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1
Johnson JA, Athrey G, Anderson CM, Bell DA, Dixon A, Kumazawa Y, Maechtle T, Meeks GW, Mindell D, Nakajima K, Novak B, Talbot S, White C, Zhan X. Whole-genome survey reveals extensive variation in genetic diversity and inbreeding levels among peregrine falcon subspecies. Ecol Evol 2023;13:e10347. [PMID: 37484928 PMCID: PMC10361364 DOI: 10.1002/ece3.10347] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2023] [Revised: 07/04/2023] [Accepted: 07/10/2023] [Indexed: 07/25/2023]  Open
2
Xiaokaiti X, Hashiguchi Y, Ota H, Kumazawa Y. Evolution of the Noncoding Features of Sea Snake Mitochondrial Genomes within Elapidae. Genes (Basel) 2022;13:genes13081470. [PMID: 36011381 PMCID: PMC9407768 DOI: 10.3390/genes13081470] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Revised: 08/12/2022] [Accepted: 08/13/2022] [Indexed: 02/07/2023]  Open
3
Shirasawa H, Kumazawa Y, Sato W, Togashi K, Ono N, Fujishima A, Terada Y. P-346 First comparison of the egg freezing and storage cost between medical adaptation and social adaptation of Japan fertility hospitals and clinics based on institution's websites. Hum Reprod 2022. [DOI: 10.1093/humrep/deac107.329] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
4
Hirakawa T, Goto M, Takahashi K, Iwasawa T, Fujishima A, Makino K, Shirasawa H, Sato W, Sato T, Kumazawa Y, Terada Y. Na+/K+ ATPase α1 and β3 subunits are localized to the basolateral membrane of trophectoderm cells in human blastocysts. Hum Reprod 2022;37:1423-1430. [PMID: 35640043 PMCID: PMC9247425 DOI: 10.1093/humrep/deac124] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2022] [Revised: 05/09/2022] [Indexed: 11/25/2022]  Open
5
Kambayashi C, Kakehashi R, Sato Y, Mizuno H, Tanabe H, Rakotoarison A, Künzel S, Furuno N, Ohshima K, Kumazawa Y, Nagy ZT, Mori A, Allison A, Donnellan SC, Ota H, Hoso M, Yanagida T, Sato H, Vences M, Kurabayashi A. Geography-Dependent Horizontal Gene Transfer from Vertebrate Predators to Their Prey. Mol Biol Evol 2022;39:6563207. [PMID: 35417559 PMCID: PMC9007160 DOI: 10.1093/molbev/msac052] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]  Open
6
Maeda E, Jwa SC, Kumazawa Y, Saito K, Iba A, Yanagisawa A, Kuwahara A, Saito H, Terada Y, Fukuda T, Ishihara O, Kobayashi Y. P–721 Probability of receiving assisted reproductive technology treatment through out-of-pocket payment and household income: A discrete choice experiment in Japan. Hum Reprod 2021. [DOI: 10.1093/humrep/deab130.720] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
7
Nasu K, Yokoyama Y, Sun Y, Suzuki-Matsubara M, Teramoto T, Moriyama A, Kawase M, Kumazawa Y. Mitochondrial genome of Cipangopaludina japonica (Gastropoda: Viviparidae) with a tRNA gene rearrangement. Mitochondrial DNA B Resour 2020. [DOI: 10.1080/23802359.2020.1735269] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]  Open
8
Matsubara K, Kumazawa Y, Ota H, Nishida C, Matsuda Y. Karyotype Analysis of Four Blind Snake Species (Reptilia: Squamata: Scolecophidia) and Karyotypic Changes in Serpentes. Cytogenet Genome Res 2019;157:98-106. [PMID: 30754040 DOI: 10.1159/000496554] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]  Open
9
Atminarso D, Wibowo A, Kusuma WE, Prianto E, Ahnelt H, Vasemägi A, Kumazawa Y. The complete mitochondrial DNA sequence of Pectenocypris sp. (Actinopterygii: Cyprinidae) from Serkap River, Sumatra, Indonesia. MITOCHONDRIAL DNA PART B-RESOURCES 2018;3:122-124. [PMID: 33474089 PMCID: PMC7799607 DOI: 10.1080/23802359.2018.1424585] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
10
Sun Y, Kurisaki M, Hashiguchi Y, Kumazawa Y. Variation and evolution of polyadenylation profiles in sauropsid mitochondrial mRNAs as deduced from the high-throughput RNA sequencing. BMC Genomics 2017;18:665. [PMID: 28851277 PMCID: PMC5576253 DOI: 10.1186/s12864-017-4080-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2017] [Accepted: 08/21/2017] [Indexed: 01/18/2023]  Open
11
Kusuma WE, Samuel PD, Wiadnya DGR, Hariati AM, Kumazawa Y. Complete mitogenome sequence of Rasbora argyrotaenia (Actinopterygii: Cyprinidae). MITOCHONDRIAL DNA PART B-RESOURCES 2017;2:373-374. [PMID: 33473832 PMCID: PMC7800954 DOI: 10.1080/23802359.2017.1347835] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
12
Morita H, Hasunuma R, Hoshino M, Fujihara M, Tanaka S, Yamamoto S, Kumazawa Y. Difference in clearance of exogenously administered smooth-form LPS following host responses among normal, sensitized and LPS-tolerant mice. ACTA ACUST UNITED AC 2016. [DOI: 10.1177/096805199700400605] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
