Body traits variation of a reef building polychaete across a latitudinal gradient

Body size is considered the most important trait in ecology, and as such, helps to understand the species-environment interactions. We explored the relationship between body traits and environmental variables along a gradient range using the polychaete Phragmatopoma caudata, with well-defined and diversified morphological structures. Measurements of five traits (body length, opercular crown, branchiae, tentacles and building organ sizes) were taken at nine sites along the Southwestern Atlantic coast and their relationships to temperature, salinity, tidal range, waves height, and dissolved oxygen were assessed. Our results demonstrate that traits were influenced by the environmental gradient and temperature was the main factor that drives this variation in body traits, while the other variables showed a minor influence on this. The approach showed patterns of variation of body traits in a macroscale context, increasing the understanding of its relationships with environmental variables and eventual shifts in the distribution in the future climate scenarios.

Functional similarity, despite taxonomical divergence in the millipede gut microbiota, points to a common trophic strategy

BACKGROUND

Many arthropods rely on their gut microbiome to digest plant material, which is often low in nitrogen but high in complex polysaccharides. Detritivores, such as millipedes, live on a particularly poor diet, but the identity and nutritional contribution of their microbiome are largely unknown. In this study, the hindgut microbiota of the tropical millipede Epibolus pulchripes (large, methane emitting) and the temperate millipede Glomeris connexa (small, non-methane emitting), fed on an identical diet, were studied using comparative metagenomics and metatranscriptomics.

RESULTS

The results showed that the microbial load in E. pulchripes is much higher and more diverse than in G. connexa. The microbial communities of the two species differed significantly, with Bacteroidota dominating the hindguts of E. pulchripes and Proteobacteria (Pseudomonadota) in G. connexa. Despite equal sequencing effort, de novo assembly and binning recovered 282 metagenome-assembled genomes (MAGs) from E. pulchripes and 33 from G. connexa, including 90 novel bacterial taxa (81 in E. pulchripes and 9 in G. connexa). However, despite this taxonomic divergence, most of the functions, including carbohydrate hydrolysis, sulfate reduction, and nitrogen cycling, were common to the two species. Members of the Bacteroidota (Bacteroidetes) were the primary agents of complex carbon degradation in E. pulchripes, while members of Proteobacteria dominated in G. connexa. Members of Desulfobacterota were the potential sulfate-reducing bacteria in E. pulchripes. The capacity for dissimilatory nitrate reduction was found in Actinobacteriota (E. pulchripes) and Proteobacteria (both species), but only Proteobacteria possessed the capacity for denitrification (both species). In contrast, some functions were only found in E. pulchripes. These include reductive acetogenesis, found in members of Desulfobacterota and Firmicutes (Bacillota) in E. pulchripes. Also, diazotrophs were only found in E. pulchripes, with a few members of the Firmicutes and Proteobacteria expressing the nifH gene. Interestingly, fungal-cell-wall-degrading glycoside hydrolases (GHs) were among the most abundant carbohydrate-active enzymes (CAZymes) expressed in both millipede species, suggesting that fungal biomass plays an important role in the millipede diet.

CONCLUSIONS

Overall, these results provide detailed insights into the genomic capabilities of the microbial community in the hindgut of millipedes and shed light on the ecophysiology of these essential detritivores. Video Abstract.

Gut microbial communities and their potential roles in cellulose digestion and thermal adaptation of earthworms

Adaptations to temperature and food resources, which can be affected by gut microbiota, are two main adaptive strategies allowing soil fauna to survive in their habitats, especially for cold-blooded animals. Earthworms are often referred to as ecosystem engineers because they make up the biggest component of the animal biomass found in the soil. They are considered as an important indicator in the triangle of soil quality, health and functions. However, the roles of gut microbiota in the environmental adaptation of earthworms at a large scale remain obscure. We explored the gut bacterial communities and their functions in the environmental adaptation of two widespread earthworm species (Eisenia nordenskioldi Eisen and Drawida ghilarovi Gates) in Northeast China (1661 km). Based on our findings, the alpha diversity of gut bacterial communities decreased with the increase of latitude, and the gut bacterial community composition was shaped by both mean annual temperature (MAT) and cellulose. Actinobacteria, Proteobacteria, Firmicutes, and Planctomycetes, recognized as the predominant cellulose degraders, were keystone taxa driving gut bacterial interactions. Actinobacteria, Firmicutes, and Planctomycetes were influenced by MAT and cellulose, and had higher contributions to gut total cellulase activity. The optimal temperature for total cellulase in the gut of E. nordenskioldi (25-30 °C) was lower than that of D ghilarovi (40 °C). The gut microbiota-deleted earthworms had the lowest cellulose degradation rate (1.07 %). The cellulose was degraded faster by gut bacteria from the host they were derived, indicating the presence of home field advantage of cellulose decomposition. This study provides a foundation for understanding the biotic strategies adopted by earthworms when they enter a new habitat, with gut microbiota being central to food digestion and environmental adaptability.

