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Calmodulin Binds a Highly Extended HIV-1 MA Protein That Refolds Upon Its Release. Biophys J 2023; 122:1734. [PMID: 37031681 PMCID: PMC10183364 DOI: 10.1016/j.bpj.2023.04.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/11/2023] Open
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2
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Palit et al. Reply. PHYSICAL REVIEW LETTERS 2019; 123:239802. [PMID: 31868439 DOI: 10.1103/physrevlett.123.239802] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2018] [Indexed: 06/10/2023]
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3
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Abstract
Highly oriented pyrolytic graphite (HOPG) has been used as monochromators, analyzers and filters at neutron and X-ray scattering facilities for more than half a century. Interesting questions remain. In this work, the first observation of anomalous neutron `halo' scattering of HOPG is reported. The scattering projects a ring onto the detector with a half-cone angle of 12.4°, which surprisingly persists to incident neutron wavelengths far beyond the Bragg cutoff for graphite (6.71 Å). At longer wavelengths the ring is clearly a doublet with a splitting roughly proportional to wavelength. Sample tilting leads to the shift of the ring, which is wavelength dependent with longer wavelengths providing a smaller difference between the ring shift and the sample tilting. The ring broadens and weakens with decreasing HOPG quality. The lattice dynamics of graphite play a role in causing the scattering ring, as shown by the fact that the ring vanishes once the sample is cooled to 30 K. A possible interpretation by multiple scattering including elastic and inelastic processes is proposed.
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QUOKKA, the pinhole small-angle neutron scattering instrument at the OPAL Research Reactor, Australia: design, performance, operation and scientific highlights. J Appl Crystallogr 2018. [DOI: 10.1107/s1600576718002534] [Citation(s) in RCA: 111] [Impact Index Per Article: 18.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Abstract
QUOKKA is a 40 m pinhole small-angle neutron scattering instrument in routine user operation at the OPAL research reactor at the Australian Nuclear Science and Technology Organisation. Operating with a neutron velocity selector enabling variable wavelength, QUOKKA has an adjustable collimation system providing source–sample distances of up to 20 m. Following the large-area sample position, a two-dimensional 1 m2position-sensitive detector measures neutrons scattered from the sample over a secondary flight path of up to 20 m. Also offering incident beam polarization and analysis capability as well as lens focusing optics, QUOKKA has been designed as a general purpose SANS instrument to conduct research across a broad range of scientific disciplines, from structural biology to magnetism. As it has recently generated its first 100 publications through serving the needs of the domestic and international user communities, it is timely to detail a description of its as-built design, performance and operation as well as its scientific highlights. Scientific examples presented here reflect the Australian context, as do the industrial applications, many combined with innovative and unique sample environments.
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The effect of crowder charge in a model polymer–colloid system for macromolecular crowding: Polymer structure and dynamics. J Chem Phys 2017; 147:114902. [DOI: 10.1063/1.4986353] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Combining Diffusion NMR and Small-Angle Neutron Scattering Enables Precise Measurements of Polymer Chain Compression in a Crowded Environment. PHYSICAL REVIEW LETTERS 2017; 118:097801. [PMID: 28306301 DOI: 10.1103/physrevlett.118.097801] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2016] [Indexed: 06/06/2023]
Abstract
The effect of particles on the behavior of polymers in solution is important in a number of important phenomena such as the effect of "crowding" proteins in cells, colloid-polymer mixtures, and nanoparticle "fillers" in polymer solutions and melts. In this Letter, we study the effect of spherical inert nanoparticles (which we refer to as "crowders") on the diffusion coefficient and radius of gyration of polymers in solution using pulsed-field-gradient NMR and small-angle neutron scattering (SANS), respectively. The diffusion coefficients exhibit a plateau below a characteristic polymer concentration, which we identify as the overlap threshold concentration c^{⋆}. Above c^{⋆}, in a crossover region between the dilute and semidilute regimes, the (long-time) self-diffusion coefficients are found, universally, to decrease exponentially with polymer concentration at all crowder packing fractions, consistent with a structural basis for the long-time dynamics. The radius of gyration obtained from SANS in the crossover regime changes linearly with an increase in polymer concentration, and must be extrapolated to c^{⋆} in order to obtain the radius of gyration of an individual polymer chain. When the polymer radius of gyration and crowder size are comparable, the polymer size is very weakly affected by the presence of crowders, consistent with recent computer simulations. There is significant chain compression, however, when the crowder size is much smaller than the polymer radius gyration.
