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Sysoev Y, Bazhenova E, Shkorbatova P, Kovalev G, Labetov I, Merkulyeva N, Shkarupa D, Musienko P. Functional mapping of the lower urinary tract by epidural electrical stimulation of the spinal cord in decerebrated cat model. Sci Rep 2024; 14:9654. [PMID: 38670988 PMCID: PMC11053135 DOI: 10.1038/s41598-024-54209-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2023] [Accepted: 02/09/2024] [Indexed: 04/28/2024] Open
Abstract
Several neurologic diseases including spinal cord injury, Parkinson's disease or multiple sclerosis are accompanied by disturbances of the lower urinary tract functions. Clinical data indicates that chronic spinal cord stimulation can improve not only motor function but also ability to store urine and control micturition. Decoding the spinal mechanisms that regulate the functioning of detrusor (Detr) and external urethral sphincter (EUS) muscles is essential for effective neuromodulation therapy in patients with disturbances of micturition. In the present work we performed a mapping of Detr and EUS activity by applying epidural electrical stimulation (EES) at different levels of the spinal cord in decerebrated cat model. The study was performed in 5 adult male cats, evoked potentials were generated by EES aiming to recruit various spinal pathways responsible for LUT and hindlimbs control. Recruitment of Detr occurred mainly with stimulation of the lower thoracic and upper lumbar spinal cord (T13-L1 spinal segments). Responses in the EUS, in general, occurred with stimulation of all the studied sites of the spinal cord, however, a pronounced specificity was noted for the lower lumbar/upper sacral sections (L7-S1 spinal segments). These features were confirmed by comparing the normalized values of the slope angles used to approximate the recruitment curve data by the linear regression method. Thus, these findings are in accordance with our previous data obtained in rats and could be used for development of novel site-specific neuromodulation therapeutic approaches.
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Affiliation(s)
- Yuriy Sysoev
- Pavlov Institute of Physiology, Russian Academy of Sciences (RAS), Saint-Petersburg, Russia
- Department of Neuroscience, Sirius University of Science and Technology, Sirius, Russia, 354340
- Department of Pharmacology and Clinical Pharmacology, Saint-Petersburg State Chemical Pharmaceutical University, Saint-Petersburg, Russia
| | - Elena Bazhenova
- Pavlov Institute of Physiology, Russian Academy of Sciences (RAS), Saint-Petersburg, Russia
- Institute of Translational Biomedicine, Saint-Petersburg State University, Saint-Petersburg, Russia
| | - Polina Shkorbatova
- Pavlov Institute of Physiology, Russian Academy of Sciences (RAS), Saint-Petersburg, Russia
- Department of Neuroscience, Sirius University of Science and Technology, Sirius, Russia, 354340
- Institute of Translational Biomedicine, Saint-Petersburg State University, Saint-Petersburg, Russia
| | - Gleb Kovalev
- Saint-Petersburg State University Hospital, Saint-Petersburg, Russia
| | - Ivan Labetov
- Saint-Petersburg State University Hospital, Saint-Petersburg, Russia
| | - Natalia Merkulyeva
- Pavlov Institute of Physiology, Russian Academy of Sciences (RAS), Saint-Petersburg, Russia
| | - Dmitry Shkarupa
- Saint-Petersburg State University Hospital, Saint-Petersburg, Russia
| | - Pavel Musienko
- Department of Neuroscience, Sirius University of Science and Technology, Sirius, Russia, 354340.
- Institute of Translational Biomedicine, Saint-Petersburg State University, Saint-Petersburg, Russia.
- Life Improvement by Future Technologies Center "LIFT", Moscow, Russia, 143025.
- Center for Biomedical Engineering, National University of Science and Technology "MISIS", Moscow, Russia, 119049.