Functional traits of polychaetes change between different types of Posidonia oceanica habitats

Meadows of Posidonia oceanica harbor rich biodiversity and ecosystem functions, yet Biological Traits Analysis on the resident benthic communities are lacking. This study aims to provide insight on the functional diversity of polychaetes communities, a dominant benthic group, between the different habitat types of P. oceanica (plain meadow, strips/patches and dead matte), as well as pilot indicators of habitat modification. The results showed how specific traits relate to the different habitat types. Plain meadow was different to strips/patches and dead matte in functional composition, diversity and thus, the ecosystem functions involved. However, an overlap was observed in functional composition between dead matte and living P. oceanica, due to the remaining matte structure. This highlights the importance of the former on ecosystem functioning and the serious consequences of its current exclusion from conservational legislation. In addition, the classification of species to ecosystem engineering types showed interesting potential as an indicator.

Cryoconite - From minerals and organic matter to bioengineered sediments on glacier's surfaces

Cryoconite is a mixture of mineral and organic material covering glacial ice, playing important roles in biogeochemical cycles and lowering the albedo of a glacier surface. Understanding the differences in structure of cryoconite across the globe can be important in recognizing past and future changes in supraglacial environments and ice-organisms-minerals interactions. Despite the worldwide distribution and over a century of studies, the basic characteristics of cryoconite, including its forms and geochemistry, remain poorly studied. The major purpose of our study is the presentation and description of morphological diversity, chemical and photoautotrophs composition, and organic matter content of cryoconite sampled from 33 polar and mountain glaciers around the globe. Observations revealed that cryoconite is represented by various morphologies including loose and granular forms. Granular cryoconite includes smooth, rounded, or irregularly shaped forms; with some having their surfaces covered by cyanobacteria filaments. The occurrence of granules increased with the organic matter content in cryoconite. Moreover, a major driver of cryoconite colouring was the concentration of organic matter and its interplay with minerals. The structure of cyanobacteria and algae communities in cryoconite differs between glaciers, but representatives of cyanobacteria families Pseudanabaenaceae and Phormidiaceae, and algae families Mesotaeniaceae and Ulotrichaceae were the most common. The most of detected cyanobacterial taxa are known to produce polymeric substances (EPS) that may cement granules. Organic matter content in cryoconite varied between glaciers, ranging from 1% to 38%. The geochemistry of all the investigated samples reflected local sediment sources, except of highly concentrated Pb and Hg in cryoconite collected from European glaciers near industrialized regions, corroborating cryoconite as element-specific collector and potential environmental indicator of anthropogenic activity. Our work supports a notion that cryoconite may be more than just simple sediment and instead exhibits complex structure with relevance for biodiversity and the functioning of glacial ecosystems.

Epibiont assemblages on limpet shells: Biodiversity drivers in intertidal rocky shores

Limpet shells can harbour a high diversity of species. Individuals of four limpet species (Patella depressa, Patella ulyssiponensis, Patella vulgata and Siphonaria pectinata) were collected monthly during one year in southern Portugal. Epibiont organisms were identified, counted and the percentage cover of facilitator taxa was also recorded. A total of 86 taxa were identified with abundance reaching 674 epibionts on a single basibiont shell. P. ulyssiponensis showed the highest epibiont species diversity and richness while P. depressa and P. vulgata showed similar diversity and richness. P. depressa had a more even epibiotic community mainly due to higher densities of Chthamalus sp. Overall, basibiont species was the key factor determining the epibiotic community, followed by month/season and erect algae. The presence of erect algae potentiated the epibionts diversity on limpet shells, whereas the occurrence of barnacles tended to decrease it and the presence of crustose algae had no significant effect on epibionts diversity. These findings shed further light on the biological and ecological complex relationships among keystone species inhabiting intertidal rocky shores.