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Porosity of silica Stöber particles determined by spin-echo small angle neutron scattering. SOFT MATTER 2016; 12:4709-14. [PMID: 27021920 DOI: 10.1039/c5sm02772a] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Stöber silica particles are used in a diverse range of applications. Despite their widespread industrial and scientific uses, information on the internal structure of the particles is non-trivial to obtain and is not often reported. In this work we have used spin-echo small angle neutron scattering (SESANS) in conjunction with ultra small angle X-ray scattering (USAXS) and pycnometry to study an aqueous dispersion of Stöber particles. Our results are in agreement with models which propose that Stöber particles have a porous core, with a significant fraction of the pores inaccessible to solvent. For samples prepared from the same master sample in a range of H2O : D2O ratio solutions we were able to model the SESANS results for the solution series assuming monodisperse, smooth surfaced spheres of radius 83 nm with an internal open pore volume fraction of 32% and a closed pore fraction of 10%. Our results are consistent with USAXS measurements. The protocol developed and discussed here shows that the SESANS technique is a powerful way to investigate particles much larger than those studied using conventional small angle scattering methods.
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Compact spherical neutron polarimeter using high-T(c) YBCO films. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2016; 87:033901. [PMID: 27036785 DOI: 10.1063/1.4943254] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/12/2015] [Accepted: 02/20/2016] [Indexed: 06/05/2023]
Abstract
We describe a simple, compact device for spherical neutron polarimetry measurements at small neutron scattering angles. The device consists of a sample chamber with very low (<0.01 G) magnetic field flanked by regions within which the neutron polarization can be manipulated in a controlled manner. This allows any selected initial and final polarization direction of the neutrons to be obtained. We have constructed a prototype device using high-T(c) superconducting films and mu-metal to isolate regions with different magnetic fields and tested device performance in transmission geometry. Finite-element methods were used to simulate the device's field profile and these have been verified by experiment using a small solenoid as a test sample. Measurements are reported using both monochromatic and polychromatic neutron sources. The results show that the device is capable of extracting sample information and distinguishing small angular variations of the sample magnetic field. As a more realistic test, we present results on the characterization of a 10 μm thick Permalloy film in zero magnetic field, as well as its response to an external magnetic field.
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Spin echo modulated small-angle neutron scattering using superconducting magnetic Wollaston prisms. J Appl Crystallogr 2016. [DOI: 10.1107/s1600576715021573] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
The spin echo modulated small-angle neutron scattering technique has been implemented using two superconducting magnetic Wollaston prisms at a reactor neutron source. The density autocorrelation function measured for a test sample of colloidal silica in a suspension agrees with that obtained previously by other neutron scattering methods on an identically prepared sample. The reported apparatus has a number of advantages over competing technologies: it should allow larger length scales (up to several micrometres) to be probed; it has very small parasitic neutron scattering and attenuation; the magnetic fields within the device are highly uniform; and the neutron spin transport across the device boundaries is very efficient. To understand quantitatively the results of the reported experiment and to guide future instrument development, Monte Carlo simulations are presented, in which the evolution of the neutron polarization through the apparatus is based on magnetic field integrals obtained from finite-element simulations of the various magnetic components. The Monte Carlo simulations indicate that the polarization losses observed in the experiments are a result of instrumental artifacts that can be easily corrected in future experiments.
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Abstract
Soft colloids are hybrids between linear polymers and hard colloids. Their solutions exhibit rich phase phenomenon due to their unique microstructure. In scaling theories, a geometrically defined overlap concentration c* is used to identify the concentration regimes of their solutions characterized with distinct conformational properties. Previous experiments showed that the average size of soft colloids remains invariant below c* and varies characteristically above it. This observation reveals the causality between the conformational evolution and the physical overlap between neighboring particles. Using neutron scattering, we demonstrate that the competition between the interparticle translational diffusion and intraparticle internal dynamics leads to significant conformational evolution below c*. Substantial structural dehydration and slowing-down of internal dynamics are both observed before physical overlap develops. Well below c*, a new threshold of diluteness cD* emerges as the crossover between the characteristic times associated with these two relaxation processes. Below this dynamically defined cD*, the two relaxation processes are essentially uncoupled, and therefore, the majority of the soft colloids retain their unperturbed conformational dimensions. Our observation demonstrates the importance of incorporating dynamical degrees of freedom in defining the threshold of diluteness for this important class of soft matter.
