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Guzel Y, Aslan E, Turkmenoglu B, Su EM. 4D-QSAR Studies Using a New Descriptor of the Klopman Index: Antibacterial Activities of Sulfone Derivatives Containing 1, 3, 4-Oxadiazole Moiety Based on MCET Model. Curr Comput Aided Drug Des 2018; 14:207-220. [DOI: 10.2174/1573409914666180514093543] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2017] [Revised: 12/07/2017] [Accepted: 05/10/2018] [Indexed: 11/22/2022]
Affiliation(s)
- Yahya Guzel
- Department of Chemistry, Faculty of Science, Erciyes University, 38039, Kayseri, Turkey
| | - Ertugrul Aslan
- Department of Chemistry, Faculty of Science, Erciyes University, 38039, Kayseri, Turkey
| | - Burcin Turkmenoglu
- Department of Chemistry, Faculty of Science, Erciyes University, 38039, Kayseri, Turkey
| | - Ekrem Mesut Su
- Department of Chemistry, Faculty of Science, Erciyes University, 38039, Kayseri, Turkey
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Abstract
PURPOSE To compare the use of topical tranexamic acid (TXA) with postoperative autologous transfusion (PAT) in terms of blood loss, need for allogeneic blood transfusion, and cost-effectiveness. METHODS Records of 25 men and 125 women (mean age, 67 years) who underwent primary unilateral total knee arthroplasty (TKA) and were randomised to the PAT group (n=50), topical TXA group (n=50), or routine drainage group (control) [n=50] were reviewed. Pre- and post-operative haemoglobin level, total postoperative drainage volume, and the need for allogeneic blood transfusion were recorded. RESULTS The 3 groups were comparable in terms of age, gender, and preoperative haemoglobin level. The total postoperative drainage volume was lower in the TXA group than the PAT or routine drainage groups (174.48 vs. 735 vs. 760 ml, p<0.001). The postoperative haemoglobin level was lower in the routine drainage group than the PAT or TXA groups on day 1 (11.67 vs. 12.33 vs. 12.40 g/dl, p<0.001) and day 3 (9.9 vs. 10.7 vs. 11.14 g/dl, p<0.001). The number of patients who received allogeneic blood transfusion was higher in the routine drainage group (12 and 4 patients received 1 and 2 units of blood, respectively) than the PAT group (4 patients received 1 unit of blood) or the TXA group (none required transfusion) [p<0.001], and the respective total transfusion cost was $1200, $240, and $0. The total cost was lowest in the TXA group followed by the routine drainage group and PAT group ($200 vs. $1200 vs. $12 390). No patient developed acute infection, deep venous thrombosis, pulmonary embolism, myocardial infarction, or stroke. CONCLUSION Compared with PAT, topical TXA was more cost-effective and resulted in less total postoperative drainage volume and less need for allogeneic blood transfusion.
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Affiliation(s)
- Y Guzel
- Ordu University Medical School, Turkey
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Akin N, Bildik G, Guzel Y, Seyhan Ata A, Balaban B, Urman B, Oktem O. Activin-a promotes luteal regression by down-regulating the expression of steroidogenic enzymes and up-regulating BMP-6 and activin-A subunit in human luteal granulosa cells. Fertil Steril 2015. [DOI: 10.1016/j.fertnstert.2015.07.360] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Bildik G, Akin N, Guzel Y, Yakin K, Alper E, Ata AS, Balaban B, Urman B, Oktem O. Gonadotropin stimulation alters the expression of local growth factors in the granulosa cells involved in paracrine communication, dominant follicle selection and luteinization. Fertil Steril 2015. [DOI: 10.1016/j.fertnstert.2015.07.1011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Yilmaz H, Sizochenko N, Rasulev B, Toropov A, Guzel Y, Kuz'min V, Leszczynska D, Leszczynski J. Amino substituted nitrogen heterocycle ureas as kinase insert domain containing receptor (KDR) inhibitors: Performance of structure–activity relationship approaches. J Food Drug Anal 2015; 23:168-175. [PMID: 28911371 PMCID: PMC9351780 DOI: 10.1016/j.jfda.2015.03.001] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
A quantitative structure–activity relationship (QSAR) study was performed on a set of amino-substituted nitrogen heterocyclic urea derivatives. Two novel approaches were applied: (1) the simplified molecular input-line entry systems (SMILES) based optimal descriptors approach; and (2) the fragment-based simplex representation of molecular structure (SiRMS) approach. Comparison with the classic scheme of building up the model and balance of correlation (BC) for optimal descriptors approach shows that the BC scheme provides more robust predictions than the classic scheme for the considered pIC50 of the heterocyclic urea derivatives. Comparison of the SMILES-based optimal descriptors and SiRMS approaches has confirmed good performance of both techniques in prediction of kinase insert domain containing receptor (KDR) inhibitory activity, expressed as a logarithm of inhibitory concentration (pIC50) of studied compounds.
