless, a few metals (Fe, Mn, Ba, Sr, Li, Ni) that may exert toxic effects on humans are also present in the groundwater of the SRB. As groundwater is found to be a dependable source of drinking water in such watersheds, a comprehensive study on the hydrogeochemistry of all watersheds in tropical regions is recommended.

Enhanced HbF reactivation by multiplex mutagenesis of thalassemic CD34+ cells in vitro and in vivo

Thalassemia or sickle cell patients with hereditary persistence of fetal hemoglobin (HbF) have an ameliorated clinical phenotype and, in some cases, can achieve transfusion independence. Inactivation via genome editing of γ-globin developmental suppressors, such as BCL11A or LRF/ZBTB7A, or of their binding sites, have been shown to significantly increase expression of endogenous HbF. To broaden the therapeutic window beyond a single-editing approach, we have explored combinations of cis- and trans-editing targets to enhance HbF reactivation. Multiplex mutagenesis in adult CD34+ cells was well tolerated and did not lead to any detectable defect in the cells' proliferation and differentiation, either in vitro or in vivo. The combination of 1 trans and 1 cis mutation resulted in high editing retention in vivo, coupled with almost pancellular HbF expression in NBSGW mice. The greater in vivo performance of this combination was also recapitulated using a novel helper-dependent adenoviral-CRISPR vector (HD-Ad-dualCRISPR) in CD34+ cells from β-thalassemia patients transplanted to NBSGW mice. A pronounced increase in HbF expression was observed in human red blood cells in mice with established predominant β0/β0-thalassemic hemopoiesis after in vivo injection of the HD-Ad-dualCRISPR vector. Collectively, our data suggest that the combination of cis and trans fetal globin reactivation mutations has the potential to significantly increase HbF both totally and on a per cell basis over single editing and could thus provide significant clinical benefit to patients with severe β-globin phenotype.

Highly Parallel Quantification and Compartment Localization of Transcription Factors and Nuclear Proteins

Transcription factors and other chromatin-associated proteins are difficult to quantify comprehensively. Here, we combine facile nuclear sub-fractionation with data-independent acquisition mass spectrometry to achieve rapid, sensitive, and highly parallel quantification of the nuclear proteome in human cells. We apply this approach to quantify the response to acute degradation of BET bromodomains, revealing unexpected chromatin regulatory dynamics. The method is simple and enables system-level study of previously inaccessible chromatin and genome regulators.

Abstract PO-048: Visual nucleotyping identifies chromatin phenotypes triggered by genome editing

Optical microscopy has the potential to provide rapid phenotypic readout of cellular states. Here we show that automated optical phenotyping of nuclei is capable of rapidly and reliably discriminating the effects of targeted mutations to chromatin remodelers, which are major players in oncogenesis and targets for therapeutic intervention. Smarca4 is a chromatin remodeler frequently mutated in cancer. We investigated whether nuclear morphometry and concomitant supervised machine learning approaches on standard optical microscopy images of nuclear-DNA stained cells could reliably discern Smarca4-/- lung cancer cells from isogenic Smarca4+/+ clones that were derived by precision genome editing. We used TALEN-based editing on A549 lung cancer cells to generate isogenic Smarca4+/+ clones, performed conventional 2D 40x optical imaging of DAPI-stained cell nuclei from parental (Smarca4-/-) and edited (Smarca4+/+) cells, quantified a set of numerical parameters (features) that reflected various intuitive attributes of nuclear morphology and chromatin texture of the cell nuclei, and finally tested the efficacy of supervised machine learning algorithms containing these features to distinguish between the two cell categories. We found that the parental and edited A549 cells exhibited similar nuclear size and shape attributes but showed measurable differences in subtle chromatin texture. Additionally, classifiers based on these chromatin texture features were able to accurately distinguish the smarca4-rescued cells from the smarca4-mutant cells. Our results thus demonstrate the promise of quantitative chromatin phenotyping for genome editing applications in oncology.

