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Kloepper LN, Linnenschmidt M, Blowers Z, Branstetter B, Ralston J, Simmons JA. Estimating colony sizes of emerging bats using acoustic recordings. ROYAL SOCIETY OPEN SCIENCE 2016; 3:160022. [PMID: 27069667 PMCID: PMC4821278 DOI: 10.1098/rsos.160022] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/12/2016] [Accepted: 02/11/2016] [Indexed: 06/05/2023]
Abstract
The decline of bats demands more widespread monitoring of populations for conservation and management. Current censusing methods are either prone to bias or require costly equipment. Here, we report a new method using passive acoustics to determine bat count census from overall acoustic amplitude of the emerging bat stream. We recorded the video and audio of an emerging colony of Mexican free-tailed bats from two cave locations across multiple nights. Instantaneous bat counts were calculated from the video frames, and the bat stream's acoustic amplitude corresponding to each video frame was determined using three different methods for calculating acoustic intensity. We found a significant link between all three acoustic parameters and bat count, with the highest R (2) of 0.742 linking RMS pressure and bat count. Additionally, the relationship between acoustics and population size at one cave location could accurately predict the population size at another cave location. The data were gathered with low-cost, easy-to-operate equipment, and the data analysis can be easily accomplished using automated scripts or with open-source acoustic software. These results are a potential first step towards creating an acoustic model to estimate bat population at large cave colonies worldwide.
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Stowell D, Petrusková T, Šálek M, Linhart P. Automatic acoustic identification of individuals in multiple species: improving identification across recording conditions. J R Soc Interface 2020; 16:20180940. [PMID: 30966953 PMCID: PMC6505557 DOI: 10.1098/rsif.2018.0940] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Many animals emit vocal sounds which, independently from the sounds' function, contain some individually distinctive signature. Thus the automatic recognition of individuals by sound is a potentially powerful tool for zoology and ecology research and practical monitoring. Here, we present a general automatic identification method that can work across multiple animal species with various levels of complexity in their communication systems. We further introduce new analysis techniques based on dataset manipulations that can evaluate the robustness and generality of a classifier. By using these techniques, we confirmed the presence of experimental confounds in situations resembling those from past studies. We introduce data manipulations that can reduce the impact of these confounds, compatible with any classifier. We suggest that assessment of confounds should become a standard part of future studies to ensure they do not report over-optimistic results. We provide annotated recordings used for analyses along with this study and we call for dataset sharing to be a common practice to enhance the development of methods and comparisons of results.
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Research Support, Non-U.S. Gov't |
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Campos-Cerqueira M, Arendt WJ, Wunderle JM, Aide TM. Have bird distributions shifted along an elevational gradient on a tropical mountain? Ecol Evol 2017; 7:9914-9924. [PMID: 29238525 PMCID: PMC5723601 DOI: 10.1002/ece3.3520] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2017] [Revised: 09/13/2017] [Accepted: 09/28/2017] [Indexed: 11/10/2022] Open
Abstract
An upward shift in elevation is one of the most conspicuous species responses to climate change. Nevertheless, downward shifts and, apparently, the absences of response have also been recently reported. Given the growing evidence of multiple responses of species distributions due to climate change and the paucity of studies in the tropics, we evaluated the response of a montane bird community to climate change, without the confounding effects of land‐use change. To test for elevational shifts, we compared the distribution of 21 avian species in 1998 and 2015 using occupancy models. The historical data set was based on point counts, whereas the contemporary data set was based on acoustic monitoring. We detected a similar number of species in historical (36) and contemporary data sets (33). We show an overall pattern of no significant change in range limits for most species, although there was a significant shift in the range limit of eight species (38%). Elevation limits shifted mostly upward, and this pattern was more common for upper than lower limits. Our results highlight the variability of species responses to climate change and illustrate how acoustic monitoring provides an easy and powerful way to monitor animal populations along elevational gradients.
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Gorick CM, Sheybani ND, Curley CT, Price RJ. Listening in on the Microbubble Crowd: Advanced Acoustic Monitoring for Improved Control of Blood-Brain Barrier Opening with Focused Ultrasound. Theranostics 2018; 8:2988-2991. [PMID: 29897053 PMCID: PMC5996352 DOI: 10.7150/thno.26025] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2018] [Accepted: 03/12/2018] [Indexed: 01/21/2023] Open
Abstract
Non-invasive drug and gene delivery to the brain to treat central nervous system pathologies has long been inhibited by the blood-brain barrier. The activation of microbubbles with focused ultrasound has emerged as a promising non-invasive approach to circumvent this obstacle, by transiently disrupting the blood-brain barrier and permitting passage of systemically administered therapeutics into the tissue. Clinical trials are underway to evaluate the safety of this technique; however, concerns remain regarding the potential for the treatment to induce sterile inflammation or petechiae. In this issue of Theranostics, Jones et al.[1] address these concerns through the development of an advanced three-dimensional imaging system for monitoring acoustic emissions from oscillating microbubbles. When subharmonic emissions are detected with this system, focused ultrasound pressure is reduced by 50% for the remainder of the treatment. This serves to transiently open the blood-brain barrier without generating adverse effects. While the ideal configuration of the transducer array for treatment and monitoring still presents an area for further optimization, the approach indicates that the acoustic signature of microbubble behavior within the skull can be used to ensure safe and effective blood-brain barrier opening using focused ultrasound.
