High-throughput
ChIPmentation: freely scalable, single day ChIPseq data generation from very low cell-numbers.
BMC Genomics 2019;
20:59. [PMID:
30658577 PMCID:
PMC6339279 DOI:
10.1186/s12864-018-5299-0]
[Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2018] [Accepted: 11/21/2018] [Indexed: 01/07/2023] Open
Abstract
Background
Chromatin immunoprecipitation coupled to sequencing (ChIP-seq) is widely used to map histone modifications and transcription factor binding on a genome-wide level.
Results
We present high-throughput ChIPmentation (HT-ChIPmentation) that eliminates the need for DNA purification prior to library amplification and reduces reverse-crosslinking time from hours to minutes.
Conclusions
The resulting workflow is easily established, extremely rapid, and compatible with requirements for very low numbers of FACS sorted cells, high-throughput applications and single day data generation.
Electronic supplementary material
The online version of this article (10.1186/s12864-018-5299-0) contains supplementary material, which is available to authorized users.
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