The importance of direct and indirect trophic interactions in determining the presence of a locally rare day-flying moth

Ecosystem engineers affect other organisms by creating, maintaining or modifying habitats, potentially supporting species of conservation concern. However, it is important to consider these interactions alongside non-engineering trophic pathways. We investigated the relative importance of trophic and non-trophic effects of an ecosystem engineer, red deer, on a locally rare moth, the transparent burnet (Zygaena purpuralis). This species requires specific microhabitat conditions, including the foodplant, thyme, and bare soil for egg-laying. The relative importance of grazing (i.e., trophic effect of modifying microhabitat) and trampling (i.e., non-trophic effect of exposing bare soil) by red deer on transparent burnet abundance is unknown. We tested for these effects using a novel method of placing pheromone-baited funnel traps in the field. Imago abundance throughout the flight season was related to plant composition, diversity and structure at various scales around each trap. Indirect effects of red deer activity were accounted for by testing red deer pellet and trail presence against imago abundance. Imago abundance was positively associated with thyme and plant diversity, whilst negatively associated with velvet grass and heather species cover. The presence of red deer pellets and trails were positively associated with imago abundance. The use of these sites by red deer aids the transparent burnet population via appropriate levels of grazing and the provision of a key habitat condition, bare soil, in the form of deer trails. This study shows that understanding how both trophic and non-trophic interactions affect the abundance of a species provides valuable insights regarding conservation objectives.

Invasive species in the Anthropocene: Help or hindrance?

Under predicted climate change scenarios many parts of the world will be hotter. Higher temperature extremes present significant physiological challenges to ectothermic freshwater species that cannot regulate body temperature. Willows (Salix spp.) are highly invasive deciduous northern hemisphere shrubs and trees that have colonised riparian zones of southern hemisphere streams. Non-native willows are criticised for their high consumption of water and their capacity to form dense monostands along the margins and within waterways that limit light to streams in summer, alter the timing and quality of allochthonous inputs and modify ecosystem function. As such, governments invest heavily in the removal of willows from streams in order to preserve ecosystem integrity. Although detrimental effects of non-native willows are well documented, little attention has been focussed on consideration of potential ecosystem services that non-native willow infestation may provide under predicted climate warming. Here, we use a case study to illustrate that shading by non-native willows can provide thermal refugia for temperature sensitive endemic taxa and we provide a holistic approach to non-native willow removal that may provide benefits to aquatic species amid changing climate. We present a simple decision matrix for prioritising willow removal activities that may be applied to other invasive species and we discuss traditional views of invasive species management and river restoration and their relevance in a rapidly warming world. The concepts we discuss are of immediate relevance to environmental managers challenged with maintaining and restoring ecosystems that are rapidly changing in structure and function in response to climate warming.

Habitat modification by Ascophyllum canopy negatively impacts macrofaunal communities on soft-sediment shores

Canopy-forming macroalgae are known to act as ecosystem engineers, altering the physical parameters of the local environment, and as a result, driving changes in local biodiversity. Although a large body of evidence exists regarding macroalgal canopies on intertidal rocky shores, little is known regarding attached perennial species in soft sediment environments. The aim of this study was to assess whether the presence of an Ascophyllum nodosum canopy altered physical parameters, leading to the formation of different environmental conditions in the areas around the canopy and whether this led to changes in the local community. Sediment cores were taken in canopy-present and canopy-absent treatments at four sites over four sampling periods covering winter (November and January) through to spring (March and May) to assess modification of seven physical parameters: particle size, sand/silt/clay content, chlorophyll a, organic carbon, pore water content and temperature, as well as for macrofaunal diversity. Results revealed significant differences between treatments for all variables with the exception of clay content. Areas below the canopy were dominated by a high abundance of opportunistic species indicating a more disturbed environment, with increased levels of organic enrichment, anoxia and scouring found to be the principal sources of physical disturbance. In conclusion, differences in abiotic parameters between canopy and non-canopy areas in soft-sediment environments were driven both directly and indirectly by the presence of the algal canopy. This facilitated an alternative community composition that enhanced biodiversity within algal-sediment shores.