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Editorial |
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Amorim F, Jorge I, Beja P, Rebelo H. Following the water? Landscape-scale temporal changes in bat spatial distribution in relation to Mediterranean summer drought. Ecol Evol 2018; 8:5801-5814. [PMID: 29938094 PMCID: PMC6010748 DOI: 10.1002/ece3.4119] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2017] [Revised: 03/14/2018] [Accepted: 03/29/2018] [Indexed: 11/16/2022] Open
Abstract
Understanding how the spatial distribution of ecological resources shapes species' diversity and abundance in human-modified landscapes is a central theme in conservation biology. However, studies often disregard that such patterns may vary over time, thereby potentially missing critical environmental constraints to species persistence. This may be particularly important in highly mobile species such as bats, which are able to track temporal variations in spatial resource distribution. Here we test the hypothesis that bats in Mediterranean landscapes are strongly affected by the progressive reduction in water availability during the seasonal summer drought. We analyzed the effects of landscape composition and structure on bat diversity and activity, during pregnancy, lactation, and postlactation periods, and identified the most influential variables within and across periods. Water bodies showed the strongest positive effect on bats, followed by riparian habitats and areas with steeper (>30%) slopes. However, while during pregnancy, there were only small landscape effects, these increased during lactation and postlactation, highlighting a progressively stronger association with water habitats during the summer drought. The spatial projection of habitat models showed that the landscape distribution of bat diversity and activity hotspots changed markedly over time. During pregnancy, the spatial pattern of hotspot distribution was weakly defined, while during lactation and particularly postlactation, there was a concentration of hotspots along permanently flowing watercourses. Our study highlights that permanently flowing watercourses are critical for bat conservation in Mediterranean landscapes, calling for measures to counteract their ongoing degradation due in particular to climate change, water abstraction and damming. More generally, our study underlines the importance of considering the temporal dimension in habitat selection studies, without which there is the risk of overlooking the importance of habitats that are key for species persistence only at certain times of the year.
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Risch D, Gales NJ, Gedamke J, Kindermann L, Nowacek DP, Read AJ, Siebert U, Van Opzeeland IC, Van Parijs SM, Friedlaender AS. Mysterious bio-duck sound attributed to the Antarctic minke whale (Balaenoptera bonaerensis). Biol Lett 2014; 10:20140175. [PMID: 24759372 PMCID: PMC4013705 DOI: 10.1098/rsbl.2014.0175] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
For decades, the bio-duck sound has been recorded in the Southern Ocean, but the animal producing it has remained a mystery. Heard mainly during austral winter in the Southern Ocean, this ubiquitous sound has been recorded in Antarctic waters and contemporaneously off the Australian west coast. Here, we present conclusive evidence that the bio-duck sound is produced by Antarctic minke whales (Balaenoptera bonaerensis). We analysed data from multi-sensor acoustic recording tags that included intense bio-duck sounds as well as singular downsweeps that have previously been attributed to this species. This finding allows the interpretation of a wealth of long-term acoustic recordings for this previously acoustically concealed species, which will improve our understanding of the distribution, abundance and behaviour of Antarctic minke whales. This is critical information for a species that inhabits a difficult to access sea-ice environment that is changing rapidly in some regions and has been the subject of contentious lethal sampling efforts and ongoing international legal action.
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Research Support, Non-U.S. Gov't |
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Stoeger AS, Zeppelzauer M, Baotic A. Age group estimation in free-ranging African elephants based on acoustic cues of low-frequency rumbles. BIOACOUSTICS 2014; 23:231-246. [PMID: 25821348 DOI: 10.1080/09524622.2014.888375] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Abstract
Animal vocal signals are increasingly used to monitor wildlife populations and to obtain estimates of species occurrence and abundance. In the future, acoustic monitoring should function not only to detect animals, but also to extract detailed information about populations by discriminating sexes, age groups, social or kin groups, and potentially individuals. Here we show that it is possible to estimate age groups of African elephants (Loxodonta africana) based on acoustic parameters extracted from rumbles recorded under field conditions in a National Park in South Africa. Statistical models reached up to 70 % correct classification to four age groups (infants, calves, juveniles, adults) and 95 % correct classification when categorising into two groups (infants/calves lumped into one group versus adults). The models revealed that parameters representing absolute frequency values have the most discriminative power. Comparable classification results were obtained by fully automated classification of rumbles by high-dimensional features that represent the entire spectral envelope, such as MFCC (75 % correct classification) and GFCC (74 % correct classification). The reported results and methods provide the scientific foundation for a future system that could potentially automatically estimate the demography of an acoustically monitored elephant group or population.