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Affiliation(s)
- Hayriye Yilmaz
- Kayseri Vocational School, Biomedical Devices and Technologies, Erciyes University, 38039, Kayseri, Turkey; Interdisciplinary Center for Nanotoxicity, Department of Chemistry and Biochemistry, Jackson State University, Jackson, MS, 39217, USA
| | - Natalia Sizochenko
- Interdisciplinary Center for Nanotoxicity, Department of Chemistry and Biochemistry, Jackson State University, Jackson, MS, 39217, USA; Odessa I.I. Mechnikov National University, Department of Chemistry, Dvoryanskaya Street, 2, 65082, Odessa, Ukraine
| | - Bakhtiyor Rasulev
- Interdisciplinary Center for Nanotoxicity, Department of Chemistry and Biochemistry, Jackson State University, Jackson, MS, 39217, USA
| | - Andrey Toropov
- Laboratory of Environmental Chemistry and Toxicology, IRCCS-Istituto di Ricerche Farmacologiche Mario Negri, 20156, Via La Masa 19, Milano, Italy
| | - Yahya Guzel
- Department of Chemistry, Faculty of Science, Erciyes University, 38039, Kayseri, Turkey
| | - Viktor Kuz'min
- Odessa I.I. Mechnikov National University, Department of Chemistry, Dvoryanskaya Street, 2, 65082, Odessa, Ukraine
| | - Danuta Leszczynska
- Department of Civil and Environmental Engineering, Jackson State University, Jackson, MS, 39217, USA
| | - Jerzy Leszczynski
- Interdisciplinary Center for Nanotoxicity, Department of Chemistry and Biochemistry, Jackson State University, Jackson, MS, 39217, USA.
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Oktem O, Guzel Y, Taskiran C, Ince U, Palaoglu E, Urman B. Higher androgen and estrogen output and less follicular atresia can be induced in healthy ovaries by culturing them with sera from PCOS patients: is PCOS really of intraovarian origin? Fertil Steril 2013. [DOI: 10.1016/j.fertnstert.2013.07.1797] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Yilmaz H, Ceyhan EC, Guzel Y. A New Charge Analysis Derived From the Results of Semi-Emprical Mo-Lcao Calculation. Journal of the Korean Chemical Society 2012. [DOI: 10.5012/jkcs.2012.56.2.195] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Yilmaz H, Guzel Y, Onal Z, Altiparmak G, Kocakaya SO. 4D-QSAR Study of p56IckProtein Tyrosine Kinase Inhibitory Activity of Flavonoid Derivatives Using MCET Method. B KOREAN CHEM SOC 2011. [DOI: 10.5012/bkcs.2011.32.12.4352] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Guzel Y, Sivritas K. Three-dimensional model of nonsteroidal estrogen receptor ligand binding/electron topological method. Arzneimittelforschung 2004; 54:348-54. [PMID: 15281621 DOI: 10.1055/s-0031-1296982] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/30/2023]
Abstract
Three-dimensional quantitative structure-activity relationship (3D-QSAR) models have been obtained using the electron topological method (ETM) for estrogen (estrone, CAS 53-16-7) receptor (ER) affinities. This method was used to identify regions of the enzyme and inhibitors where steric and electrostatic effects correlate strongly with biological activity. Thirty compounds belong to a series of diethylstilbestrol (CAS 56-53-1, DES) and indenestrol (CAS 24643-94-5) analogues whose affinities for ER have been, theoretically, investigated. After energy minimizations and molecular dynamics calculations were performed to find the ground state conformer for each molecule, quantum chemical properties of each molecule were defined and in ETM their matrices were compared with those of the reference molecule. It is shown that the molecular fragments responsible for this affinity possess fixed electronic and geometric characteristics associated with a distinct arrangement and steric accessibility of an oxygen atom and a group of carbon atoms. Several parameters were modified in order to analyze their influence onto the correlation between binding affinities. The highest correlation coefficient (R2 = 0.930, SE = 0.403) was obtained with the structure of the active fragment and the orientation of aliphatic and phenolic substituents.