Citation Format: Vivek Nandakumar, Sandra Stehling-Sun, William Kerwin, Alister Funnell, John Stamatoyannopoulos. Visual nucleotyping identifies chromatin phenotypes triggered by genome editing [abstract]. In: Proceedings of the AACR Virtual Special Conference on Artificial Intelligence, Diagnosis, and Imaging; 2021 Jan 13-14. Philadelphia (PA): AACR; Clin Cancer Res 2021;27(5_Suppl):Abstract nr PO-048.

Drosophila Wash and the Wash regulatory complex function in nuclear envelope budding

Nuclear envelope (NE) budding is a recently described phenomenon wherein large macromolecular complexes are packaged inside the nucleus and extruded through the nuclear membranes. Although a general outline of the cellular events occurring during NE budding is now in place, little is yet known about the molecular machinery and mechanisms underlying the physical aspects of NE bud formation. Using a multidisciplinary approach, we identify Wash, its regulatory complex (SHRC), capping protein and Arp2/3 as new molecular components involved in the physical aspects of NE bud formation in a Drosophila model system. Interestingly, Wash affects NE budding in two ways: indirectly through general nuclear lamina disruption via an SHRC-independent interaction with Lamin B leading to inefficient NE bud formation, and directly by blocking NE bud formation along with its SHRC, capping protein and Arp2/3. In addition to NE budding emerging as an important cellular process, it shares many similarities with herpesvirus nuclear egress mechanisms, suggesting new avenues for exploration in both normal and disease biology.

Global Regulatory DNA Potentiation by SMARCA4 Propagates to Selective Gene Expression Programs via Domain-Level Remodeling

The human genome encodes millions of regulatory elements, of which only a small fraction are active within a given cell type. Little is known about the global impact of chromatin remodelers on regulatory DNA landscapes and how this translates to gene expression. We use precision genome engineering to reawaken homozygously inactivated SMARCA4, a central ATPase of the human SWI/SNF chromatin remodeling complex, in lung adenocarcinoma cells. Here, we combine DNase I hypersensitivity, histone modification, and transcriptional profiling to show that SMARCA4 dramatically increases both the number and magnitude of accessible chromatin sites genome-wide, chiefly by unmasking sites of low regulatory factor occupancy. By contrast, transcriptional changes are concentrated within well-demarcated remodeling domains wherein expression of specific genes is gated by both distal element activation and promoter chromatin configuration. Our results provide a perspective on how global chromatin remodeling activity is translated to gene expression via regulatory DNA.

Linezolid and Rasagiline - A culprit for serotonin syndrome

A 65-year-old female patient was admitted to the hospital for cellulitis. She had a history of diabetes mellitus and parkinsonism on levodopa/carbidopa, rasagiline, ropinirole, trihexyphenidyl, amantadine, metformin, and glipizide. We present here a case of rare incidence of serotonin syndrome associated with linezolid and rasagiline.

Prelamin A processing, accumulation and distribution in normal cells and laminopathy disorders

Lamin A is part of a complex structural meshwork located beneath the nuclear envelope and is involved in both structural support and the regulation of gene expression. Lamin A is initially expressed as prelamin A, which contains an extended carboxyl terminus that undergoes a series of post-translational modifications and subsequent cleavage by the endopeptidase ZMPSTE24 to generate lamin A. To facilitate investigations of the role of this cleavage in normal and disease states, we developed a monoclonal antibody (PL-1C7) that specifically recognizes prelamin A at the intact ZMPSTE24 cleavage site, ensuring prelamin A detection exclusively. Importantly, PL-1C7 can be used to determine prelamin A localization and accumulation in cells where lamin A is highly expressed without the use of exogenous fusion proteins. Our results show that unlike mature lamin A, prelamin A accumulates as discrete and localized foci at the nuclear periphery. Furthermore, whereas treatment with farnesylation inhibitors of cells overexpressing a GFP-prelamin A fusion protein results in the formation of large nucleoplasmic clumps, these aggregates are not observed upon similar treatment of cells expressing endogenous prelamin A or in cells lacking ZMPSTE24 expression and/or activity. Finally, we show that specific laminopathy-associated mutations exhibit both positive and negative effects on prelamin A accumulation, indicating that these mutations affect prelamin A processing efficiency in different manners.