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Salvarina I, Gravier D, Rothhaupt KO. Seasonal bat activity related to insect emergence at three temperate lakes. Ecol Evol 2018; 8:3738-3750. [PMID: 29686854 PMCID: PMC5901160 DOI: 10.1002/ece3.3943] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2017] [Revised: 01/15/2018] [Accepted: 01/27/2018] [Indexed: 11/28/2022] Open
Abstract
Knowledge of aquatic food resources entering terrestrial systems is important for food web studies and conservation planning. Bats, among other terrestrial consumers, often profit from aquatic insect emergence and their activity might be closely related to such events. However, there is a lack of studies which monitor bat activity simultaneously with aquatic insect emergence, especially from lakes. Thus, our aim was to understand the relationship between insect emergence and bat activity, and investigate whether there is a general spatial or seasonal pattern at lakeshores. We assessed whole‐night bat activity using acoustic monitoring and caught emerging and aerial flying insects at three different lakes through three seasons. We predicted that insect availability and seasonality explain the variation in bat activity, independent of the lake size and characteristics. Spatial (between lakes) differences of bat activity were stronger than temporal (seasonal) differences. Bat activity did not always correlate to insect emergence, probably because other factors, such as habitat characteristics, or bats’ energy requirements, play an important role as well. Aerial flying insects explained bat activity better than the emerged aquatic insects in the lake with lowest insect emergence. Bats were active throughout the night with some activity peaks, and the pattern of their activity also differed among lakes and seasons. Lakes are important habitats for bats, as they support diverse bat communities and activity throughout the night and the year when bats are active. Our study highlights that there are spatial and temporal differences in bat activity and its hourly nocturnal pattern, that should be considered when investigating aquatic–terrestrial interactions or designing conservation and monitoring plans.
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Suarez-Rubio M, Ille C, Bruckner A. Insectivorous bats respond to vegetation complexity in urban green spaces. Ecol Evol 2018; 8:3240-3253. [PMID: 29607021 PMCID: PMC5869212 DOI: 10.1002/ece3.3897] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2017] [Revised: 11/30/2017] [Accepted: 01/14/2018] [Indexed: 11/30/2022] Open
Abstract
Structural complexity is known to determine habitat quality for insectivorous bats, but how bats respond to habitat complexity in highly modified areas such as urban green spaces has been little explored. Furthermore, it is uncertain whether a recently developed measure of structural complexity is as effective as field‐based surveys when applied to urban environments. We assessed whether image‐derived structural complexity (MIG) was as/more effective than field‐based descriptors in this environment and evaluated the response of insectivorous bats to structural complexity in urban green spaces. Bat activity and species richness were assessed with ultrasonic devices at 180 locations within green spaces in Vienna, Austria. Vegetation complexity was assessed using 17 field‐based descriptors and by calculating the mean information gain (MIG) using digital images. Total bat activity and species richness decreased with increasing structural complexity of canopy cover, suggesting maneuverability and echolocation (sensorial) challenges for bat species using the canopy for flight and foraging. The negative response of functional groups to increased complexity was stronger for open‐space foragers than for edge‐space foragers. Nyctalus noctula, a species foraging in open space, showed a negative response to structural complexity, whereas Pipistrellus pygmaeus, an edge‐space forager, was positively influenced by the number of trees. Our results show that MIG is a useful, time‐ and cost‐effective tool to measure habitat complexity that complemented field‐based descriptors. Response of insectivorous bats to structural complexity was group‐ and species‐specific, which highlights the need for manifold management strategies (e.g., increasing or reinstating the extent of ground vegetation cover) to fulfill different species’ requirements and to conserve insectivorous bats in urban green spaces.
