High-resolution analysis of upper Miocene lake deposits: Evidence for the influence of Gleissberg-band solar forcing

A high-resolution multi-proxy analysis was conducted on a 1.5-m-long core of Tortonian age (~ 10.5 Ma; Late Miocene) from Austria (Europe). The lake sediments were studied with a 1-cm resolution to detect all small-scale variations based on palynomorphs (pollen and dinoflagellate cysts), ostracod abundance, geochemistry (carbon and sulfur) and geophysics (magnetic susceptibility and natural gamma radiation). Based on an already established age model for a longer interval of the same core, this sequence can be limited to approx. two millennia of Late Miocene time with a resolution of ~ 13.7 years per sample. The previous study documented the presence of solar forcing, which was verified within various proxies on this 1.5-m core by a combination of REDFIT spectra and Gaussian filters. Significant repetitive signals ranged in two discrete intervals corresponding roughly to 55-82 and 110-123 years, fitting well within the lower and upper Gleissberg cycle ranges.Based on these results, the environmental changes along the 2000-year Late Miocene sequence are discussed. No major ecological turnovers are expected in this very short interval. Nonetheless, even within this brief time span, dinoflagellates document rapid changes between oligotrophic and eutrophic conditions, which are frequently coupled with lake stratification and dysoxic bottom waters. These phases prevented ostracods and molluscs from settling and promoted the activity of sulfur bacteria. The pollen record indicates rather stable wetland vegetation with a forested hinterland. Shifts in the pollen spectra can be mainly attributed to variations in transport mechanisms. These are represented by a few phases of fluvial input but mainly by changes in wind intensity and probably also wind direction. Such influence is most likely caused by solar cycles, leading to a change in source area for the input into the lake.Furthermore, these solar-induced variations seem to be modulated by longer solar cycles. The filtered data display comparable patterns and modulations, which seem to be forced by the 1000-year and 1500-year cycles. The 1000-year cycle modulated especially the lake surface proxies, whereas the 1500-year cycle is mainly reflected in hinterland proxies, indicating strong influence on transport mechanisms.

Focused classifications and refinements in high-resolution single particle cryo-EM analysis

Recent advances in cryo electron microscopy (cryo-EM) and image processing provide new opportunities to analyse drug targets at high resolution. However, structural heterogeneity limits resolution in many practical cases, hence restricting the level at which structural details can be analysed and drug design be performed. As structural disorder is not spread throughout the entire structure of a given macromolecular complex but instead is found in certain regions that move with respect to others and covering molecular scales from domain conformational changes up to the level of side chain conformations in ligand binding pockets, it is possible to focus the attention on those regions and the associated relative movements. Here we show how the usage of focused classifications and refinements provide insights into global conformational arrangements, exemplified on the human ribosome and on the cannabinoid G protein coupled receptor (GPCR), and how they can improve the local map resolution from an essentially disordered region to the 3-4 Å and finally to the 2 Å resolution range. A systematic analysis with variable spherical masks during focused refinement is presented showing that the choice of an optimal mask size helps refining to high resolution. This study covers several practical approaches on 4 examples illustrating how important mask size & shape and including neighbouring structural elements are for a focused analysis of a macromolecular complex. Such methods will be crucial for cryo-EM structure-based drug design of various medical targets and are applicable to single particle cryo-EM and electron tomography data.