100 years of anthropogenic impact causes changes in freshwater functional biodiversity

Despite efforts from scientists and regulators, biodiversity is declining at an alarming rate. Unless we find transformative solutions to preserve biodiversity, future generations may not be able to enjoy nature's services. We have developed a conceptual framework that establishes the links between biodiversity dynamics and abiotic change through time and space using artificial intelligence. Here, we apply this framework to a freshwater ecosystem with a known history of human impact and study 100 years of community-level biodiversity, climate change and chemical pollution trends. We apply explainable network models with multimodal learning to community-level functional biodiversity measured with multilocus metabarcoding, to establish correlations with biocides and climate change records. We observed that the freshwater community assemblage and functionality changed over time without returning to its original state, even if the lake partially recovered in recent times. Insecticides and fungicides, combined with extreme temperature events and precipitation, explained up to 90% of the functional biodiversity changes. The community-level biodiversity approach used here reliably explained freshwater ecosystem shifts. These shifts were not observed when using traditional quality indices (e.g. Trophic Diatom Index). Our study advocates the use of high-throughput systemic approaches on long-term trends over species-focused ecological surveys to identify the environmental factors that cause loss of biodiversity and disrupt ecosystem functions.

Side Effects of Kaolin and Bunch-Zone Leaf Removal on Generalist Predators in Vineyards

In vineyards, kaolin application and bunch-zone leaf removal (LR) were effective in the control of leafhoppers and Lobesia botrana, but their side effects on generalist predators are still poorly understood. In north-eastern Italian vineyards, the impact of kaolin and LR on species and functional diversity of spiders, as well as the abundance of spiders and generalist predatory insects, was assessed in one vineyard for two consecutive years and in two vineyards for one year. The ecological indices of the spider community were never influenced by kaolin and only in one case were they influenced by LR. At the spider family level, kaolin reduced the abundance of Araneidae, Oxypidae and Salticidae, but only in single cases. In single cases, kaolin reduced the amount of Orius sp. anthocorids and increased that of Scymninae coccinellids, whereas LR increased the amount of Aeolothrips sp. The moderate use of kaolin and the application of LR had negligible and inconsistent impacts on generalist predatory arthropods in vineyards and were therefore, compatible with IPM strategies.

Conservation of Non-Pest Whiteflies and Natural Enemies of the Cabbage Whitefly Aleyrodes proletella on Perennial Plants for Use in Non-Crop Habitats

Aleyrodes proletella causes severe economic damage to several Brassica crops. Its naturally occurring enemies often immigrate late in the season or appear in low numbers on cabbage. This field study aims to permanently increase the local abundance of A. proletella's natural enemies by providing the non-pest whitefly Aleyrodes lonicerae as an alternative and overwintering host/prey. Therefore, the population dynamics of natural enemies on different perennial herbaceous plants pre-infested with A. lonicerae were determined at two field locations over two winter periods. Most A. lonicerae colonized (on average 166.22 puparia per m²) and overwintered (342.19 adults per m²) on wood avens Geum urbanum. Furthermore, the abundance of A. proletella main parasitoid Encarsia tricolor (28.50 parasitized puparia per m²) and spiders (12.13 per m²) was 3-74 times and 3-14 times higher, respectively, on G. urbanum compared to the other experimental plants. Conclusively, G. urbanum pre-infested with A. lonicerae permanently promoted natural enemies of A. proletella by serving as shelter, reproduction, and overwintering habitat. A potential implementation of G. urbanum in conservation biological control strategies (e.g., tailored flower strips, hedgerows) against A. proletella are discussed and suggestions for future research are given.

Do floral resources affect fitness of adult Cydia pomonella (Linnaeus 1758) (Lepidoptera: Tortricidae)?