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Li H, Kalcounis‐Rueppell M. Separating the effects of water quality and urbanization on temperate insectivorous bats at the landscape scale. Ecol Evol 2018; 8:667-678. [PMID: 29321903 PMCID: PMC5756845 DOI: 10.1002/ece3.3693] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2017] [Revised: 10/16/2017] [Accepted: 11/08/2017] [Indexed: 11/21/2022] Open
Abstract
Many local scale studies have shown that bats respond to water quality degradation or urbanization in a species-specific manner. However, few have separated the effects of urbanization versus water quality degradation on bats, in single city or single watershed case studies. Across North Carolina, USA, we used the standardized North American Bat Monitoring Program mobile transect protocol to survey bat activity in 2015 and 2016 at 41 sites. We collected statewide water quality and urban land cover data to disentangle the effects of urbanization and water quality degradation on bats at the landscape scale. We found that statewide, water quality degradation and urbanization were not correlated. We found that bats responded to water quality degradation and urbanization independently at the landscape scale. Eptesicus fuscus and Lasiurus cinereus negatively responded to water quality degradation. Lasiurus borealis and Perimyotis subflavus positively responded to water quality degradation. Lasionycteris noctivagans did not respond to water quality degradation but was more active in more urbanized areas. Tadarida brasiliensis positively responded to urbanization and was less active in areas with degraded water quality. We show that bat-water quality relationships found at the local scale are evident at a landscape scale. We confirm that bats are useful bioindicators for both urbanization and water quality degradation. We suggest that water quality can be used to predict the presence of bat species of conservation concern, such as P. subflavus, in areas where it has not been studied locally.
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Papin M, Pichenot J, Guérold F, Germain E. Acoustic localization at large scales: a promising method for grey wolf monitoring. Front Zool 2018; 15:11. [PMID: 29681989 PMCID: PMC5897954 DOI: 10.1186/s12983-018-0260-2] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2017] [Accepted: 03/25/2018] [Indexed: 11/15/2022] Open
Abstract
Background The grey wolf (Canis lupus) is naturally recolonizing its former habitats in Europe where it was extirpated during the previous two centuries. The management of this protected species is often controversial and its monitoring is a challenge for conservation purposes. However, this elusive carnivore can disperse over long distances in various natural contexts, making its monitoring difficult. Moreover, methods used for collecting signs of presence are usually time-consuming and/or costly. Currently, new acoustic recording tools are contributing to the development of passive acoustic methods as alternative approaches for detecting, monitoring, or identifying species that produce sounds in nature, such as the grey wolf. In the present study, we conducted field experiments to investigate the possibility of using a low-density microphone array to localize wolves at a large scale in two contrasting natural environments in north-eastern France. For scientific and social reasons, the experiments were based on a synthetic sound with similar acoustic properties to howls. This sound was broadcast at several sites. Then, localization estimates and the accuracy were calculated. Finally, linear mixed-effects models were used to identify the factors that influenced the localization accuracy. Results Among 354 nocturnal broadcasts in total, 269 were recorded by at least one autonomous recorder, thereby demonstrating the potential of this tool. Besides, 59 broadcasts were recorded by at least four microphones and used for acoustic localization. The broadcast sites were localized with an overall mean accuracy of 315 ± 617 (standard deviation) m. After setting a threshold for the temporal error value associated with the estimated coordinates, some unreliable values were excluded and the mean accuracy decreased to 167 ± 308 m. The number of broadcasts recorded was higher in the lowland environment, but the localization accuracy was similar in both environments, although it varied significantly among different nights in each study area. Conclusions Our results confirm the potential of using acoustic methods to localize wolves with high accuracy, in different natural environments and at large spatial scales. Passive acoustic methods are suitable for monitoring the dynamics of grey wolf recolonization and so, will contribute to enhance conservation and management plans.
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Xiao Y, Carlson D, Boris L, Mabary J, Lin Z, Nicodème F, Cuttica M, Kahrilas PJ, Pandolfino JE. The acoustic cough monitoring and manometric profile of cough and throat clearing. Dis Esophagus 2014; 27:5-12. [PMID: 23442178 PMCID: PMC4350923 DOI: 10.1111/dote.12038] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Cough and throat clearing might be difficult to differentiate when trying to detect them acoustically or manometrically. The aim of this study was to assess the accuracy of acoustic monitoring for detecting cough and throat clearing, and to also determine whether these two symptoms present with different manometric profiles on esophageal pressure topography. Ten asymptomatic volunteers (seven females, mean age 31.1) were trained to simulate cough and throat clearing in a randomized order every 6 minutes during simultaneous acoustic monitoring and high-resolution manometry. The accuracy of automated acoustic analysis and two blinded reviewers were compared. The pattern of the events and the duration of the pressure changes were assessed using the 30 mmHg isobaric contour. There were 50 cough and 50 throat-clearing events according to the protocol. The sensitivity and specificity of automated acoustic analysis was 84% and 50% for cough, while the blinded analysis using sound revealed a sensitivity and specificity of 94% and 92%. The manometric profile of both cough and throat clearing was similar in terms of qualitative findings; however, cough was associated with a greater number of repetitive pressurizations and a more vigorous upper esophageal sphincter contraction compared with throat clearing. The acoustic analysis software has a moderate sensitivity and poor specificity to detect cough. The profile of cough and throat clearing in pressure topography revealed a similar qualitative pattern of pressurization with more vigorous pressure changes and a greater rate of repetitive pressurizations in cough.