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Small angle neutron scattering (SANS) studies on the structural evolution of pyromellitamide self-assembled gels. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2014; 30:13987-13993. [PMID: 25361640 DOI: 10.1021/la502546n] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
The kinetics of aggregation of two pyromellitamide gelators, tetrabutyl- (C4) and tetrahexyl-pyromellitamide (C6), in deuterated cyclohexane has been investigated by small angle neutron scattering (SANS) for up to 6 days. The purpose of this study was to improve our understanding of how self-assembled gels are formed. Short-term (< 3 h) time scales revealed multiple phases with the data for the tetrabutylpyromellitamide C4, indicating one-dimensional stacking and aggregation corresponding to a multifiber braided cluster arrangement that is about 35 Å in diameter. The corresponding tetrahexylpyromellitamide C6 data suggest that the C6 also forms one-dimensional stacks but that these aggregate to a thicker multifiber braided cluster that has a diameter of about 62 Å. Over a longer period of time, the radius, persistence length, and contour length all continue to increase in 6 days after cooling. These data suggest that structural changes in self-assembled gels occur over a period exceeding several days and that fairly subtle changes in the structure (e.g., tail-length) can influence the packing of molecules in self-assembled gels on the single-to-few fiber bundle stage.
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Abstract
We have used neutron scattering to investigate the influence of concentration on the conformation of a star polymer. By varying the contrast between the solvent and the isotopically labeled stars, we obtain the distributions of polymer and solvent within a star polymer from analysis of scattering data. A correlation between the local desolvation and the inward folding of star branches is discovered. From the perspective of thermodynamics, we find an analogy between the mechanism of polymer localization driven by solvent depletion and that of the hydrophobic collapse of polymers in solutions.
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Superconducting magnetic Wollaston prism for neutron spin encoding. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2014; 85:053303. [PMID: 24880360 DOI: 10.1063/1.4875984] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
A magnetic Wollaston prism can spatially split a polarized neutron beam into two beams with different neutron spin states, in a manner analogous to an optical Wollaston prism. Such a Wollaston prism can be used to encode the trajectory of neutrons into the Larmor phase associated with their spin degree of freedom. This encoding can be used for neutron phase-contrast radiography and in spin echo scattering angle measurement (SESAME). In this paper, we show that magnetic Wollaston prisms with highly uniform magnetic fields and low Larmor phase aberration can be constructed to preserve neutron polarization using high temperature superconducting (HTS) materials. The Meissner effect of HTS films is used to confine magnetic fields produced electromagnetically by current-carrying HTS tape wound on suitably shaped soft iron pole pieces. The device is cooled to ~30 K by a closed cycle refrigerator, eliminating the need to replenish liquid cryogens and greatly simplifying operation and maintenance. A HTS film ensures that the magnetic field transition within the prism is sharp, well-defined, and planar due to the Meissner effect. The spin transport efficiency across the device was measured to be ~98.5% independent of neutron wavelength and energizing current. The position-dependent Larmor phase of neutron spins was measured at the NIST Center for Neutron Research facility and found to agree well with detailed simulations. The phase varies linearly with horizontal position, as required, and the neutron beam shows little depolarization. Consequently, the device has advantages over existing devices with similar functionality and provides the capability for a large neutron beam (20 mm × 30 mm) and an increase in length scales accessible to SESAME to beyond 10 μm. With further improvements of the external coupling guide field in the prototype device, a larger neutron beam could be employed.