The introduction of flowering plants into orchards can increase functional biodiversity in pome fruit cultivation. Plants provide nectar, pollen and prey resources supporting pollinators and natural enemies. However, pests may also benefit from floral diets and a careful selection of plants is necessary to reduce any risk of pest proliferation. The codling moth Cydia pomonella is a major pest in apple growing worldwide and adults are known to consume sugars. The impact of floral diets (parsnip, wild carrot, coriander, red clover) on longevity, fecundity and fertility of adult codling moth was examined under laboratory conditions. In general, male moths lived longer than females, regardless of dietary treatments. Moths survived longest when supplied with parsnip flowers as a floral diet. Contrary to carrot, coriander resulted in higher longevity of adult C. pomonella compared to moths provided with red clover as a negative control. Adult nutrition on floral diets did not affect fecundity substantially. As expected, the majority of eggs were laid within the first week. Prolongation of moths' lifespan by floral diets did not significantly increase the total number of eggs laid in contrast to a diet with 25% sucrose solution. According to these results, the risk of inadvertently promoting codling moth when growing selected flowering plants in the orchard will be rather low, because the fitness of the moths and especially the reproduction of the females will not be substantially enhanced.

A dataset on trophic modes of aquatic protists

Background

An important functional trait of organisms is their trophic mode. It determines their position within food webs, as well as their function within an ecosystem. For the better part of the 20^th century, aquatic protist communities were thought to consist mainly of producers (phytoplankton) and consumers (protozooplankton). Phytoplankton cover their energy requirements through photosynthesis (phototrophy), while protozooplankton graze on prey and organic particles (phagotrophy). However, over the past decades, it was shown that another trophic group (mixoplankton) comprise a notable part of aquatic protist communities. Mixoplankton employ a third trophic mode by combining phototrophy and phagotrophy (mixotrophy). Due to the historical dichotomy, it is not straightforward to gain adequate and correct information on the trophic mode of aquatic protists. Long hours of literature research or expert knowledge are needed to correctly assign trophic modes. Additionally, aquatic protists also have a long history of undergoing taxonomic changes which make it difficult to compare past and present literature. While WoRMS, the World Register of Marine Species, keeps track of the taxonomic changes and assigns each species a unique AphiaID that can be linked to its various historic and present taxonomic hierarchy, there is currently no machine-readable database to query aquatic protists for their trophic modes.

New information

This paper describes a dataset that was submitted to WoRMS and links aquatic protist taxa, with a focus on marine taxa, to their AphiaID and their trophic mode. The bulk of the data used for this dataset stems from (routine) monitoring stations in the North Sea and the Baltic Sea. The data were augmented and checked against state-of-the-art knowledge on mixoplankton taxa by consulting literature and experts. Thus, this dataset provides a first attempt to make the trophic mode of aquatic protists easily accessible in both a human- and machine-readable format.

Testing for top-down cascading effects in a biomass-driven ecological network of soil invertebrates

To investigate the structural changes of a food-web architecture, we considered real data coming from a soil food web in one abandoned pasture with former low-pressure agriculture management and we reproduced the corresponding ecological network within a multi-agent fully programmable modeling environment in order to simulate dynamically the cascading effects due to the removal of entire functional guilds.We performed several simulations differing from each other for the functional implications. At the first trophic level, we simulated a removal of the prey, that is, herbivores and microbivores, while at the second trophic level, we simulated a removal of the predators, that is, omnivores and carnivores. The five main guilds were removed either separately or in combination.The alteration in the food-web architecture induced by the removal of entire functional guilds was the highest when the entire second trophic level was removed, while the removal of all microbivores caused an alteration in the food-web structure of less than 5% of the total changes due to the removal of opportunistic and predatory species.Omnivores alone account for the highest shifts in time of the numerical abundances of the remaining species, providing computational evidence of the importance of the degree of omnivory in the stabilization of soil biota.