Species-specific plastic accumulation in the sediment and canopy of coastal vegetated habitats

Plastic waste has become ubiquitous in ecosystems worldwide. Few, recent studies report evidence of coastal vegetated habitats acting as sink for plastics, yet assessments have been completed either for macro or microplastics and focussing on just one type of vegetated habitat. Here, we investigated the role of marine coastal vegetated habitats as sinks for macro (≥5 mm) and microplastics (<5 mm) through a comprehensive, multi-habitat approach. We assessed the occurrence, abundance and physical properties of macro and microplastics in the canopy and superficial sediment of two intertidal (seagrass Zostera noltei, saltmarsh Sporobolus maritimus) and two subtidal (mixed seagrass meadows of Cymodocea nodosa and Zostera marina, rhizophytic macroalga Caulerpa prolifera) habitats in the Ria Formosa lagoon (Portugal). Our results showed that coastal vegetated habitats trapped macro and microplastics in the sediment at variable degrees (1.3-17.3 macroplastics 100 m^-2, and 18.2-35.2 microplastics kg^-1). Macroplastics accumulated in all vegetated habitat but not in nearby unvegetated areas, yet only S. maritimus habitat presented a significant trapping effect. Microplastics occurred in the sediment of all vegetated and unvegetated areas with similar abundances and high variability. Microplastics, all of type fibre, were recorded on all canopies except for S. maritimus. Overall, the trapping capacity of microplastics in the sediment and on the canopy was higher for subtidal than for intertidal vegetated habitats. We conclude that generalizations in the trapping effect of coastal vegetated areas should be done with caution, since it may be highly variable and may depend on the plastic size, habitat and tidal position. Since these habitats support a high biodiversity, they should be included in assessments of plastic debris accumulation and impacts in coastal areas. Further research, including experimental studies, is needed to shed more light on the role of coastal vegetated habitats as plastic sinks.

Life on the edge: Compensatory growth and feeding rates at environmental extremes mediates potential ecosystem engineering by an invasive bivalve

Invasive non-native species (INNS) with marine or brackish origins have become increasingly common occupying freshwater habitats. The transition of INNS from marine or brackish water into physiologically stressful freshwater environments may be facilitated by compensatory growth and elevated feeding rates. In this study, we investigate the capacity of the Gulf wedge clam (Rangia cuneata), a brackish NNS that is spreading quickly across European waterways, to survive in freshwater conditions and consider its resultant impacts as an ecosystem engineer. To investigate the performance of R. cuneata under freshwater conditions, we compared the population structure, the physiological condition, and the growth of R. cuneata collected from its distributional limits in Great Britain. Feeding rate of R. cuneata was quantified by conducting a reciprocal transfer experiment with a two-way factorial design on individuals obtained from the freshwater and saline extremes. R. cuneata density was almost 10-fold higher at its most saline distributional limit (213 individual m^-2, 3.1‰) compared to its most freshwater limit (22 individuals m^-2, 1.2‰). The impaired physiological condition (18.7% lower relative soft tissue mass and 26.4% lower shell mass) and the lack of juvenile individuals also suggests that the R. cuneata inhabiting the freshwater extreme may not be able to maintain a persistent population over the long term. Although R. cuneata at its freshwater extreme were under stress, the per capita impacts caused by these individuals were not weakened at the suboptimal conditions, evidenced by their elevated growth and over four times as high relative clearance rate (0.28 L^-1 g^-1 h^-1) compared to those from the saline limit (0.06 L^-1 g^-1 h^-1). This study demonstrates that under suboptimal conditions, the physiological responses of INNS may result in elevated per capita effects which may lead to unexpected or under-estimated impacts on recipient ecosystems.