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Kallaev S, Sadykov S, Pavlenko A, Ataev M, Majzner J, Orudzhev F, Giraev K, Alikhanov N. Exploring RF Magnetron Sputtering Growth Composite Thin Film BiFeO 3-Bi 2Fe 4O 9 on C-Plane Al 2O 3 Substrate. Materials (Basel) 2023; 16:6987. [PMID: 37959586 PMCID: PMC10647479 DOI: 10.3390/ma16216987] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/24/2023] [Revised: 10/28/2023] [Accepted: 10/30/2023] [Indexed: 11/15/2023]
Abstract
Nanocomposite films of BiFeO3-Bi2Fe4O9 were fabricated on a sapphire substrate Al2O3 using the method of gas discharge high-frequency cathodic sputtering of a ceramic target with a stoichiometric composition in an oxygen atmosphere. The results of the film analysis using X-ray structural analysis, Raman scattering, XPS, and atomic force microscopy are presented. The lattice parameters, surface topography, chemical composition of the films, concentration, and average sizes of the crystallites for each phase were determined. It was shown that the ratio of the BiFeO3 to Bi2Fe4O9 phases in the obtained film is approximately 1:2. The sizes of the crystallites range from 15 to 17 nm. The optical and magnetic properties of the nanocomposite layers were studied, and the band gap width and magnetization hysteresis characteristic of ferromagnetic behavior were observed. The band gap width was found to be 1.9 eV for the indirect and 2.6 eV for the direct interband transitions. The magnetic properties are characterized by a hysteresis loop resembling a "wasp-waist" shape, indicating the presence of magnetic anisotropy.
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Affiliation(s)
- Suleiman Kallaev
- Amirkhanov Institute of Physics, Dagestan Federal Research Center, Russian Academy of Sciences, St. M. Yaragskogo 94, 367003 Makhachkala, Russia
| | - Sadyk Sadykov
- Amirkhanov Institute of Physics, Dagestan Federal Research Center, Russian Academy of Sciences, St. M. Yaragskogo 94, 367003 Makhachkala, Russia
- Physical Department, Dagestan State University, St. M. Gadjieva 43-a, 367015 Makhachkala, Russia
| | - Anatoly Pavlenko
- Federal Research Centre “The Southern Scientific Centre”, Russian Academy of Sciences, 344006 Rostov-on-Don, Russia
| | - Mansur Ataev
- Amirkhanov Institute of Physics, Dagestan Federal Research Center, Russian Academy of Sciences, St. M. Yaragskogo 94, 367003 Makhachkala, Russia
| | - Jiří Majzner
- Department of Physics, Faculty of Electrical Engineering and Communication, Brno University of Technology, Technická 2848/8, 61600 Brno, Czech Republic
| | - Farid Orudzhev
- Amirkhanov Institute of Physics, Dagestan Federal Research Center, Russian Academy of Sciences, St. M. Yaragskogo 94, 367003 Makhachkala, Russia
| | - Kamal Giraev
- Physical Department, Dagestan State University, St. M. Gadjieva 43-a, 367015 Makhachkala, Russia
| | - Nariman Alikhanov
- Amirkhanov Institute of Physics, Dagestan Federal Research Center, Russian Academy of Sciences, St. M. Yaragskogo 94, 367003 Makhachkala, Russia
- Physical Department, Dagestan State University, St. M. Gadjieva 43-a, 367015 Makhachkala, Russia
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Orudzhev FF, Sobola DS, Ramazanov SM, Častková K, Selimov DA, Rabadanova AA, Shuaibov AO, Gulakhmedov RR, Abdurakhmanov MG, Giraev KM. Hydrogen Bond-Induced Activation of Photocatalytic and Piezophotocatalytic Properties in Calcium Nitrate Doped Electrospun PVDF Fibers. Polymers (Basel) 2023; 15:3252. [PMID: 37571146 PMCID: PMC10422511 DOI: 10.3390/polym15153252] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Revised: 07/26/2023] [Accepted: 07/28/2023] [Indexed: 08/13/2023] Open
Abstract
In this study, polyvinylidene fluoride (PVDF) fibers doped with hydrated calcium nitrate were prepared using electrospinning. The samples were analyzed using scanning electron microscopy (SEM), X-ray diffraction (XRD), optical spectroscopy, X-ray photoelectron spectroscopy (XPS), Fourier transform infrared (FTIR), Raman, and photoluminescence (PL) spectroscopy. The results are complementary and confirm the presence of chemical hydrogen bonding between the polymer and the dopant. Additionally, there was a significant increase in the proportion of the electroactive polar beta phase from 72 to 86%. It was shown that hydrogen bonds acted as a transport pathway for electron capture by the conjugated salt, leading to more than a three-fold quenching of photoluminescence. Furthermore, the optical bandgap of the composite material narrowed to the range of visible light energies. For the first time, it the addition of the salt reduced the energy of the PVDF exciton by a factor of 17.3, initiating photocatalytic activity. The calcium nitrate-doped PVDF exhibited high photocatalytic activity in the degradation of methylene blue (MB) under both UV and visible light (89 and 44%, respectively). The reaction rate increased by a factor of 2.4 under UV and 3.3 under visible light during piezophotocatalysis. The catalysis experiments proved the efficiency of the membrane design and mechanisms of catalysis are suggested. This study offers insight into the nature of chemical bonds in piezopolymer composites and potential opportunities for their use.