Managing Floral Resources in Apple Orchards for Pest Control: Ideas, Experiences and Future Directions

Functional biodiversity is of fundamental importance for pest control. Many natural enemies rely on floral resources to complete their life cycle. Farmers need to ensure the availability of suitable and sufficient floral biodiversity. This review summarizes 66 studies on the management of floral biodiversity in apple orchards, published since 1986. Approaches followed different degrees of intervention: short-term practices (mowing regime and weed maintenance, cover crops), establishment of durable ecological infrastructures (perennial flower strips, hedgerows) and re-design of the crop system (intercropping, agroforestry). Although short-term practices did not always target the nutrition of natural enemies by flowering plants, living conditions for them (alternative prey, provision of habitat) were often improved. Perennial flower strips reliably enhanced natural enemies and techniques for their introduction continuously developed. Resident natural enemies and their impact in pest control reacted positively to the introduction of a more diversified vegetation, whereas the response of very mobile organisms was often not directly linked to the measures taken. A careful selection and management of plants with particular traits exploitable by most natural enemies emerged as a key-point for success. Now the elaborated design of such measures needs to be adopted by stakeholders and policy makers to encourage farmers to implement these measures in their orchards.

Habitat management of organic vineyard in Northern Italy: the role of cover plants management on arthropod functional biodiversity

The effect of cover plants on arthropod functional biodiversity was investigated in a vineyard in Northern Italy, through a 3-year field experiment. The following six ground cover plants were tested: Sweet Alyssum; Phacelia; Buckwheat; Faba Bean; Vetch and Oat; control. Arthropods were sampled using different techniques, including collection of leaves, vacuum sampling and sweeping net. Ground cover plant management significantly affected arthropod fauna, including beneficial groups providing ecosystem services like biological control against pests. Many beneficial groups were attracted by ground cover treatments in comparison with control, showing an aggregative numerical response in the plots managed with some of the selected plant species. Alyssum, Buckwheat and 'Vetch and Oat' mixture showed attractiveness on some Hymenoptera parasitoid families, which represented 72.3% of the insects collected by sweeping net and 45.7 by vacuum sampling. Phytoseiidae mites showed a significant increase on leaves of the vineyard plots managed with ground covers, in comparison with control, although they did not show any difference among the treatments. In general, the tested ground cover treatments did not increase dangerous Homoptera populations in comparison with control, with the exception of Alyssum. The potential of ground cover plant management in Italian vineyards is discussed: the overall lack of potential negative effects of the plants tested, combined with an aggregative numerical response for many beneficials, seems to show a potential for their use in Northern Italy vineyards.

Ecosystem multifunctionality in metacommunities

Ecosystem multifunctionality, the simultaneous production of multiple ecosystem functions, depends on community diversity, composition, productivity, and spatial scale. In metacommunities, each of these community properties is affected by how species disperse between local patches to track environmental change. Here we use a consumer-resource metacommunity model of resource competition to show how dispersal affects the link between diversity, composition, and ecosystem multifunctionality. When species differ in their functional traits and environmental niche, metacommunity multifunctionality becomes highly dependent upon dispersal, which allows community diversity to be maintained when environmental conditions change. Dispersal promotes multifunctionality in two ways: (1) species sorting, whereby species track local environmental changes by shifting in space, thus preserving diversity and ensuring high biomass productivity, and (2) mass effects, whereby source-sink dynamics allow species to persist in suboptimal environments, thus increasing local diversity. Changing the rate at which species disperse affects the strength of these metacommunity processes, and so metacommunity multifunctionality exhibits a unimodal relationship with dispersal, peaking when dispersal is intermediate. Species-sorting dynamics also provide spatial insurance whereby compensatory dynamics stabilize the fluctuations of each function through time at the regional scale. However, this does not extend to the local scale, where species sorting results in high temporal variability for each function, even though the overall rates of multifunctionality are high. Our results suggest that metacommunity processes are important determinants of ecosystem multifunctionality, and thus effective management of multiple ecosystem functions requires consideration of landscape connectivity.