Abstract 4297: Quantifying three-dimensional cellular morphology and its heterogeneity in epithelial cancers by single-cell optical tomography

The three-dimensional (3D) structure of the cell and its nucleus is intricately associated with cellular function. Aberrations and heterogeneity in cellular and nuclear morphology serve as diagnostically important cues to identify malignant transformation. However, current cytopathology practice is predominantly based on a qualitative, 2D assessment of cellular morphology that may bias the diagnosis. We utilized the Cell-CT® platform to perform single-cell, optical tomography imaging and generate 3D cell images with isotropic, sub-micron spatial resolution. We developed custom image analysis tools to accurately quantify 3D cell and nuclear morphology. We used these measures to characterize the morphological heterogeneity within and among epithelial cell populations, and to identify morphological descriptors that are reliably predictive of cell state. We assessed the efficacy of our approach relative to conventional 2D assessment (at 40x magnification) to detect malignant transformation in immortalized and primary normal-cancer cell line pairs from human esophagus and breast epithelia. We observed the 3D method of assessment to provide a consistently superior performance (sensitivity and specificity) in predicting malignant transformation. Further, some widely used diagnostic parameters, such as nuclear size or nucleus-to-cytoplasm ratio, did not always exhibit the highest predictive power in 3D space. The availability of 3D morphological information also provided novel insights on intra-population morphological heterogeneity in both normal and cancer cell populations. Our results emphasize the need to incorporate 3D morphological information into standard pathological practice.

Citation Format: Vivek Nandakumar, Stephanie Helland, Jessica H. Han, Geriann Davis, Brian A. Ashcroft, Thai H. Tran, Ting Li, Karen S. Anderson, Rahul Pannala, Joseph R. Mikhael, David E. Fleischer, Roger H. Johnson, Kimberly J. Bussey, Deirdre R. Meldrum. Quantifying three-dimensional cellular morphology and its heterogeneity in epithelial cancers by single-cell optical tomography. [abstract]. In: Proceedings of the 105th Annual Meeting of the American Association for Cancer Research; 2014 Apr 5-9; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2014;74(19 Suppl):Abstract nr 4297. doi:10.1158/1538-7445.AM2014-4297

Nano-hydroxyapatite reinforced AZ31 magnesium alloy by friction stir processing: a solid state processing for biodegradable metal matrix composites

Friction stir processing (FSP) was successfully adopted to fabricate nano-hydroxyapatite (nHA) reinforced AZ31 magnesium alloy composite as well as to achieve fine grain structure. The combined effect of grain refinement and the presence of embedded nHA particles on enhancing the biomineralization and controlling the degradation of magnesium were studied. Grain refinement from 56 to ~4 and 2 μm was observed at the stir zones of FSP AZ31 and AZ31-nHA composite respectively. The immersion studies in super saturated simulated body fluid (SBF 5×) for 24 h suggest that the increased wettability due to fine grain structure and nHA particles present in the AZ31-nHA composite initiated heterogeneous nucleation which favored the early nucleation and growth of calcium-phosphate mineral phase. The nHA particles as nucleation sites initiated rapid biomineralization in the composite. After 72 h of immersion the degradation due to localized pitting was observed to be reduced by enhanced biomineralization in both the FSPed AZ31 and the composite. Also, best corrosion behavior was observed for the composite before and after immersion test. MTT assay using rat skeletal muscle (L6) cells showed negligible toxicity for all the processed and unprocessed samples. However, cell adhesion was observed to be more on the composite due to the small grain size and incorporated nHA.