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Affiliation(s)
- F. F. Orudzhev
- Smart Materials Laboratory, Dagestan State University, St. M. Gadjieva 43-a, 367015 Makhachkala, Russia
| | - D. S. Sobola
- Central European Institute of Technology BUT, Purkyňova 656/123, 61200 Brno, Czech Republic
- Department of Physics, Faculty of Electrical Engineering and Communication, Brno University of Technology, Technická 2848/8, 61600 Brno, Czech Republic
| | - Sh. M. Ramazanov
- Amirkhanov Institute of Physics, Dagestan Federal Research Center, Russian Academy of Sciences, 367003 Makhachkala, Russia
| | - K. Častková
- Central European Institute of Technology BUT, Purkyňova 656/123, 61200 Brno, Czech Republic
| | - D. A. Selimov
- Smart Materials Laboratory, Dagestan State University, St. M. Gadjieva 43-a, 367015 Makhachkala, Russia
| | - A. A. Rabadanova
- Smart Materials Laboratory, Dagestan State University, St. M. Gadjieva 43-a, 367015 Makhachkala, Russia
| | - A. O. Shuaibov
- Smart Materials Laboratory, Dagestan State University, St. M. Gadjieva 43-a, 367015 Makhachkala, Russia
| | - R. R. Gulakhmedov
- Smart Materials Laboratory, Dagestan State University, St. M. Gadjieva 43-a, 367015 Makhachkala, Russia
| | - M. G. Abdurakhmanov
- Smart Materials Laboratory, Dagestan State University, St. M. Gadjieva 43-a, 367015 Makhachkala, Russia
| | - K. M. Giraev
- Smart Materials Laboratory, Dagestan State University, St. M. Gadjieva 43-a, 367015 Makhachkala, Russia
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Kladova OA, Tyugashev TE, Mikushina ES, Kuznetsov NA, Novopashina DS, Kuznetsova AA. The Activity of Natural Polymorphic Variants of Human DNA Polymerase β Having an Amino Acid Substitution in the Transferase Domain. Cells 2023; 12:cells12091300. [PMID: 37174699 PMCID: PMC10177036 DOI: 10.3390/cells12091300] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Revised: 04/26/2023] [Accepted: 04/29/2023] [Indexed: 05/15/2023] Open
Abstract
To maintain the integrity of the genome, there is a set of enzymatic systems, one of which is base excision repair (BER), which includes sequential action of DNA glycosylases, apurinic/apyrimidinic endonucleases, DNA polymerases, and DNA ligases. Normally, BER works efficiently, but the enzymes themselves (whose primary function is the recognition and removal of damaged bases) are subject to amino acid substitutions owing to natural single-nucleotide polymorphisms (SNPs). One of the enzymes in BER is DNA polymerase β (Polβ), whose function is to fill gaps in DNA with complementary dNMPs. It is known that many SNPs can cause an amino acid substitution in this enzyme and a significant decrease in the enzymatic activity. In this study, the activity of four natural variants of Polβ, containing substitution E154A, G189D, M236T, or R254I in the transferase domain, was analyzed using molecular dynamics simulations and pre-steady-state kinetic analyses. It was shown that all tested substitutions lead to a significant reduction in the ability to form a complex with DNA and with incoming dNTP. The G189D substitution also diminished Polβ catalytic activity. Thus, a decrease in the activity of studied mutant forms may be associated with an increased risk of damage to the genome.