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Calmodulin binds a highly extended HIV-1 MA protein that refolds upon its release. Biophys J 2012; 103:541-549. [PMID: 22947870 PMCID: PMC3414894 DOI: 10.1016/j.bpj.2012.06.042] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2012] [Revised: 06/15/2012] [Accepted: 06/28/2012] [Indexed: 10/28/2022] Open
Abstract
Calmodulin (CaM) expression is upregulated upon HIV-1 infection and interacts with proteins involved in viral processing, including the multifunctional HIV-1 MA protein. We present here the results of studies utilizing small-angle neutron scattering with contrast variation that, when considered in the light of earlier fluorescence and NMR data, show CaM binds MA in an extended open-clamp conformation via interactions with two tryptophans that are widely spaced in sequence and space. The interaction requires a disruption of the MA tertiary fold such that MA becomes highly extended in a long snakelike conformation. The CaM-MA interface is extensive, covering ~70% of the length of the MA such that regions known to be important in MA interactions with critical binding partners would be impacted. The CaM conformation is semiextended and as such is distinct from the classical CaM-collapse about short α-helical targets. NMR data show that upon dissociation of the CaM-MA complex, either by the removal of Ca(2+) or increasing ionic strength, MA reforms its native tertiary contacts. Thus, we observe a high level of structural plasticity in MA that may facilitate regulation of its activities via intracellular Ca(2+)-signaling during viral processing.
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Structure of [C4mpyr][NTf2] room-temperature ionic liquid at charged gold interfaces. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2012; 28:7374-81. [PMID: 22515304 DOI: 10.1021/la3005757] [Citation(s) in RCA: 55] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
The structure of 1-butyl-1-methylpyrrolidinium bis(trifluoromethylsulfonyl)imide ([C(4)mpyr][NTf(2)]) room-temperature ionic liquid at an electrified gold interface was studied using neutron reflectometry, cyclic voltammetry, and differential capacitance measurements. Subtle differences were observed between the reflectivity data collected on a gold electrode at three different applied potentials. Detailed analysis of the fitted reflectivity data reveals an excess of [C(4)mpyr](+) at the interface, with the amount decreasing at increasingly positive potentials. A cation rich interface was found even at a positively charged electrode, which indicates a nonelectrostatic (specific) adsorption of [C(4)mpyr](+) onto the gold electrode.
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18
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Surface force confinement cell for neutron reflectometry studies of complex fluids under nanoconfinement. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2008; 79:103908. [PMID: 19044730 DOI: 10.1063/1.3005483] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
In this paper, we describe the construction of a new neutron surface force confinement cell (NSFCC). The NSFCC is equipped with hydraulically powered in situ, temporally stable, force control system for simultaneous neutron reflectometry studies of nanoconfined complex fluid systems. Test measurements with deuterated toluene confined between two opposing diblock copolymer (polystyrene+poly 2-vinylpyridine) coated quartz substrates demonstrate the capabilities of the NSFCC. With increasing hydraulically applied force, a series of well-defined decreasing separations were observed from neutron reflectivity measurements. No noticeable changes in the hydraulic pressure used for controlling the surface separation were observed during the measurements, demonstrating the high stability of the apparatus. This newly designed NSFCC introduces a higher level of control for studies of confinement and consequent finite size effects on nanoscale structure in a variety of complex fluid and soft condensed matter systems.
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The Importance of Thermodynamic Interactions on the Dynamics of Multicomponent Polymer Systems Revealed by Examination of the Dynamics of Copolymer/Homopolymer Blends. Macromolecules 2008. [DOI: 10.1021/ma0704212] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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20
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X-ray and ellipsometric study of strong critical adsorption. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2007; 75:061606. [PMID: 17677272 DOI: 10.1103/physreve.75.061606] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2007] [Indexed: 05/16/2023]
Abstract
Carpenter [Phys. Rev. E 61, 532 (2000)] succeeded in determining a single universal model, called the P1 model, that could describe the ellipsometric critical adsorption data from the liquid-vapor interface of four different critical binary liquid mixtures near their critical demixing temperatures. The P1 model also recently has been used to describe neutron reflectometry data from a critical liquid mixture/crystalline quartz interface. However, in another recent study, the P1 model failed to simultaneously describe x-ray reflectometry and ellipsometry data from the liquid-vapor surface of the critical mixture n -dodecane + tetrabromoethane (DT). In this paper, we resolve this discrepancy between x-ray and ellipsometric data for the DT system. At large length scales (far from the interface) the local concentration is described by the P1 model in order to correctly reproduce the temperature dependence of the ellipsometric data. Close to the interface, however, the molecular structure must be correctly accounted for in order to quantitatively explain the x-ray data. An important conclusion that arises from this study is that neutron or x-ray reflectometry is most sensitive to short-range interfacial structure, but may provide misleading information about long-range interfacial structure. Ellipsometry provides a more accurate measure of this long-range interfacial structure. Complex interfacial structures, possessing both short- and long-range structure, are therefore best studied using multiple techniques.