Friction stir processing of magnesium-nanohydroxyapatite composites with controlled in vitro degradation behavior

Nano-hydroxyapatite (nHA) reinforced magnesium composite (Mg-nHA) was fabricated by friction stir processing (FSP). The effect of smaller grain size and the presence of nHA particles on controlling the degradation of magnesium were investigated. Grain refinement from 1500μm to ≈3.5μm was observed after FSP. In vitro bioactivity studies by immersing the samples in supersaturated simulated body fluid (SBF 5×) indicate that the increased hydrophilicity and pronounced biomineralization are due to grain refinement and the presence of nHA in the composite respectively. Electrochemical test to assess the corrosion behavior also clearly showed the improved corrosion resistance due to grain refinement and enhanced biomineralization. Using MTT colorimetric assay, cytotoxicity study of the samples with rat skeletal muscle (L6) cells indicate marginal increase in cell viability of the FSP-Mg-nHA sample. The composite also showed good cell adhesion.

Abstract 4057: Quantitative assessment of 3D nuclear architecture in colon epithelial cells by micro-optical computed tomography

Colorectal cancer (CRC) is a commonly diagnosed cancer and the third leading cause of cancer-related deaths in the United States. About 50,000 people will die from this disease in 2011. CRCs develop through an accumulation of genetic and epigenetic aberrations and have been broadly classified into three molecular subtypes - chromosomal instability (CIN), microsatellite instability (MSI), and CpG Island Methylator Phenotype (CIMP). Research studies on CRC have predominantly focused on its molecular biological and genetic basis, but very little is known about the three-dimensional cell morphological variations between these subclasses. We investigated alterations in the three-dimensional (3D) nuclear architecture of the three molecular subtypes of CRC, comparing them to a benign adenoma, using representative epithelial cell line models: AAC1 (benign), AAC1-SB10 (CIN), HCT-116 (MSI) and RKO (CIMP). We applied micro-optical computed tomography (Cell-CT) to image one hundred individual hematoxylin-stained cells of each of the four types with submicron, isotropic spatial resolution. We performed automated 3D image analysis on the volumetric cell images, quantifying fifty descriptors (features) to characterize the nuclear morphology and coarse chromatin organization. We evaluated the statistical efficacy of our 3D features in distinguishing among the cell types. Our results demonstrated previously unreported morphological variations among the controls and three types of CRC. Relative to the benign adenoma cells, in contrast to CIN and MSI, the CIMP subtype exhibited markedly smaller cell and nuclear sizes, smaller nucleus-to-cytoplasm (NC) ratio and a predominantly smooth nuclear interior, lacking in clumpy chromatin. However, the CIMP cell nuclei exhibited the highest optical density among the four cell classes. MSI cells showed the clumpiest nuclear texture, followed by the benign adenoma cell nuclei. These results offer new perspectives on nuclear structure variations in benign colon adenoma and colorectal cancer cells, warranting further investigation. They suggest that the hypermethylation seen in the CIMP phenotype may result in demonstrable chromatin compaction with a concomitant reduction in nuclear size. The chromatin clumpiness observed in the MSI cells may reflect increased mutations at nuclear scaffold binding sites, which tend to be characterized by single and di-nucleotide repeats. We intend to pursue studies on human biopsy cells with ultimate goal of testing the efficacy of Cell-CT for CRC diagnosis, subtyping and staging.