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Affiliation(s)
- Yahya Guzel
- Erciyes University, Faculty of Science and Art, Department of Chemistry, Kayseri, Turkey.
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Guzel Y, Ozturk E. Study of the binding affinity for corticosteroid-binding globulin (CBG) using the electron topological method (ETM) as three-dimensional quantitative structure-activity relationship (3D QSAR). Bioorg Med Chem 2003; 11:4383-8. [PMID: 13129576 DOI: 10.1016/s0968-0896(03)00461-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The Electron Topological Method, called ETM, is a descriptor for predicting the biological activities of molecules based on three-dimensional quantitative structure-activity relations (3D QSAR). ETM uses a modified electron topological state index to substitute for electronic properties and a topological distance for the relative distance in the molecule. It is shown that the molecular fragments responsible for this activity possess fixed electronic and geometric characteristics associated with a distinct arrangement and the steric accessibility of an oxygen atom and a group of carbon atoms. After that, it is essential to employ a linear regression analysis technique to derive a 3D QSAR model relating the biological activities to the ETM. The ETM is used to study the 3D QSAR of the corticosteroid-binding globulin (CBG) binding affinity to 31 steroids, and resulting models have a comparable to current 3D methods such as CoMFA. Though the ETM is a descriptor based on 3D topological information obtained by quantum chemical derived descriptors, give the best answer for both the similarity analysis and the statistical fitting.
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Affiliation(s)
- Yahya Guzel
- Erciyes University, Faculty of Science and Art, Departments of Chemistry, 38039 Kayseri, Turkey.
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Guzel Y, Kopar AK. Investigation of antiulcer activities of imidazo[1,2-alpha]pyridinyl-2-alkylaminobenzoxazoles and 5,6,7,8-tetahydroimidazo[1,2-alpha]pyridinyl-benzoxazoles with electron-topological (ET) method. Arch Pharm (Weinheim) 2002; 335:27-32. [PMID: 11933677 DOI: 10.1002/1521-4184(200201)335:1<27::aid-ardp27>3.0.co;2-v] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
The study presents structure-activity considerations of a series of imidazo[1,2-alpha]pyridiny-2-alkylaminobenzoxazoles(I) and 5,6,7,8-tetahydroimidazo[1,2-alpha]pyridinylbenzoxazoles(II) investigated for anti-stress ulcer activity with the electron-topological method. A series of 39 compounds including 24 active and 15 weakly active was studied. It is shown that the fragment determined by the electron-topological method in an active molecule is responsible for anti-stress ulcer activity. Quantitative structure-activity relationships with electron topological approach of these compounds are discussed in terms of the statistical program STATGRAF-7.0.
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Affiliation(s)
- Yahya Guzel
- Erciyes University, Faculty of Arts and Science, Department of Chemistry, 38039 Kayseri, Turkey.
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Dimoglo A, Gorbachov M, Lesnik T, Saraçoglu M, Guzel Y, Yildirim I. Investigation of the Relationship Between Chemical Structure and Anti-HIV-1 Activity in a Class of Nucleoside Analogues: Electron-Topological Approach. Curr Med Chem 1997. [DOI: 10.2174/0929867304666220309195005] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
The relationship between chemical structure and anti-HIV-1 activity was investigated in the series of nucleoside analogues including 71
compounds (39 active and 32 inactive ones). ET-method has been used to reveal the features of activity and to construct a system for the activity prediction regarding new compound design with the properties given beforehand. Two fragments of activity are found which have comparatively high degree of their realization in the class of active compounds - 92 %.
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Affiliation(s)
- A.S. Dimoglo
- lnstitute of Chemistry, Academy of Sciences, Academiei str., 3, Kishinev 277028, Moldova
| | - M.Y. Gorbachov
- lnstitute of Chemistry, Academy of Sciences, Academiei str., 3, Kishinev 277028, Moldova
| | - T.l. Lesnik
- lnstitute of Chemistry, Academy of Sciences, Academiei str., 3, Kishinev 277028, Moldova
| | - M. Saraçoglu
- Erciyes University, Department of Chemistry, Kayseri 38039, Turkiye
| | - Y. Guzel
- Erciyes University, Department of Chemistry, Kayseri 38039, Turkiye
| | - I. Yildirim
- Erciyes University, Department of Chemistry, Kayseri 38039, Turkiye
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