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Bai H, Collins LB, André MR, Breitschwerdt EB, Islam Williams T. Bottom-Up Proteomics Workflow for Studying Multi-organism Systems. Methods Mol Biol 2025;2884:119-141. [PMID: 39716001 DOI: 10.1007/978-1-0716-4298-6_9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2024]
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Sharma V, Singh SB, Bandyopadhyay S, Sikka K, Kakkar A, Hariprasad G. Label-based comparative proteomics of oral mucosal tissue to understand progression of precancerous lesions to oral squamous cell carcinoma. Biochem Biophys Rep 2024;40:101842. [PMID: 39483176 PMCID: PMC11525462 DOI: 10.1016/j.bbrep.2024.101842] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2024] [Revised: 10/07/2024] [Accepted: 10/07/2024] [Indexed: 11/03/2024]  Open
3
Rajan MV, Sharma V, Upadhyay N, Murali A, Bandyopadhyay S, Hariprasad G. Serum proteomics for the identification of biomarkers to flag predilection of COVID19 patients to various organ morbidities. Clin Proteomics 2024;21:61. [PMID: 39487396 PMCID: PMC11531188 DOI: 10.1186/s12014-024-09512-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2024] [Accepted: 10/23/2024] [Indexed: 11/04/2024]  Open
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He Y, Jin H, Ju F. Toxicological effects and underlying mechanisms of chlorination-derived metformin byproducts in Escherichia coli. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023;905:167281. [PMID: 37758144 DOI: 10.1016/j.scitotenv.2023.167281] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2023] [Revised: 09/14/2023] [Accepted: 09/20/2023] [Indexed: 10/03/2023]
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Wang Z, Cao L, Wang J, Wang H, Ma T, Yin Z, Cai W, Liu L, Liu T, Ma H, Zhang Y, Shen Z, Zheng H. A novel predictive model of microvascular invasion in hepatocellular carcinoma based on differential protein expression. BMC Gastroenterol 2023;23:89. [PMID: 36973651 PMCID: PMC10041792 DOI: 10.1186/s12876-023-02729-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/09/2022] [Accepted: 03/13/2023] [Indexed: 03/29/2023]  Open
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Araújo MJ, Sousa ML, Fonseca E, Felpeto AB, Martins JC, Vázquez M, Mallo N, Rodriguez-Lorenzo L, Quarato M, Pinheiro I, Turkina MV, López-Mayán JJ, Peña-Vázquez E, Barciela-Alonso MC, Spuch-Calvar M, Oliveira M, Bermejo-Barrera P, Cabaleiro S, Espiña B, Vasconcelos V, Campos A. Proteomics reveals multiple effects of titanium dioxide and silver nanoparticles in the metabolism of turbot, Scophthalmus maximus. CHEMOSPHERE 2022;308:136110. [PMID: 36007739 DOI: 10.1016/j.chemosphere.2022.136110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2022] [Revised: 08/01/2022] [Accepted: 08/16/2022] [Indexed: 06/15/2023]
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ITRAQ-based quantitative proteomic analysis of Fusarium moniliforme (Fusarium verticillioides) in response to Phloridzin inducers. Proteome Sci 2021;19:2. [PMID: 33446211 PMCID: PMC7807804 DOI: 10.1186/s12953-021-00170-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2020] [Accepted: 01/02/2021] [Indexed: 11/13/2022]  Open
8
Voruganti S, Kline JT, Balch MJ, Rogers J, Matts RL, Hartson SD. Proteomic Profiling of Hsp90 Inhibitors. Methods Mol Biol 2018;1709:139-162. [PMID: 29177657 DOI: 10.1007/978-1-4939-7477-1_11] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/12/2023]
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Wang Z, Zhou Q, Li Y, Qiao L, Pang Q, Huang B. iTRAQ-based quantitative proteomic analysis of conidia and mycelium in the filamentous fungus Metarhizium robertsii. Fungal Biol 2018;122:651-658. [PMID: 29880200 DOI: 10.1016/j.funbio.2018.03.010] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2017] [Revised: 03/21/2018] [Accepted: 03/22/2018] [Indexed: 01/10/2023]
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Choksawangkarn W, Graham LM, Burke M, Lee SB, Ostrand-Rosenberg S, Fenselau C, Edwards NJ. Peptide-based systems analysis of inflammation induced myeloid-derived suppressor cells reveals diverse signaling pathways. Proteomics 2017;16:1881-8. [PMID: 27193397 DOI: 10.1002/pmic.201500102] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2015] [Revised: 05/03/2016] [Accepted: 05/16/2016] [Indexed: 12/19/2022]
11
Wang H, Liu W, Cai Y, Ma L, Ma C, Luo A, Huang Y. Glutaminase 1 is a potential biomarker for chronic post-surgical pain in the rat dorsal spinal cord using differential proteomics. Amino Acids 2015;48:337-48. [PMID: 26427714 DOI: 10.1007/s00726-015-2085-z] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2015] [Accepted: 08/24/2015] [Indexed: 12/30/2022]
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Identification of Differential Protein Expression in Hepatocellular Carcinoma Induced Wistar Albino Rats by 2D Electrophoresis and MALDI-TOF-MS Analysis. Indian J Clin Biochem 2015;31:194-202. [PMID: 27069327 DOI: 10.1007/s12291-015-0510-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2015] [Accepted: 05/13/2015] [Indexed: 12/12/2022]
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Rabilloud T, Lescuyer P. The proteomic to biology inference, a frequently overlooked concern in the interpretation of proteomic data: a plea for functional validation. Proteomics 2014;14:157-61. [PMID: 24273051 DOI: 10.1002/pmic.201300413] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2013] [Revised: 11/11/2013] [Accepted: 11/13/2013] [Indexed: 11/08/2022]
14
Herrmann AG, Searcy JL, Le Bihan T, McCulloch J, Deighton RF. Total variance should drive data handling strategies in third generation proteomic studies. Proteomics 2013;13:3251-5. [PMID: 24123801 DOI: 10.1002/pmic.201300056] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2013] [Revised: 08/02/2013] [Accepted: 08/21/2013] [Indexed: 12/26/2022]
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