Citation Format: {Authors}. {Abstract title} [abstract]. In: Proceedings of the 103rd Annual Meeting of the American Association for Cancer Research; 2012 Mar 31-Apr 4; Chicago, IL. Philadelphia (PA): AACR; Cancer Res 2012;72(8 Suppl):Abstract nr 4057. doi:1538-7445.AM2012-4057

Abstract 5668: Vorinostat exposure results in differential sensitivity and nuclear structure normalization in an in vitro model of esophageal adenocarcinoma progression

Esophageal adenocarcinoma (EA) has a poor prognosis with a five-year survival rate of less than 20%. Barrett's esophagus (BE), often consequent to chronic acid reflux, contributes to a 15-fold increased risk for EA. BE is a multi-stage condition that may progress through metaplasia and increasingly severe dysplasia to EA. The progression from normal squamous epithelium through BE to EA is characterized by genetic and nuclear structure aberrations. Histone deacetylase (HDAC) inhibitors are becoming increasingly popular as anticancer therapeutics. Vorinostat (Zolinza) is a pan-HDAC inhibitor currently approved to treat cutaneous T-cell lymphoma. It is under investigation in at least 81 actively recruiting clinical trials for various other cancer types including gastrointestinal cancers. We investigated the effects of vorinostat treatment on cell lines representative of normal squamous (EPC2), metaplasia (CPA) and adenocarcinoma (Flo1) of the esophageal epithelium. We assessed variations in viability and three-dimensional (3D) nuclear morphology upon drug treatment, comparing the results against vehicle (DMSO) control and untreated cells of all three types. A 12-point, three-fold, serial dilution drug-dose-response (DDR) experiment performed at 24, 48 and 72 hour time points indicated a differential response among the cell types. Flo1 cancer cells were most sensitive to the drug, with an IC50 value at 48 hours of 0.7928 micromolar, versus 7.536 micromolar for CPA and 21.49 micromolar for EPC2. After 24 hours of vorinostat exposure, assessment of apoptotic activity with the Caspase 3/7 Glo assay revealed increased apoptosis in Flo1 but not the other cells. To understand the morphological correlates of vorinostat treatment, we used micro-optical computed tomography to acquire 3D images of 200 individual, hematoxylin-stained, untreated and treated (48 hours at the Flo1 IC50 dose) cells of each cell type with sub-micron, isotropic spatial resolution. We applied computer vision techniques to quantify 3D nuclear morphology and coarse chromatin organization. Treatment with vorinostat normalized the nuclear structure of cancer and metaplastic cells, reverting them to a more nearly-normal phenotype: Flo1 cells showed reduced cell and nuclear volumes and decreased chromatin clumpiness after vorinostat treatment. The same morphological trends were present but less pronounced in CPA cells. EPC2 cells showed minimal changes in response to treatment. These results support further exploration of vorinostat for the treatment of patients with BE and EA. Our data indicate that vorinostat sensitivity increases, with a corresponding increase in apoptosis, as cells progress from normal to esophageal adenocarcinoma. This increased sensitivity to the drug is accompanied by a normalization of nuclear architecture in surviving abnormal cells.

Citation Format: {Authors}. {Abstract title} [abstract]. In: Proceedings of the 103rd Annual Meeting of the American Association for Cancer Research; 2012 Mar 31-Apr 4; Chicago, IL. Philadelphia (PA): AACR; Cancer Res 2012;72(8 Suppl):Abstract nr 5668. doi:1538-7445.AM2012-5668

Isotropic 3D nuclear morphometry of normal, fibrocystic and malignant breast epithelial cells reveals new structural alterations

Background

Grading schemes for breast cancer diagnosis are predominantly based on pathologists' qualitative assessment of altered nuclear structure from 2D brightfield microscopy images. However, cells are three-dimensional (3D) objects with features that are inherently 3D and thus poorly characterized in 2D. Our goal is to quantitatively characterize nuclear structure in 3D, assess its variation with malignancy, and investigate whether such variation correlates with standard nuclear grading criteria.

Methodology

We applied micro-optical computed tomographic imaging and automated 3D nuclear morphometry to quantify and compare morphological variations between human cell lines derived from normal, benign fibrocystic or malignant breast epithelium. To reproduce the appearance and contrast in clinical cytopathology images, we stained cells with hematoxylin and eosin and obtained 3D images of 150 individual stained cells of each cell type at sub-micron, isotropic resolution. Applying volumetric image analyses, we computed 42 3D morphological and textural descriptors of cellular and nuclear structure.