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Affiliation(s)
- Olga A Kladova
- Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of Russian Academy of Sciences, Novosibirsk 630090, Russia
| | - Timofey E Tyugashev
- Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of Russian Academy of Sciences, Novosibirsk 630090, Russia
| | - Elena S Mikushina
- Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of Russian Academy of Sciences, Novosibirsk 630090, Russia
| | - Nikita A Kuznetsov
- Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of Russian Academy of Sciences, Novosibirsk 630090, Russia
- Department of Natural Sciences, Novosibirsk State University, Novosibirsk 630090, Russia
| | - Daria S Novopashina
- Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of Russian Academy of Sciences, Novosibirsk 630090, Russia
| | - Aleksandra A Kuznetsova
- Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of Russian Academy of Sciences, Novosibirsk 630090, Russia
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Artemov GN, Fedorova VS, Karagodin DA, Brusentsov II, Baricheva EM, Sharakhov IV, Gordeev MI, Sharakhova MV. New Cytogenetic Photomap and Molecular Diagnostics for the Cryptic Species of the Malaria Mosquitoes Anopheles messeae and Anopheles daciae from Eurasia. Insects 2021; 12:835. [PMID: 34564275 PMCID: PMC8465136 DOI: 10.3390/insects12090835] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/21/2021] [Revised: 09/03/2021] [Accepted: 09/13/2021] [Indexed: 11/17/2022]
Abstract
The Eurasian malaria vector Anopheles messeae is a widely spread and genetically diverse species. Five widespread polymorphic chromosomal inversions were found in natural populations of this mosquito. A cryptic species, Anopheles daciae, was differentiated from An. messeae by the presence of several nucleotide substitutions in the Internal Transcribed Spacer 2 (ITS2) region of ribosomal DNA. However, because of the absence of a high-quality reference cytogenetic map, the inversion polymorphisms in An. daciae and An. messeae remain poorly understood. Moreover, a recently determined heterogeneity in ITS2 in An. daciae questioned the accuracy of the previously used Restriction Fragment Length Polymorphism (RFLP) assay for species diagnostics. In this study, a standard-universal cytogenetic map was constructed based on orcein stained images of chromosomes from salivary glands for population studies of the chromosomal inversions that can be used for both An. messeae and An. daciae. In addition, a new ITS2-RFLP approach for species diagnostics was developed. Both methods were applied to characterize inversion polymorphism in populations of An. messeae and An. daciae from a single location in Western Siberia in Russia. The analysis demonstrates that cryptic species are remarkably different in their frequencies of chromosomal inversion variants. Our study supports previous observations that An. messeae has higher inversion polymorphism in all autosomes than the cryptic species An. daciae.
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Affiliation(s)
- Gleb N. Artemov
- Laboratory of Evolutionary Genomics of Insects, Institute of Cytology and Genetics, 630090 Novosibirsk, Russia; (G.N.A.); (D.A.K.); (I.I.B.); (I.V.S.)
- Department of Genetics and Cell Biology, Tomsk State University, 634050 Tomsk, Russia;
| | - Valentina S. Fedorova
- Department of Genetics and Cell Biology, Tomsk State University, 634050 Tomsk, Russia;
| | - Dmitriy A. Karagodin
- Laboratory of Evolutionary Genomics of Insects, Institute of Cytology and Genetics, 630090 Novosibirsk, Russia; (G.N.A.); (D.A.K.); (I.I.B.); (I.V.S.)
| | - Ilya I. Brusentsov
- Laboratory of Evolutionary Genomics of Insects, Institute of Cytology and Genetics, 630090 Novosibirsk, Russia; (G.N.A.); (D.A.K.); (I.I.B.); (I.V.S.)
| | - Elina M. Baricheva
- Laboratory of Cell Differentiation Mechanisms, Institute of Cytology and Genetics, 630090 Novosibirsk, Russia;
| | - Igor V. Sharakhov
- Laboratory of Evolutionary Genomics of Insects, Institute of Cytology and Genetics, 630090 Novosibirsk, Russia; (G.N.A.); (D.A.K.); (I.I.B.); (I.V.S.)
- Department of Genetics and Cell Biology, Tomsk State University, 634050 Tomsk, Russia;
- Department of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA
| | - Mikhail I. Gordeev
- Department of General Biology and Ecology, Moscow Region State University, 141014 Moscow, Russia;
| | - Maria V. Sharakhova
- Laboratory of Evolutionary Genomics of Insects, Institute of Cytology and Genetics, 630090 Novosibirsk, Russia; (G.N.A.); (D.A.K.); (I.I.B.); (I.V.S.)