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Williams EM, O'Donnell CFJ, Armstrong DP. Cost-benefit analysis of acoustic recorders as a solution to sampling challenges experienced monitoring cryptic species. Ecol Evol 2018; 8:6839-6848. [PMID: 30038779 PMCID: PMC6053556 DOI: 10.1002/ece3.4199] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2018] [Revised: 04/06/2018] [Accepted: 04/22/2018] [Indexed: 11/06/2022] Open
Abstract
The inferences that can be made from any study are limited by the quality of the sampling design. By bad luck, when monitoring species that are difficult to detect (cryptic), sampling designs become dictated by what is feasible rather than what is desired. We calibrated and conducted a cost-benefit analysis of four acoustic recorder options that were being considered as potential solutions to several sampling restrictions experienced while monitoring the Australasian bittern, a cryptic wetland bird. Such sampling restrictions are commonly experienced while monitoring many different endangered species, particularly those that are cryptic. The recorder options included mono and stereo devices, with two sound file processing options (visual and audible analysis). Recording devices provided call-count data similar to those collected by field observers but at a fraction of the cost, which meant that "idealistic" sampling regimes, previously thought to be too expensive, became feasible for bitterns. Our study is one of the few to assess the monetary value of recording devices in the context of data quality, allowing trade-offs (and potential solutions) commonly experienced while monitoring cryptic endangered species to be shown and compared more clearly. The ability to overcome challenges of monitoring cryptic species in this way increases research possibilities for data deficient species and is applicable to any species with similar monitoring challenges.
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Gallo T, Lehrer EW, Fidino M, Kilgour RJ, Wolff PJ, Magle SB. Need for multiscale planning for conservation of urban bats. CONSERVATION BIOLOGY : THE JOURNAL OF THE SOCIETY FOR CONSERVATION BIOLOGY 2018; 32:638-647. [PMID: 29124788 DOI: 10.1111/cobi.13047] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2017] [Revised: 10/11/2017] [Accepted: 10/27/2017] [Indexed: 06/07/2023]
Abstract
For over a century there have been continual efforts to incorporate nature into urban planning. These efforts (i.e., urban reconciliation) aim to manage and create habitats that support biodiversity within cities. Given that species select habitat at different spatial scales, understanding the scale at which urban species respond to their environment is critical to the success of urban reconciliation efforts. We assessed species-habitat relationships for common bat species at 50-m, 500-m, and 1 km spatial scales in the Chicago (U.S.A.) metropolitan area and predicted bat activity across the greater Chicago region. Habitat characteristics across all measured scales were important predictors of silver-haired bat (Lasionycteris noctivagans) and eastern red bat (Lasiurus borealis) activity, and big brown bat (Eptesicus fuscus) activity was significantly lower at urban sites relative to rural sites. Open vegetation had a negative effect on silver-haired bat activity at the 50-m scale but a positive effect at the 500-m scale, indicating potential shifts in the relative importance of some habitat characteristics at different scales. These results demonstrate that localized effects may be constrained by broader spatial patterns. Our findings highlight the importance of considering scale in urban reconciliation efforts and our landscape predictions provide information that can help prioritize urban conservation work.
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Insley SJ, Halliday WD, Mouy X, Diogou N. Bowhead whales overwinter in the Amundsen Gulf and Eastern Beaufort Sea. ROYAL SOCIETY OPEN SCIENCE 2021; 8:202268. [PMID: 33996127 PMCID: PMC8059979 DOI: 10.1098/rsos.202268] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Accepted: 03/22/2021] [Indexed: 06/12/2023]
Abstract
The bowhead whale is the only baleen whale endemic to the Arctic and is well adapted to this environment. Bowheads live near the polar ice edge for much of the year and although sea ice dynamics are not the only driver of their annual migratory movements, it likely plays a key role. Given the intrinsic variability of open water and ice, one might expect bowhead migratory plasticity to be high and linked to this proximate environmental factor. Here, through a network of underwater passive acoustic recorders, we document the first known occurrence of bowheads overwintering in what is normally their summer foraging grounds in the Amundsen Gulf and eastern Beaufort Sea. The underlying question is whether this is the leading edge of a phenological shift in a species' migratory behaviour in an environment undergoing dramatic shifts due to climate change.