Principal Findings

We observed four distinct nuclear shape categories, the predominant being a mushroom cap shape. Cell and nuclear volumes increased from normal to fibrocystic to metastatic type, but there was little difference in the volume ratio of nucleus to cytoplasm (N/C ratio) between the lines. Abnormal cell nuclei had more nucleoli, markedly higher density and clumpier chromatin organization compared to normal. Nuclei of non-tumorigenic, fibrocystic cells exhibited larger textural variations than metastatic cell nuclei. At p<0.0025 by ANOVA and Kruskal-Wallis tests, 90% of our computed descriptors statistically differentiated control from abnormal cell populations, but only 69% of these features statistically differentiated the fibrocystic from the metastatic cell populations.

Conclusions

Our results provide a new perspective on nuclear structure variations associated with malignancy and point to the value of automated quantitative 3D nuclear morphometry as an objective tool to enable development of sensitive and specific nuclear grade classification in breast cancer diagnosis.

Quantitative characterization of preneoplastic progression using single-cell computed tomography and three-dimensional karyometry

The development of morphological biosignatures to precisely characterize preneoplastic progression necessitates high-resolution three-dimensional (3D) cell imagery and robust image processing algorithms. We report on the quantitative characterization of nuclear structure alterations associated with preneoplastic progression in human esophageal epithelial cells using single-cell optical tomography and fully automated 3D karyometry. We stained cultured cells with hematoxylin and generated 3D images of individual cells by mathematically reconstructing 500 projection images acquired using optical absorption tomographic imaging. For 3D karyometry, we developed novel, fully automated algorithms to robustly segment the cellular, nuclear, and subnuclear components in the acquired cell images, and computed 41 quantitative morphological descriptors from these segmented volumes. In addition, we developed algorithms to quantify the spatial distribution and texture of the nuclear DNA. We applied our methods to normal, metaplastic, and dysplastic human esophageal epithelial cell lines, analyzing 100 cells per line. The 3D karyometric descriptors elucidated quantitative differences in morphology and enabled robust discrimination between cell lines on the basis of extracted morphological features. The morphometric hallmarks of cancer progression such as increased nuclear size, elevated nuclear content, and anomalous chromatin texture and distribution correlated with this preneoplastic progression model, pointing to the clinical use of our method for early cancer detection.

AFM stiffness nanotomography of normal, metaplastic and dysplastic human esophageal cells

The mechanical stiffness of individual cells is important in tissue homeostasis, cell growth, division and motility, and the epithelial-mesenchymal transition in the initiation of cancer. In this work, a normal squamous cell line (EPC2) and metaplastic (CP-A) as well as dysplastic (CP-D) Barrett's Esophagus columnar cell lines are studied as a model of pre-neoplastic progression in the human esophagus. We used the combination of an atomic force microscope (AFM) with a scanning confocal fluorescence lifetime imaging microscope to study the mechanical properties of single adherent cells. Sixty four force indentation curves were taken over the nucleus of each cell in an 8 x 8 grid pattern. Analyzing the force indentation curves, indentation depth-dependent Young's moduli were found for all cell lines. Stiffness tomograms demonstrate distinct differences between the mechanical properties of the studied cell lines. Comparing the stiffness for indentation forces of 1 nN, most probable Young's moduli were calculated to 4.7 kPa for EPC2 (n = 18 cells), 3.1 kPa for CP-A (n = 10) and 2.6 kPa for CP-D (n = 19). We also tested the influence of nuclei and nucleoli staining organic dyes on the mechanical properties of the cells. For stained EPC2 cells (n = 5), significant stiffening was found (9.9 kPa), while CP-A cells (n = 5) showed no clear trend (2.9 kPa) and a slight softening was observed (2.1 kPa) in the case of CP-D cells (n = 16). Some force-indentation curves show non-monotonic discontinuities with segments of negative slope, resembling a sawtooth pattern. We found the incidence of these 'breakthrough events' to be highest in the dysplastic CP-D cells, intermediate in the metaplastic CP-A cells and lowest in the normal EPC2 cells. This observation suggests that the microscopic explanation for the increased compliance of cancerous and pre-cancerous cells may lie in their susceptibility to 'crumble and yield' rather than their ability to 'bend and flex'.