Blender interstitial volume: A novel virtual measurement of structural complexity applicable to marine benthic habitats

Blender interstitial volume is a novel method that utilizes 3D modeling techniques to accurately and efficiently quantify the volume of interstitial gaps in marine benthic habitats, as well as the space provided by substrate rugosity. This method builds upon the analog methods routinely used on rocky shores and intertidal habitats, including those that measure rugosity, topography, fractals and volume. The method provides a direct Euclidean measurement and uniquely allows retrospective analysis if historical data on species composition are available. Blender interstitial volume allows users to quickly build and measure a large number of samples at no extra cost.

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The program for Blender is free and opensource, and requires no extra equipment.

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Once 3D models of species are made, the entire method takes less than ten minutes to complete.

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Blender interstitial volume is as accurate as Fractal analysis in determining structural complexity on rocky shores, but is more consistent and precise, and better at discerning differences.

Mediterranean Bioconstructions Along the Italian Coast

Marine bioconstructions are biodiversity-rich, three-dimensional biogenic structures, regulating key ecological functions of benthic ecosystems worldwide. Tropical coral reefs are outstanding for their beauty, diversity and complexity, but analogous types of bioconstructions are also present in temperate seas. The main bioconstructions in the Mediterranean Sea are represented by coralligenous formations, vermetid reefs, deep-sea cold-water corals, Lithophyllum byssoides trottoirs, coral banks formed by the shallow-water corals Cladocora caespitosa or Astroides calycularis, and sabellariid or serpulid worm reefs. Bioconstructions change the morphological and chemicophysical features of primary substrates and create new habitats for a large variety of organisms, playing pivotal roles in ecosystem functioning. In spite of their importance, Mediterranean bioconstructions have not received the same attention that tropical coral reefs have, and the knowledge of their biology, ecology and distribution is still fragmentary. All existing data about the spatial distribution of Italian bioconstructions have been collected, together with information about their growth patterns, dynamics and connectivity. The degradation of these habitats as a consequence of anthropogenic pressures (pollution, organic enrichment, fishery, coastal development, direct physical disturbance), climate change and the spread of invasive species was also investigated. The study of bioconstructions requires a holistic approach leading to a better understanding of their ecology and the application of more insightful management and conservation measures at basin scale, within ecologically coherent units based on connectivity: the cells of ecosystem functioning.

Non-indigenous predators threaten ecosystem engineers: Interactive effects of green crab and oyster size on American oyster mortality

Non-indigenous green crabs (Carcinus maenas) are emerging as important predators of autogenic engineers like American oysters (Crassostrea virginica) throughout the eastern seaboard of Canada and the United States. To document the spreading distribution of green crabs, we carried out surveys in seven sites of Prince Edward Island during three fall seasons. To assess the potential impact of green crabs on oyster mortality in relation to predator and prey size, we conducted multiple predator-prey manipulations in the field and laboratory. The surveys confirmed an ongoing green crab spread into new productive oyster habitats while rapidly increasing in numbers in areas where crabs had established already. The experiments measured mortality rates on four sizes of oysters exposed to three sizes of crab, and lasted 3-5 days. The outcomes of experiments conducted in Vexar^® bags, laboratory tanks and field cages were consistent and were heavily dependent on both crab size and oyster size: while little predation occurred on large oysters, large and medium green crabs preyed heavily on small sizes. Oysters reached a refuge within the 35-55 mm shell length range; below that range, oysters suffered high mortality due to green crab predation and thus require management measures to enhance their survival. These results are most directly applicable to aquaculture operations and restoration initiatives but have implications for oyster sustainability.

Zebra mussel beds: an effective feeding ground for Ponto-Caspian gobies or suitable shelter for their prey?