- Department of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA
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Lee N, Khalenkov AM, Lugovtsev VY, Ireland DD, Samsonova AP, Bovin NV, Donnelly RP, Ilyushina NA. The use of plant lectins to regulate H1N1 influenza A virus receptor binding activity. PLoS One 2018; 13:e0195525. [PMID: 29630683 PMCID: PMC5891020 DOI: 10.1371/journal.pone.0195525] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2017] [Accepted: 03/23/2018] [Indexed: 01/02/2023] Open
Abstract
We applied an in vitro selection approach using two different plant lectins that bind to α2,3- or α2,6-linked sialic acids to determine which genetic changes of the A/California/04/09 (H1N1) virus alter hemagglutinin (HA) receptor binding toward α2,3- or α2,6-linked glycans. Consecutive passages of the A/California/04/09 virus with or without lectins in human lung epithelial Calu-3 cells led to development of three HA1 amino acid substitutions, N129D, G155E, and S183P, and one mutation in the neuraminidase (NA), G201E. The S183P mutation significantly increased binding to several α2,6 SA-linked glycans, including YDS, 6'SL(N), and 6-Su-6'SLN, compared to the wild-type virus (↑3.6-fold, P < 0.05). Two other HA1 mutations, N129D and G155E, were sufficient to significantly increase binding to α2,6-linked glycans, 6'SLN and 6-Su-6'SLN, compared to S183P (↑4.1-fold, P < 0.05). These HA1 mutations also increased binding affinity for 3'SLN glycan compared to the wild-type virus as measured by Biacore surface plasmon resonance method. In addition, the HA1 N129D and HA1 G155E substitutions were identified as antigenic mutations. Furthermore, the G201E mutation in NA reduced the NA enzyme activity (↓2.3-fold). These findings demonstrate that the A/California/04/09 (H1N1) virus can acquire enhanced receptor affinity for both α2,3- and α2,6-linked sialic receptors under lectin-induced selective pressure. Such changes in binding affinity are conferred by selection of beneficial HA1 mutations that affect receptor specificity, antigenicity, and/or functional compatibility with the NA protein.
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MESH Headings
- Amino Acid Substitution
- Animals
- Antigens, Viral/chemistry
- Antigens, Viral/genetics
- Antigens, Viral/metabolism
- Cell Line
- Dogs
- Hemagglutinin Glycoproteins, Influenza Virus/chemistry
- Hemagglutinin Glycoproteins, Influenza Virus/genetics
- Hemagglutinin Glycoproteins, Influenza Virus/metabolism
- Humans
- Influenza A Virus, H1N1 Subtype/genetics
- Influenza A Virus, H1N1 Subtype/pathogenicity
- Influenza A Virus, H1N1 Subtype/physiology
- Madin Darby Canine Kidney Cells
- Neuraminidase/chemistry
- Neuraminidase/genetics
- Neuraminidase/metabolism
- Plant Lectins/metabolism
- Polysaccharides/chemistry
- Polysaccharides/genetics
- Polysaccharides/metabolism
- Protein Binding
- Receptors, Virus/physiology
- Selection, Genetic
- Surface Plasmon Resonance
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Affiliation(s)
- Nicolette Lee
- Division of Biotechnology Research and Review II, Center for Drug Evaluation and Research, U.S. Food and Drug Administration, Silver Spring, Maryland, United States of America
| | - Alexey M. Khalenkov
- Division of Plasma Protein Therapeutics, Center for Biologics Evaluation and Research, U.S. Food and Drug Administration, Silver Spring, Maryland, United States of America
| | - Vladimir Y. Lugovtsev
- Division of Viral Products, Center for Biologics Evaluation and Research, U.S. Food and Drug Administration, Silver Spring, Maryland, United States of America
| | - Derek D. Ireland
- Division of Biotechnology Research and Review II, Center for Drug Evaluation and Research, U.S. Food and Drug Administration, Silver Spring, Maryland, United States of America
| | - Anastasia P. Samsonova
- Division of Viral Products, Center for Biologics Evaluation and Research, U.S. Food and Drug Administration, Silver Spring, Maryland, United States of America
| | - Nicolai V. Bovin
- Carbohydrate Chemistry Laboratory, Shemyakin Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, Russia
| | - Raymond P. Donnelly
- Division of Biotechnology Research and Review II, Center for Drug Evaluation and Research, U.S. Food and Drug Administration, Silver Spring, Maryland, United States of America
- * E-mail: (NAI); (RPD)
| | - Natalia A. Ilyushina
- Division of Biotechnology Research and Review II, Center for Drug Evaluation and Research, U.S. Food and Drug Administration, Silver Spring, Maryland, United States of America
- * E-mail: (NAI); (RPD)
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