A series of naphthalimide derivatives as intra and extracellular pH sensors

A series of new naphthalimide derivatives were synthesized and studied. Three of the materials (SM1, SM2, and SM3) possess methacrylate(s) moieties as pH sensor monomers, enabling these compounds to be polymerized with other monomers for thin film preparation for extracellular pH sensing. Herein, poly(2-hydroxyethyl methacrylate)-co-poly(acrylamide) (PHEMA-co-PAM) was chosen as the polymer matrix. Structure influences on pH responses and pK(a) values were studied. The film P3 composed of the sensing moiety SM3 has a pK(a) close to the usual biological environmental pH of approximately 7. It was used as an extracellular pH sensor to monitor pH change during the metabolism of prokaryotic Escherichia coli (E. coil). On the other hand, the three sensor monomers are new intracellular biomarkers to sense lysosomes of eukaryotic cells since (1) their pK(a) values are in a range of 5.9-6.8; (2) their emission intensities at acidic conditions (such as at pH 5) are much stronger than those at a neutral condition of pH 7; (3) lysosomes range in size from 0.1 to 1.2 mum in diameter with pH ranging from 4.5 to 5.0, which is much more acidic than the pH value of the cytoplasm (usually with a pH value of approximately 7.2); and (4) the acidity of lysosomes enables a protonation of the amino groups of the pH probes making the sensors emit brightly in acidic organelles by inhibiting the photo-induced electron transfer from the amino groups to the fluorophores. Lysosome sensing was demonstrated using live human brain glioblastoma U87MG cell line, human cervical cancer HeLa cell line, and human esophagus premalignant CP-A and CP-D cell lines by observations of small acidic spherical organelles (lysosomes) and significant colocalizations (82-95%) of the sensors with a commercially available lysosome-selective staining probe LysoTracker Red under confocal fluorescence microscopy.

Direct measurement of oxygen consumption rates from attached and unattached cells in a reversibly sealed, diffusionally isolated sample chamber

Oxygen consumption is a fundamental component of metabolic networks, mitochondrial function, and global carbon cycling. To date there is no method available that allows for replicate measurements on attached and unattached biological samples without compensation for extraneous oxygen leaking into the system. Here we present the Respiratory Detection System, which is compatible with virtually any biological sample. The RDS can be used to measure oxygen uptake in microliter-scale volumes with a reversibly sealed sample chamber, which contains a porphyrin-based oxygen sensor. With the RDS, one can maintain a diffusional seal for up to three hours, allowing for the direct measurement of respiratory function of samples with fast or slow metabolic rates. The ability to easily measure oxygen uptake in small volumes with small populations or dilute samples has implications in cell biology, environmental biology, and clinical diagnostics.

Surgical treatment of congenital coronary artery fistula

Six patients with congenital coronary artery fistula underwent successful corrective surgery. Precise diagnosis was established either by retrograde aortography or more recently by selective arteriography. The left coronary artery was involved in four and the right in two cases. The fistula communicated with the right ventricle in three and the right atrium in three subjects. The operative approach is dictated by the site of entry of the vessel into the cardiac chamber. The use of cardiopulmonary bypass for intracardiac repair allows accurate closure of the fistula thereby reducing the chances of recurrence. A follow-up of one to seven years showed that all patients are asymptomatic and leading normal lives.