Aggregations of the Ponto-Caspian invasive zebra mussel (Dreissena polymorpha) constitute a suitable habitat for macroinvertebrates, considerably increasing their abundance and providing effective antipredator protection. Thus, the overall effect of a mussel bed on particular predator species may vary from positive to negative, depending on both prey density increase and predator ability to prey in a structurally complex habitat. Alien Ponto-Caspian goby fish are likely to be facilitated when introduced into new areas by zebra mussels, provided that they are capable of utilizing mussel beds as habitat and feeding grounds. We ran laboratory experiments to find which prey (chironomid larvae) densities (from ca. 500 to 2,000 individuals m⁻²) in a mussel bed make it a more beneficial feeding ground for the racer goby Babka gymnotrachelus (RG) and western tubenose goby Proterorhinus semilunaris (WTG) compared to sandy and stone substrata (containing the basic prey density of 500 ind. m⁻²). Moreover, we checked how food availability affects habitat selection by fish. Mussel beds became more suitable for fish than alternative mineral substrata when food abundance was at least two times higher (1,000 vs. 500 ind. m⁻²), regardless of fish size and species. WTG was associated with mussel beds regardless of its size and prey density, whereas RG switched to this habitat when it became a better feeding ground than alternative substrata. Larger RG exhibited a stronger affinity for mussels than small individuals. WTG fed more efficiently from a mussel bed at high food abundances than RG. A literature review has shown that increasing chironomid density, which in our study was sufficient to make a mussel habitat an attractive feeding ground for the gobies, is commonly observed in mussel beds in the field. Therefore, we conclude that zebra mussels may positively affect the alien goby species and are likely to facilitate their establishment in novel areas, contributing to an invasional meltdown in the Ponto-Caspian invasive community.

Trophic versus structural effects of a marine foundation species, giant kelp (Macrocystis pyrifera)

Foundation species create milieus in which ecosystems evolve, altering species abundances and distribution often to a dramatic degree. Although much descriptive work supports their importance, there remains little definitive information on the mechanisms by which foundation species alter their environment. These mechanisms fall into two basic categories: provision of food or other materials, and modification of the physical environment. Here, we manipulated the abundance of a marine foundation species, the giant kelp Macrocystis pyrifera, in 40 × 40-m plots at Mohawk Reef off Santa Barbara, California and found that its biomass had a strong positive effect on the abundance of bottom-dwelling sessile invertebrates. We examined the carbon (C) stable isotope values of seven species of sessile invertebrates in the treatment plots to test the hypothesis that this positive effect resulted from a nutritional supplement of small suspended particles of kelp detritus, as many studies have posited. We found no evidence from stable isotope analyses to support the hypothesis that kelp detritus is an important food source for sessile suspension-feeding invertebrates. The isotope composition of invertebrates varied with species and season, but was not affected by kelp biomass, with the exception of two species: the tunicate Styela montereyensis, which exhibited a slight enrichment in C stable isotope composition with increasing kelp biomass, and the hydroid Aglaophenia sp., which showed the opposite effect. These results suggest that modification of the physical habitat, rather than nutritional subsidy by kelp detritus, likely accounts for increased abundance of sessile invertebrates within giant kelp forests.

Stable isotope 15N and 13C labelling of different functional groups of earthworms and their casts: A tool for studying trophic links

Earthworms (Oligochaeta: Lumbricidae) have substantial effects on the structure and fertility of soils with consequences for the diversity of plant communities and associated ecosystem functions. However, we still lack a clear understanding of the functional role earthworms play in terrestrial ecosystems, partly because easy-to-use methods to quantify their activities are missing. In this study, we tested whether earthworms and their casts can be dual-labelled with 15N and 13C stable isotopes by cultivating them in soil substrate amended with 15N ammonium nitrate and 13C-glucose. Additionally, we also wanted to know whether (i) earthworms from different functional groups (soil-feeders vs. litter-feeders) and their casts would differ in their incorporation of stable isotopes, (ii) if enrichment levels are higher if the same amount of isotopes is applied in one dose or in staggered doses, and (iii) if isotopic enrichment in casts changes when they are stored in a conditioning cabinet or in a pot filled with soil placed in a greenhouse. Our findings show the feasibility of dual-labelling tissues and casts of both litter-feeding (Lumbricus terrestris) and soil-feeding (Aporrectodea caliginosa) earthworms using the same method. The advantage of this method is that earthworms and their casts can be labelled under realistic conditions by cultivating them for only four days in soil that received a one-time addition of commercially available stable isotopes instead of offering labelled plant material. In earthworms, the isotopic enrichment remained at a stable level for at least 21 days; labelled casts could be stored for at least 105 days without significantly decreasing their isotopic signals. This simple and efficient method opens new avenues for studying the role of these important ecosystem engineers in nutrient cycling and their functional relationships with other organisms.