13
Morita H, Hasunuma R, Fujihara M, Tanaka S, Galanos C, Freudenberg M, Morrison D, Kumazawa Y. Measurement of different types of endotoxin in murine plasma by pretreatment with alkaline reagent and kinetic chromogenic Limulus test. ACTA ACUST UNITED AC 2016. [DOI: 10.1177/096805199700400505] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
14
Matsubara K, Nishida C, Matsuda Y, Kumazawa Y. Sex chromosome evolution in snakes inferred from divergence patterns of two gametologous genes and chromosome distribution of sex chromosome-linked repetitive sequences. ZOOLOGICAL LETTERS 2016;2:19. [PMID: 27570632 PMCID: PMC5002183 DOI: 10.1186/s40851-016-0056-1] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/09/2016] [Accepted: 08/18/2016] [Indexed: 06/06/2023]
15
Matsuzawa Y, Kamezaki N, Ishihara T, Omuta K, Takeshita H, Goto K, Arata T, Honda H, Kameda K, Kashima Y, Kayo M, Kawazu I, Kodama J, Kumazawa Y, Kuroyanagi K, Mizobuchi K, Mizuno K, Oki K, Watanabe KK, Yamamoto A, Yamashita Y, Yamato T, Hamabata T, Ishizaki A, Dutton PH. Fine-scale genetic population structure of loggerhead turtles in the Northwest Pacific. ENDANGER SPECIES RES 2016. [DOI: 10.3354/esr00724] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]  Open
16
Kusuma WE, Kumazawa Y. Complete mitochondrial genome sequences of two Indonesian rasboras (Rasbora aprotaenia and Rasbora lateristriata). Mitochondrial DNA A DNA Mapp Seq Anal 2015;27:4222-4223. [PMID: 26061337 DOI: 10.3109/19401736.2015.1022749] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
17
Oba Y, Ôhira H, Murase Y, Moriyama A, Kumazawa Y. DNA barcoding of Japanese click beetles (Coleoptera, Elateridae). PLoS One 2015;10:e0116612. [PMID: 25636000 PMCID: PMC4312051 DOI: 10.1371/journal.pone.0116612] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2014] [Accepted: 12/11/2014] [Indexed: 12/05/2022]  Open
18
Kumazawa Y, Miura S, Yamada C, Hashiguchi Y. Gene rearrangements in gekkonid mitochondrial genomes with shuffling, loss, and reassignment of tRNA genes. BMC Genomics 2014;15:930. [PMID: 25344428 PMCID: PMC4223735 DOI: 10.1186/1471-2164-15-930] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2014] [Accepted: 10/13/2014] [Indexed: 02/07/2023]  Open
19
Baba S, Takanoha S, Ishiyama A, Komaki H, Takeshita E, Imaizumi H, Abe Y, Kobayashi M, Kumazawa Y, Sasaki M. G.P.179. Neuromuscul Disord 2014. [DOI: 10.1016/j.nmd.2014.06.221] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
20
Ratmuangkhwang S, Musikasinthorn P, Kumazawa Y. Molecular phylogeny and biogeography of air sac catfishes of the Heteropneustes fossilis species complex (Siluriformes: Heteropneustidae). Mol Phylogenet Evol 2014;79:82-91. [PMID: 24875251 DOI: 10.1016/j.ympev.2014.05.009] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2013] [Revised: 03/17/2014] [Accepted: 05/06/2014] [Indexed: 10/25/2022]
21
Matsubara K, Kuraku S, Tarui H, Nishimura O, Nishida C, Agata K, Kumazawa Y, Matsuda Y. Intra-genomic GC heterogeneity in sauropsids: evolutionary insights from cDNA mapping and GC(3) profiling in snake. BMC Genomics 2012;13:604. [PMID: 23140509 PMCID: PMC3549455 DOI: 10.1186/1471-2164-13-604] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2012] [Accepted: 10/24/2012] [Indexed: 12/19/2022]  Open
22
Calenic B, Yaegaki K, Ishkitiev N, Kumazawa Y, Imai T, Tanaka T. p53-Pathway activity and apoptosis in hydrogen sulfide-exposed stem cells separated from human gingival epithelium. J Periodontal Res 2012;48:322-30. [DOI: 10.1111/jre.12011] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/21/2012] [Indexed: 12/13/2022]
23
Jonniaux P, Hashiguchi Y, Kumazawa Y. Mitochondrial genomes of two African geckos of genus Hemitheconyx (Squamata: Eublepharidae). ACTA ACUST UNITED AC 2012;23:278-9. [PMID: 22708855 DOI: 10.3109/19401736.2012.668898] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
24
Dehara Y, Hashiguchi Y, Matsubara K, Yanai T, Kubo M, Kumazawa Y. Characterization of squamate olfactory receptor genes and their transcripts by the high-throughput sequencing approach. Genome Biol Evol 2012;4:602-16. [PMID: 22511035 PMCID: PMC3342882 DOI: 10.1093/gbe/evs041] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]  Open
25
Marzulli G, Magrone T, Kawaguchi K, Kumazawa Y, Jirillo E. Fermented Grape Marc (FGM): Immunomodulating Properties and its Potential Exploitation in the Treatment of Neurodegenerative Diseases. Curr Pharm Des 2012;18:43-50. [DOI: 10.2174/138161212798919011] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2011] [Accepted: 10/13/2011] [Indexed: 11/22/2022]
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