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Comparison of critical adsorption scaling functions obtained from neutron reflectometry and ellipsometry. J Chem Phys 2007; 126:204704. [PMID: 17552786 DOI: 10.1063/1.2736383] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Carpenter et al. [Phys. Rev. E 59, 5655 (1999); 61, 532 (2000)] managed to explain ellipsometric critical adsorption data collected from the liquid-vapor interface of four different critical binary liquid mixtures near their demixing critical temperature using a single model. This was the first time a single universal function had been found which could quantitatively describe the surface critical behavior of many different mixtures. There have also been various attempts to investigate this surface critical behavior using neutron and x-ray reflectometries. Results have been mixed and have often been at variance with Carpenter et al. In this paper, the authors show that neutron reflectometry data collected from a crystalline quartz-critical mixture interface, specifically deuterated water plus 3-methylpyridine, can be quantitatively explained using the model of Carpenter et al. derived from ellipsometric data.
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Identification and Phylogenetic analysis of thermophilic sulfate-reducing bacteria in oil field samples by 16S rDNA gene cloning and sequencing. Anaerobe 2007; 4:165-74. [PMID: 16887637 DOI: 10.1006/anae.1998.0156] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/1997] [Accepted: 03/30/1998] [Indexed: 11/22/2022]
Abstract
Thermophilic sulfate-reducing bacteria (SRB) have been recognized as an important source of hydrogen sulfide (H2S) in hydrocarbon reservoirs and in production systems. Four thermophilic SRB enrichment cultures from three different oil field samples (sandstone core, drilling mud, and production water) were investigated using 16S rDNA sequence comparative analysis. In total, 15 different clones were identified. We found spore-forming, low G+C content, thermophilic, sulfate-reducing Desulfotomaculum-related sequences present in all oil field samples, and additionally a clone originating from sandstone core which was assigned to the mesophilic Desulfomicrobium group. Furthermore, three clones related to Gram-positive, non-sulfate-reducing Thermoanaerobacter species and four clones close to Clostridium thermocopriae were found in enrichment cultures from sandstone core and from production water, respectively. In addition, the deeply rooted lineage of two of the clones suggested previously undescribed, Gram-positive, low G+C content, thermophilic, obligately anaerobic bacteria present in production water. Such thermophilic, non-sulfate-reducing microorganisms may play an important ecological role alongside SRB in oil field environments.
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Shear-induced collapse in a lyotropic lamellar phase. PHYSICAL REVIEW LETTERS 2005; 95:078302. [PMID: 16196832 DOI: 10.1103/physrevlett.95.078302] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2004] [Revised: 05/03/2005] [Indexed: 05/04/2023]
Abstract
An entropically stabilized cetylpyridinium chloride, hexanol, and heavy brine lyotropic lamellar phase subjected to shear flow has been observed here by small angle neutron scattering to undergo collapse of smectic order above a threshold shear rate. The results are compared with theories predicting that such a lamellar phase sheared above a critical rate should lose its stability by a loss of resistance to compression due to the suppression of membrane fluctuations.
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Surface enrichment of proteins at quartz/water interfaces: A neutron reflectivity study. J Colloid Interface Sci 2005; 285:458-68. [PMID: 15837460 DOI: 10.1016/j.jcis.2004.11.060] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2004] [Accepted: 11/29/2004] [Indexed: 11/29/2022]
Abstract
Neutron reflectivity (NR) was used to study the adsorption of human serum albumin and human fibrinogen on quartz. The proteins were individually and sequentially adsorbed from heavy water and heavy water/methanol mixtures at pH 4 and 7.0. The technique allows for the subnanometer resolution of the adsorbed layer thickness and gross morphology. Under the conditions of our measurements we found that fibrinogen formed a distinct layer that we interpret as a mat of the protein three layers thick whereas albumin formed only diffuse layers. The adsorption pattern of the two proteins changed radically when one protein was adsorbed on top of the other (previously adsorbed). In general our measurements indicate that the adsorbed protein layers on quartz are rather loosely bound and that these layers, incorporating as much as 80% water, extend further into the bulk fluid than might have been expected.