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Sugai LSM. Pandemics and the Need for Automated Systems for Biodiversity Monitoring. J Wildl Manage 2020; 84:1424-1426. [PMID: 32904967 PMCID: PMC7461419 DOI: 10.1002/jwmg.21946] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2020] [Revised: 07/28/2020] [Accepted: 07/29/2020] [Indexed: 11/30/2022]
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Gontier F, Lagrange M, Aumond P, Can A, Lavandier C. An Efficient Audio Coding Scheme for Quantitative and Qualitative Large Scale Acoustic Monitoring Using the Sensor Grid Approach. SENSORS 2017; 17:s17122758. [PMID: 29186021 PMCID: PMC5751573 DOI: 10.3390/s17122758] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/17/2017] [Revised: 11/20/2017] [Accepted: 11/24/2017] [Indexed: 11/16/2022]
Abstract
The spreading of urban areas and the growth of human population worldwide raise societal and environmental concerns. To better address these concerns, the monitoring of the acoustic environment in urban as well as rural or wilderness areas is an important matter. Building on the recent development of low cost hardware acoustic sensors, we propose in this paper to consider a sensor grid approach to tackle this issue. In this kind of approach, the crucial question is the nature of the data that are transmitted from the sensors to the processing and archival servers. To this end, we propose an efficient audio coding scheme based on third octave band spectral representation that allows: (1) the estimation of standard acoustic indicators; and (2) the recognition of acoustic events at state-of-the-art performance rate. The former is useful to provide quantitative information about the acoustic environment, while the latter is useful to gather qualitative information and build perceptually motivated indicators using for example the emergence of a given sound source. The coding scheme is also demonstrated to transmit spectrally encoded data that, reverted to the time domain using state-of-the-art techniques, are not intelligible, thus protecting the privacy of citizens.
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Dong L, Dong J, Caruso F, Zhao L, Li S. Temporal variation of the underwater soundscape in Jiaotou Bay, an Indo-Pacific humpback dolphin (Sousa chinensis) habitat off Hainan Island, China. Integr Zool 2021; 16:477-498. [PMID: 33818895 DOI: 10.1111/1749-4877.12530] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The underwater soundscape is an important ecological element affecting numerous aquatic animals, in particular dolphins, which must identify salient cues from ambient ocean noise. In this study, temporal variations in the soundscape of Jiaotou Bay were monitored from February 2016 to January 2017, where a population of Indo-Pacific humpback dolphins (Sousa chinensis) has recently been a regular sighting. An autonomous acoustic recorder was deployed in shallow waters, and 1/3-octave band sound pressure levels (SPLs) were calculated with central frequencies ranging from 25 Hz to 40 kHz, then were grouped into 3 subdivided bands via cluster analysis. SPLs at each major band showed significant differences on a diel, fishing-related period, seasonal, and tidal phase scale. Anthropogenic noise generated by passing ships and underwater explosions were recorded in the study area. The fish and dolphin acoustic activities both exhibited diel and seasonal variations, but no tidal cycle patterns. A negative significant relationship between anthropogenic sound detection rates and dolphin detection rates were observed, and fish detection rates showed no effect on dolphin detection rates, indicating anthropogenic activity avoidance and no forced foraging in dolphins in the study area. The results provide fundamental insight into the acoustic dynamics of an important Indo-Pacific humpback dolphin habitat within a coastal area affected by a rapid increase in human activity, and demonstrate the need to protect animal habitat from anthropogenic noises.
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Zhirnov AA, Chesnokov GY, Stepanov KV, Gritsenko TV, Khan RI, Koshelev KI, Chernutsky AO, Svelto C, Pnev AB, Valba OV. Fiber-Optic Telecommunication Network Wells Monitoring by Phase-Sensitive Optical Time-Domain Reflectometer with Disturbance Recognition. SENSORS (BASEL, SWITZERLAND) 2023; 23:4978. [PMID: 37430897 DOI: 10.3390/s23104978] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Revised: 05/05/2023] [Accepted: 05/18/2023] [Indexed: 07/12/2023]
Abstract
The paper presents the application of a phase-sensitive optical time-domain reflectometer (phi-OTDR) in the field of urban infrastructure monitoring. In particular, the branched structure of the urban network of telecommunication wells. The encountered tasks and difficulties are described. The possibilities of usage are substantiated, and the numerical values of the event quality classification algorithms applied to experimental data are calculated using machine learning methods. Among the considered methods, the best results were shown by convolutional neural networks, with a probability of correct classification as high as 98.55%.
