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Yang F, Cao LJ, Chen JC, Song W, Yu Y, Wei SJ. Nuclear and mitochondrial genomes of Polylopha cassiicola: the first assembly in Chlidanotinae (Tortricidae). Sci Data 2024; 11:419. [PMID: 38653995 PMCID: PMC11039721 DOI: 10.1038/s41597-024-03255-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2023] [Accepted: 04/11/2024] [Indexed: 04/25/2024] Open
Abstract
Tortricidae is one of the largest families in Lepidoptera, including subfamilies of Tortricinae, Olethreutinae, and Chlidanotinae. Here, we assembled the gap-free genome for the subfamily Chlidanotinae using Illumina, Nanopore, and Hi-C sequencing from Polylopha cassiicola, a pest of camphor trees in southern China. The nuclear genome is 302.03 Mb in size, with 36.82% of repeats and 98.4% of BUCSO completeness. The karyotype is 2n = 44 for males. We identified 15412 protein-coding genes, 1052 tRNAs, and 67 rRNAs. We also determined the mitochondrial genome of this species and annotated 13 protein-coding genes, 22 tRNAs, and one rRNA. These high-quality genomes provide valuable information for studying phylogeny, karyotypic evolution, and adaptive evolution of tortricid moths.
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Affiliation(s)
- Fangyuan Yang
- Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China
| | - Li-Jun Cao
- Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China
| | - Jin-Cui Chen
- Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China
| | - Wei Song
- Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China
| | - Yuzhu Yu
- Guangxi National Qinlian Forest Farm, Guangxi, China
| | - Shu-Jun Wei
- Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China.
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Feng M, Peng S, Wang Y, Ciais P, Goll DS, Chang J, Fang Y, Houlton BZ, Liu G, Sun Y, Xi Y. Overestimated nitrogen loss from denitrification for natural terrestrial ecosystems in CMIP6 Earth System Models. Nat Commun 2023; 14:3065. [PMID: 37244896 DOI: 10.1038/s41467-023-38803-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Accepted: 05/12/2023] [Indexed: 05/29/2023] Open
Abstract
Denitrification and leaching nitrogen (N) losses are poorly constrained in Earth System Models (ESMs). Here, we produce a global map of natural soil 15N abundance and quantify soil denitrification N loss for global natural ecosystems using an isotope-benchmarking method. We show an overestimation of denitrification by almost two times in the 13 ESMs of the Sixth Phase Coupled Model Intercomparison Project (CMIP6, 73 ± 31 Tg N yr-1), compared with our estimate of 38 ± 11 Tg N yr-1, which is rooted in isotope mass balance. Moreover, we find a negative correlation between the sensitivity of plant production to rising carbon dioxide (CO2) concentration and denitrification in boreal regions, revealing that overestimated denitrification in ESMs would translate to an exaggeration of N limitation on the responses of plant growth to elevated CO2. Our study highlights the need of improving the representation of the denitrification in ESMs and better assessing the effects of terrestrial ecosystems on CO2 mitigation.
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Affiliation(s)
- Maoyuan Feng
- Sino-French Institute for Earth System Science, College of Urban and Environmental Sciences, and Laboratory for Earth Surface Processes, Peking University, Beijing, China
- Institute of Carbon Neutrality, Peking University, Beijing, China
| | - Shushi Peng
- Sino-French Institute for Earth System Science, College of Urban and Environmental Sciences, and Laboratory for Earth Surface Processes, Peking University, Beijing, China.
- Institute of Carbon Neutrality, Peking University, Beijing, China.
| | - Yilong Wang
- State Key Laboratory of Tibetan Plateau Earth System, Resources and Environment, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing, China
| | - Philippe Ciais
- Laboratoire des Sciences du Climat et de l'Environnement, LSCE/IPSL, CEA-CNRS-UVSQ, Université Paris-Saclay, Gif-sur-Yvette, France
- The Cyprus Institute 20 Konstantinou Kavafi Street, 2121, Nicosia, Cyprus
| | - Daniel S Goll
- Laboratoire des Sciences du Climat et de l'Environnement, LSCE/IPSL, CEA-CNRS-UVSQ, Université Paris-Saclay, Gif-sur-Yvette, France
| | - Jinfeng Chang
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China
| | - Yunting Fang
- CAS Key Laboratory of Forest Ecology and Management, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, China
| | - Benjamin Z Houlton
- Department of Ecology and Evolutionary Biology and Department of Global Development, CALS, Cornell University, Ithaca, NY, USA
| | - Gang Liu
- Sino-French Institute for Earth System Science, College of Urban and Environmental Sciences, and Laboratory for Earth Surface Processes, Peking University, Beijing, China
- Institute of Carbon Neutrality, Peking University, Beijing, China
| | - Yan Sun
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
| | - Yi Xi
- Sino-French Institute for Earth System Science, College of Urban and Environmental Sciences, and Laboratory for Earth Surface Processes, Peking University, Beijing, China
- Laboratoire des Sciences du Climat et de l'Environnement, LSCE/IPSL, CEA-CNRS-UVSQ, Université Paris-Saclay, Gif-sur-Yvette, France
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