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Topological relaxation of a shear-induced lamellar phase to sponge equilibrium and the energetics of membrane fusion. PHYSICAL REVIEW LETTERS 2004; 93:198301. [PMID: 15600891 DOI: 10.1103/physrevlett.93.198301] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2004] [Indexed: 05/24/2023]
Abstract
We report time-resolved small angle neutron scattering (t-SANS) measurements of the topological relaxation of Couette shear-induced stacked L(alpha) lamellar states to their multiconnected isotropic L3 sponge equilibrium phases in a surfactant bilayer membrane system. Comparison of this structural relaxation time to the interval between diffusive membrane contacts, as determined from dynamic light scattering or estimated from the shear rates required for L(alpha) saturation, allows us to determine the activation energy barrier to the membrane fusion process reestablishing the solution channel handles that characterize the sponge phase.
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Adsorption and Structural Arrangement of Cetyltrimethylammonium Cations at the Silica Nanoparticle−Water Interface. J Phys Chem B 2004. [DOI: 10.1021/jp048325f] [Citation(s) in RCA: 77] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Synthesis of Rutile (α-TiO2) Nanocrystals with Controlled Size and Shape by Low-Temperature Hydrolysis: Effects of Solvent Composition. J Phys Chem B 2004. [DOI: 10.1021/jp0470952] [Citation(s) in RCA: 142] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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28
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Using neutron reflectivity to determine the dynamic properties of a copolymer in a homopolymer matrix. ACTA ACUST UNITED AC 2004. [DOI: 10.1002/polb.20178] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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29
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Fabrication of Near-Infrared Photonic Crystals Using Highly-Monodispersed Submicrometer SiO2 Spheres. J Phys Chem B 2003. [DOI: 10.1021/jp034161b] [Citation(s) in RCA: 67] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Microbially influenced corrosion as a model system for the study of metal microbe interactions: a unifying electron transfer hypothesis. BIOFOULING 2003; 19:65-76. [PMID: 14618690 DOI: 10.1080/0892701021000041078] [Citation(s) in RCA: 134] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
The general term biomineralisation refers to biologically induced mineralisation in which an organism modifies its local microenvironment creating conditions such that there is chemical precipitation of mineral phases extracellularly. Most usually this results from an oxidation or reduction carried out by some microbial species, with the formation of a recognised biomineralised product. These reactions play a major role in microbial physiology and ecology, and are of central importance to such engineering consequences as microbial mining and microbially influenced corrosion. This paper will examine metal microbe interactions, both in naturally occurring microbial ecosystems and in two particular cases of biocorrosion, with the objective of putting forward a unifying hypothesis relevant to the understanding of each of these apparently disparate processes.
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Scaling of shear-induced transformations in membrane phases. PHYSICAL REVIEW LETTERS 2002; 89:168301. [PMID: 12398760 DOI: 10.1103/physrevlett.89.168301] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2002] [Indexed: 05/24/2023]
Abstract
Surfactant sponges are complex-fluid phases made up of convolutions of bilayer sheets. Although isotropic and free flowing they exhibit transient birefringence when stirred, reminiscent of the birefringence of lamellar phases. Previous attempts to understand this effect have led to confusing and often conflicting results. We have used a novel approach to designing the chemical system that gives us control over the relevant parameters needed to study microstructural and macroscopic responses of these phases to shear. We find a remarkable universal scaling behavior for both sponge and shear-induced lamellar states, which resolves a number of long-standing questions about these systems.
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Comment on "Evidence of a sponge-to-lamellar phase transition under shear by X-ray scattering experiments in a couette cell". PHYSICAL REVIEW LETTERS 2002; 88:059601. [PMID: 11863786 DOI: 10.1103/physrevlett.88.059601] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2001] [Indexed: 05/23/2023]
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Adsorbed layer structure of cationic surfactants on quartz. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2001; 63:041604. [PMID: 11308859 DOI: 10.1103/physreve.63.041604] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2000] [Indexed: 05/23/2023]
Abstract
Recent atomic force microscopy (AFM) surface images of surfactant adsorbed at solid and solution interfaces have shown apparent micellar aggregates familiar from bulk self-assembly. This contradicts the classical picture of laterally unstructured bilayers within which neutron reflectometry (NR) measurements have previously been analyzed. Applying both techniques to surfactant adsorption on quartz, we show that film thickness and coverage parameters derived from NR results are generally consistent with those from AFM and bulk self-assembly. NR by itself allows us to distinguish between actual bilayer and probable aggregate adsorption, which will be of particular importance when a solution's rheology makes AFM imaging impractical.