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Milchram M, Suarez‐Rubio M, Schröder A, Bruckner A. Estimating population density of insectivorous bats based on stationary acoustic detectors: A case study. Ecol Evol 2020; 10:1135-1144. [PMID: 32076503 PMCID: PMC7029071 DOI: 10.1002/ece3.5928] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2019] [Revised: 11/18/2019] [Accepted: 11/22/2019] [Indexed: 11/24/2022] Open
Abstract
Automated recording units are commonly used by consultants to assess environmental impacts and to monitor animal populations. Although estimating population density of bats using stationary acoustic detectors is key for evaluating environmental impacts, estimating densities from call activity data is only possible through recently developed numerical methods, as the recognition of calling individuals is impossible.We tested the applicability of generalized random encounter models (gREMs) for determining population densities of three bat species (Common pipistrelle Pipistrellus pipistrellus, Northern bat Eptesicus nilssonii, and Natterer's bat Myotis nattereri) based on passively collected acoustical data. To validate the results, we compared them to (a) density estimates from the literature and to (b) Royle-Nichols (RN) models of detection/nondetection data.Our estimates for M. nattereri matched both the published data and RN-model results. For E. nilssonii, the gREM yielded similar estimates to the RN-models, but the published estimates were more than twice as high. This discrepancy might be because the high-altitude flight of E. nilssonii is not accounted for in gREMs. Results of gREMs for P. pipistrellus were supported by published data but were ~10 times higher than those of RN-models. RN-models use detection/nondetection data, and this loss of information probably affected population estimates of very active species like P. pipistrellus.gREM models provided realistic estimates of bat population densities based on automatically recorded call activity data. However, the average flight altitude of species should be accounted for in future analyses. We suggest including flight altitude in the calculation of the detection range to assess the detection sphere more accurately and to obtain more precise density estimates.
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Sugai LSM, Silva TSF, Llusia D, Siqueira T. Drivers of assemblage-wide calling activity in tropical anurans and the role of temporal resolution. J Anim Ecol 2020; 90:673-684. [PMID: 33289069 DOI: 10.1111/1365-2656.13399] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2020] [Accepted: 11/06/2020] [Indexed: 11/27/2022]
Abstract
Temporal scale in animal communities is often associated with seasonality, despite the large variation in species activity during a diel cycle. A gap thus remains in understanding the dynamics of short-term activity in animal communities. Here we assessed calling activity of tropical anurans and addressed how species composition varied during night activity in assemblages along gradients of local and landscape environmental heterogeneity. We investigated 39 anuran assemblages in the Pantanal wetlands (Brazil) with passive acoustic monitoring during the peak of one breeding season, and first determined changes in species composition between night periods (early, mid and late) using two temporal resolutions (1- and 3-hr intervals). Then, we addressed the role of habitat structure (local and landscape heterogeneity variables from field-based and remote sensing metrics) and ecological context (species richness and phylogenetic relatedness) in determining changes in species composition (a) between night periods and (b) across days. Nocturnal calling activity of anuran assemblages varied more within the 1-hr resolution than the 3-hr resolution. Differences in species composition between early- and late-night periods were related to local habitat structure and phylogenetic relatedness, while a low variation in compositional changes across days was associated with low-heterogeneous landscapes. None of these relationships were observed using the coarser temporal resolution (3 hr). Our findings on the variation of calling activity in tropical anuran assemblages suggest potential trade-offs mediated by fine-temporal partitioning. Local and landscape heterogeneity may provide conditions for spatial partitioning, while the relatedness among co-signalling species provides cues on the ecological overlap of species with similar requirements. These relationships suggest a role of niche dimensional complementarity on the structuring of these anuran assemblages over fine-temporal scales. We argue that fine-temporal differences between species in breeding activity can influence the outcome of species interaction and thus, addressing temporal scaling issues can improve our understanding of the dynamics of animal communities.
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Thomas RJ, Davison SP. Seasonal swarming behavior of Myotis bats revealed by integrated monitoring, involving passive acoustic monitoring with automated analysis, trapping, and video monitoring. Ecol Evol 2022; 12:e9344. [PMID: 36188521 PMCID: PMC9502064 DOI: 10.1002/ece3.9344] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2020] [Revised: 08/16/2022] [Accepted: 09/06/2022] [Indexed: 11/10/2022] Open
Abstract
Bat abundance, diversity, and behavior can be monitored by capturing bats for identification and measurement in the hand, but this has several disadvantages. These include disturbance to the bats, which limits the frequency with which captures can be made at an individual capture site, and potentially alters the behaviors being studied. Infrared video monitoring, passive acoustic recording and automated analysis and identification of bat calls offers an alternative set of noninvasive methods for monitoring bats. In this study, we examine the effectiveness of acoustic monitoring in comparison with capture-based and video monitoring of seasonal swarming behavior among several species of Myotis bats in southern Britain. We applied these complementary approaches to describe seasonal, overnight, and species-specific variation in swarming behavior in a multispecies community of Myotis bats. We show that the three monitoring approaches have advantages and disadvantages for different tasks, but can be viewed as highly complementary methods for addressing different types of research questions. In our study of swarming behavior, capture and examination of bats in the hand was necessary for measuring sex ratios, reproductive status, and even for confirmation of species identification for some difficult to separate taxa. Capture is also an essential aspect of tagging bats for individual identification and tracking studies. Video monitoring is useful for understanding the behavior of bats at swarming sites, and measuring the flux of individuals into and out of roosting or swarming sites. Passive acoustic monitoring is a valuable noninvasive method for continuous monitoring of within-night, seasonal, and between-year variation in the abundance of bat calls. These can be used as an index of variation in relative abundance within-but not between-bat species.
