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Zhang W, Dun S, Ping Y, Wang Q, Tana S, Tana A, Qin S, Bao X, Qimuge A, Baiyin T, Yang D, Bao S, Baoyin S, Qimuge W. Differentially expressed long noncoding RNAs and mRNAs in PC12 cells under lysophosphatidylcholine stimulation. Sci Rep 2022; 12:19333. [PMID: 36369435 PMCID: PMC9652419 DOI: 10.1038/s41598-022-21676-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2021] [Accepted: 09/30/2022] [Indexed: 11/13/2022] Open
Abstract
Lysophosphatidylcholine (LPC) was previously found to show neuroprotective effect on nerve growth factor (NGF) and brain derived neurotrophic factor (BDNF) induced signalings. Also, numerous studies reported the emerging roles of long noncoding RNAs (LncRNAs) involved in neurodegenerative disease. However, the biological mechanism of LPC and expression profile of lncRNAs has not been reported. Here, lncRNAs in PC12 cells under LPC and NGF treatment were analyzed using high throughput sequencing technology for the first time. We identified 564 annotated and 1077 novel lncRNAs in PC12 cells. Among them, 121 lncRNAs were differentially expressed in the PC12 cells under LPC stimulation. KEGG analysis showed that differentially expressed mRNAs co-expressed with lncRNAs mainly enriched in ribosome, oxidative phosphorylation, Parkinson's disease, Huntington's disease and Alzheimer's disease etc. LncRNA-mRNA network analysis showed that lncRNA ENSRNOT00000082515 had interactions with 626 different mRNAs suggesting that lncRNA ENSRNOT00000082515 probably play vital role. Finally, sequencing data were validated by qRT-PCR for ENSRNOT00000084874, ENSRNOT00000082515, LNC_001033 forward Fgf18, Vcam1, and Pck2.
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Affiliation(s)
- Wen Zhang
- grid.411643.50000 0004 1761 0411School of Life Science, Inner Mongolia University, Hohhot, 010021 China
| | - Su Dun
- Research and Development Center, HUA Cloud Intelligent Healthcare Co., Ltd, Shenzhen, 518000 China
| | - Yin Ping
- grid.411647.10000 0000 8547 6673Affiliated Hospital of Inner Mongolia University for Nationalities, Tongliao, 028000 China
| | - Qingliang Wang
- grid.410612.00000 0004 0604 6392Inner Mongolia Medical University, Hohhot, 010010 China
| | - Siqin Tana
- grid.490194.1Inner Mongolia International Mongolian Hospital, Hohhot, 010065 China
| | - Aodong Tana
- grid.490194.1Inner Mongolia International Mongolian Hospital, Hohhot, 010065 China
| | - Si Qin
- grid.490194.1Inner Mongolia International Mongolian Hospital, Hohhot, 010065 China
| | - Xilinqiqige Bao
- grid.410612.00000 0004 0604 6392Inner Mongolia Medical University, Hohhot, 010010 China
| | - Alateng Qimuge
- grid.490194.1Inner Mongolia International Mongolian Hospital, Hohhot, 010065 China
| | - Tegexi Baiyin
- grid.411647.10000 0000 8547 6673Affiliated Hospital of Inner Mongolia University for Nationalities, Tongliao, 028000 China
| | - Dezhi Yang
- grid.490194.1Inner Mongolia International Mongolian Hospital, Hohhot, 010065 China
| | - Siqin Bao
- grid.490194.1Inner Mongolia International Mongolian Hospital, Hohhot, 010065 China
| | - Seyin Baoyin
- grid.490194.1Inner Mongolia International Mongolian Hospital, Hohhot, 010065 China
| | - Wuhan Qimuge
- grid.490194.1Inner Mongolia International Mongolian Hospital, Hohhot, 010065 China ,Inner Mongolia Traditional Chinese&Mongolian Medical Research Institute, Hohhot, 010017 China
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