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The same species of sulphate-reducing Desulfomicrobium occur in different oil field environments in the north sea. Lett Appl Microbiol 1999; 29:246-52. [PMID: 10583753 DOI: 10.1046/j.1365-2672.1999.00628.x] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Several metabolic types of sulphate-reducing bacteria, including mesophiles and thermophiles, were successfully obtained from four samples from two different North Sea oil fields. The Gram-negative, rod-shaped, sulphate-reducing strains MM6, EF2, FM2, and GF2 were isolated from drain water, and from drilling muds E, F, and G, respectively. All four isolates grew on lactate, pyruvate, glycerol, and ethanol, with optimal growth temperatures between 25 degrees C and 35 degrees C and at salinities between 0 and 5% NaCl. They were capable of using sulphate, thiosulphate or sulphite, but not nitrate, as electron acceptors. These isolates were tentatively identified to be the same species of Desulfomicrobium based on physiological and biochemical characterization, and 16S rRNA gene analysis. Therefore, the same Desulfomicrobium species was present in different samples from distant oil fields. This result suggests that these microorganisms are likely to be widespread throughout oil field systems, and possibly play an important role in the generation of sulphide.
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Fast relaxation of a hexagonal Poiseuille shear-induced near-surface phase in a threadlike micellar solution. PHYSICAL REVIEW. E, STATISTICAL PHYSICS, PLASMAS, FLUIDS, AND RELATED INTERDISCIPLINARY TOPICS 1999; 60:R1146-9. [PMID: 11969939 DOI: 10.1103/physreve.60.r1146] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/1999] [Revised: 05/14/1999] [Indexed: 04/18/2023]
Abstract
The dynamics of near-surface conformations in complex fluids under flow should dramatically affect their rheological properties. We have made the first measurements resolving the decay kinetics of a hexagonal phase induced in a threadlike polyionic micellar system under Poiseuille shear near a quartz surface. Upon cessation of shearing flow, this minimum interference crystalline phase formed within approximately 20 microm of the surface "melts" to a metastable two-dimensional liquid of aligned micelles in approximately 0.7 s. This is some three orders of magnitude shorter than the time required for bulk (Couette) shear-aligned micelles in this system to reach a fully entangled state.
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Abstract
The cellular physiology of the sulphate-reducing bacteria, and of other sulphidogenic species, is determined by the energetic requirements consequent upon their respiratory mode of metabolism with sulphate and other oxyanions of sulphur as terminal electron acceptors. As a further consequence of their, relatively, restricted catabolic activities and their requirement for conditions of anaerobiosis, sulphidogenic bacteria are almost invariably found in nature as component organisms within microbial consortia. The capacity to generate significant quantities of sulphide influences the overall metabolic activity and species diversity of these consortia, and is the root cause of the environmental impact of the sulphidogenic species: corrosion, pollution and the souring of hydrocarbon reservoirs.
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Use of complementary neutron scattering techniques in studying the effect of a solid/liquid interface on bulk solution structures. Faraday Discuss 1996. [DOI: 10.1039/fd9960400065] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Shear induced hexagonal ordering observed in an ionic viscoelastic fluid in flow past a surface. PHYSICAL REVIEW LETTERS 1994; 72:2219-2222. [PMID: 10055819 DOI: 10.1103/physrevlett.72.2219] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
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Abstract
Application of pressure infusion bags may increase intravenous (IV) flow rates three-fold. Commercially available pressure infusers, manual squeezing of the IV fluid bag, inflating a blood pressure (BP) cuff around the bag, and kneeling on the bag have been used by prehospital personnel attempting to augment fluid infusion rates. To test the efficacy of each these methods, seven experienced paramedics were asked to employ each method in two trials using a 1-liter bag of saline through a 14-gauge, 5.7cm catheter and a standard administration set. Gravity flow from 80 cm served as the control. Pressure infusers generated flow rates of 257+/-54 ml/min and 296+/-53 ml/min when inflated to 300 mmHg and maximum pressure respectively. This rate was 2-2.5 times that of gravity flow (123+/-2 ml/min) and significantly greater than those rates obtained by any other method (p less than .0005). Manually squeezing the bag also was significantly better than was gravity flow with flow rates of 184+/-46 ml/min and 173+/-40 ml/min achieved by each of two different squeezing methods (p less than .01). Neither blood pressure (BP) cuff application and inflation (135+/-28 ml/min) nor kneeling on the bag (125+/-36 ml/min) was better than gravity alone. These results indicate that pressure infusers should be used to the exclusion of other field methods of supplying infusion pressure. If pressure infusers are not available, manually squeezing the bag is the only alternative acceptable in the field.