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Schneiderová I, Zouhar J, Štefanská L, Bolfíková BČ, Lhota S, Brandl P. Vocal activity of lesser galagos (Galago spp.) at zoos. Zoo Biol 2016; 35:147-56. [PMID: 26741794 DOI: 10.1002/zoo.21261] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2015] [Accepted: 12/16/2015] [Indexed: 11/06/2022]
Abstract
Almost nothing is known about the natural vocal behavior of lesser galagos living in zoos. This is perhaps because they are usually kept in nocturnal exhibits separated from the visitors by a transparent and acoustically insulating glass barrier. The aim of the present study was therefore to fill this gap in knowledge of the vocal behavior of lesser galagos from zoos. This knowledge might be beneficial because the vocalizations of these small primates can be used for species determination. We performed a 10-day-long acoustic monitoring of vocal activity in each of seven various groups of Galago senegalensis and G. moholi living at four zoos. We quantitatively evaluated the occurrence of four loud vocalization types present in both species, including the most species-specific advertisement call. We found that qualitative as well as quantitative differences exist in the vocal behavior of the studied groups. We confirmed that the observed vocalization types can be collected from lesser galagos living at zoos, and the success can be increased by selecting larger and more diverse groups. We found two distinct patterns of diel vocal activity in the most vocally active groups. G. senegalensis groups were most vocally active at the beginning and at the end of their activity period, whereas one G. moholi group showed an opposite pattern. The latter is surprising, as it is generally accepted that lesser galagos emit advertisement calls especially at dawn and dusk, i.e., at the beginning and at the end of their diel activity.
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Bian Q, Wang C, Hao ZZ. Application of eco acoustic monitoring in the field of biodiversity science. YING YONG SHENG TAI XUE BAO = THE JOURNAL OF APPLIED ECOLOGY 2021; 32:1119-1128. [PMID: 33754580 DOI: 10.13287/j.1001-9332.202103.032] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
Sound is an important way of communication among organisms. The monitoring and analy-sis of biological sound is an emerging method to describe and evaluate biodiversity. This method does not invade or damage the natural environment. By recording ecological information through sound, it can effectively reflect the relevant characteristics of biodiversity. The sound-based exploration of biodiversity change has broadened the interdisciplinary approach and has been increasingly applied to ecological research. Here, we expounded on the main theoretical foundations and research methods of using acoustic monitoring to assess biodiversity. We introduced related research fields from two aspects, namely the biodiversity of vocal animals and the temporal and spatial diversity of soundscape. We presented examples of the application of acoustic monitoring to assess the impact of land-use change, climate change and urbanization on biodiversity. Finally, we proposed the future direction of development, and hope that the potential of sound surveys could be further explored to provide an effective reference for biodiversity monitoring and assessment.
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Schneiderová I, Vodička R. Bioacoustics as a tool to monitor the estrus cycle in a female slow loris (Nycticebus sp.). Zoo Biol 2021; 40:575-583. [PMID: 34223663 DOI: 10.1002/zoo.21637] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2020] [Revised: 05/31/2021] [Accepted: 06/14/2021] [Indexed: 11/08/2022]
Abstract
Evidence-based husbandry leading to increased reproductive success and strengthening of ex situ populations of slow lorises (Nycticebus spp.) living in zoos is highly important. Better fulfillment of their social needs is one of the main priorities in achieving these objectives. We performed 21-month long acoustic monitoring of a zoo-kept female slow loris (Nycticebus sp.) housed either singly or with one of two males to examine whether her estrus cycle potentially could be detected based on her vocal activity. We found a regular cycle of remarkably increased whistle production that lasted approximately 31.2 days in a nocturnal exhibit and approximately 39 days in an off-show room. The regular cycle of increased vocal activity corresponded to a previously described estrus cycle of slow lorises and was observable in the presence of both males as well as when the female was housed singly. Additionally, vaginal smears collected from the female close to the peak period of her vocal activity showed signs of proestrus and estrus. The acoustic properties of the whistles, specifically that they did not overlap with or were loud enough to exceed background noise commonly occurring in zoos, made them perfect candidates for analyses involving automatic processing of a large number of recordings. We conclude that bioacoustics represents a promising, completely noninvasive and relatively easily applicable tool that allows detection and anticipation of the estrus cycle in some females, thus improving the social management of slow lorises living in zoos.
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