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Observation of a motion-induced phase shift of neutron de Broglie waves passing through matter near a nuclear resonance. PHYSICAL REVIEW. A, GENERAL PHYSICS 1989; 39:931-937. [PMID: 9901325 DOI: 10.1103/physreva.39.931] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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Null Fizeau effect for thermal neutrons in moving matter. PHYSICAL REVIEW. A, GENERAL PHYSICS 1985; 31:1203-1205. [PMID: 9895612 DOI: 10.1103/physreva.31.1203] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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Axillofemoral and femorofemoral grafts: a 6-year experience with emphasis on the relationship of peroperative flow measurement to graft survival. Br J Surg 1983; 70:326-31. [PMID: 6860907 DOI: 10.1002/bjs.1800700607] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
Over a 6-year period 64 axillofemoral bypass and femorofemoral crossover grafts have been performed in 58 patients, most of whom were considered unfit for intra-abdominal surgery. Indications were peripheral ischaemia in 78 per cent and disabling claudication in 22 per cent. The limb salvage rate at 3 years was 75 per cent. No claudicants lost limbs, but only one-third of patients presenting with forefoot gangrene or ulceration avoided amputation. Most patients presenting with ischaemic symptoms at rest had associated femoropopliteal and distal disease, confirmed by the ankle pressure index measurements, and this influenced graft patency. Although the cumulative patency at 3 years for all grafts combined was 57 per cent with similar patencies for both the axillofemoral and femorofemoral grafts, early occlusion was more common in axillofemoral grafts and this may be reduced in bifemoral grafts by the increased flow rate in the vertical limbs. Peroperative electromagnetic flowmeter measurements were made after reconstruction on 55 femoral arteries in 46 of the patients and graft flow velocities were derived from these measurements. Comparison between velocities from those grafts remaining patent and those subsequently occluding showed a high incidence of occlusion in grafts with a maximal velocity after distal vasodilatation of less than 8 cm/s. Graft occlusion after the first postoperative month was more commonly associated with other factors such as continued smoking, severity of distal disease and perigraft infection.
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Abstract
A method is described for the assay of [
35
S]sulfate reduction in which filter paper wicks are used to trap [
35
S]sulfide. The simplicity of the technique enables large numbers of samples to be conveniently processed. Enhanced sensitivity is achieved since all acid-volatile [
35
S]sulfides produced during the incubation period are counted. Recovery of radioactivity from added Na
2
35
S is excellent (mean, 100.1%; standard deviation, 1.81;
n
= 9) and is unaffected by sulfide concentrations of up to 400 μg per sample. Field trial results with anoxic sediment samples are presented.
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On-line analysis of the femoral artery flow velocity waveform and its application in the diagnosis of arterial disease. JOURNAL OF BIOMEDICAL ENGINEERING 1983; 5:151-6. [PMID: 6687913 DOI: 10.1016/0141-5425(83)90035-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
Analysis of the instantaneous peak velocity waveform obtained from the common femoral artery can be used to provide an objective assessment of arterial disease in the leg. The calculation of waveform indices pulsatility index and rise time together with principal component analysis has been found to be the ideal method by which to assess the flow data on-line.
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Abstract
An abdominal aortic aneurysm extending above the renal vessels was managed by resection, grafting and renal autotransplantation. The use of the technique is discussed.
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Sex and the dental practice: a reinterpretation of the history of dental hygienists. BULLETIN OF THE HISTORY OF DENTISTRY 1980; 28:64-8. [PMID: 7013878] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
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