Natural enemy-mediated indirect interactions among prey species: potential for enhancing biocontrol services in agroecosystems

Understanding how arthropod pests and their natural enemies interact in complex agroecosystems is essential for pest management programmes. Theory predicts that prey sharing a predator, such as a biological control agent, can indirectly reduce each other's density at equilibrium (apparent competition). From this premise, we (i) discuss the complexity of indirect interactions among pests in agroecosystems and highlight the importance of natural enemy-mediated indirect interactions other than apparent competition, (ii) outline factors that affect the nature of enemy-mediated indirect interactions in the field and (iii) identify the way to manipulate enemy-mediated interactions for biological control. We argue that there is a need to increase the link between community ecology theory and biological control to develop better agroecological methods of crop protection via conservation biological control. In conclusion, we identify (i) interventions to be chosen depending on agroecosystem characteristics and (ii) several lines of research that will improve the potential for enemy-mediated indirect interactions to be applied to biological control.

Land-use and land-management change: relationships with earthworm and fungi communities and soil structural properties

BACKGROUND

Change in land use and management can impact massively on soil ecosystems. Ecosystem engineers and other functional biodiversity in soils can be influenced directly by such change and this in turn can affect key soil functions. Here, we employ meta-analysis to provide a quantitative assessment of the effects of changes in land use and land management across a range of successional/extensification transitions (conventional arable → no or reduced tillage → grassland → wooded land) on community metrics for two functionally important soil taxa, earthworms and fungi. An analysis of the relationships between community change and soil structural properties was also included.

RESULTS

Meta-analysis highlighted a consistent trend of increased earthworm and fungal community abundances and complexity following transitions to lower intensity and later successional land uses. The greatest changes were seen for early stage transitions, such as introduction of reduced tillage regimes and conversion to grassland from arable land. Not all changes, however, result in positive effects on the assessed community metrics. For example, whether woodland conversion positively or negatively affects community size and complexity depends on woodland type and, potentially, the changes in soil properties, such as pH, that may occur during conversion. Alterations in soil communities tended to facilitate subsequent changes in soil structure and hydrology. For example, increasing earthworm abundances and functional group composition were shown to be positively correlated with water infiltration rate (dependent on tillage regime and habitat characteristics); while positive changes in fungal biomass measures were positively associated with soil microaggregate stability.

CONCLUSIONS

These findings raise the potential to manage landscapes to increase ecosystem service provision from soil biota in relation to regulation of soil structure and water flow.

The effect of floral resources on parasitoid and host longevity: prospects for conservation biological control in strawberries

The strawberry tortricid, Acleris comariana Lienig and Zeller (Lepidoptera: Tortricidae) is an important pest in Danish strawberry production. Its most common parasitoid is Copidosoma aretas (Walker) (Hymenoptera: Chalcidoidea: Encyrtidae). To identify selective flowering plants that could be used to increase functional biodiversity, the longevity of C. aretas and its host A. comariana was assessed on 5 flowering species: buckwheat, Fagopyrum esculentum Moench (Caryophyllales: Polygonaceae); borage, Borago officinalis L. (Boraginaceae); strawberry, Fragaria x ananassa Duchesne (Rosales: Rosaceae); phacelia, Phacelia tanacetifolia Bentham (Boraginaceae); and dill, Anethum graveolens L. (Apiales: Apiaceae). Dill was only tested with C. aretas. Sucrose and pollen served as positive controls, and pure water as a negative control. In a subsequent field experiment, A. comariana larval density was assessed at 1, 6, and 11 m distances from buckwheat flower strips in 3 fields. The proportion of field-collected larvae that were parasitized by C. aretas or fungi was assessed. Among the tested floral diets, buckwheat was superior for C. aretas, increasing its longevity by 1.4 times compared to water. Although buckwheat also increased longevity of A. comariana, its longevity and survival on buckwheat, borage, and strawberry was not significantly different, so buckwheat was chosen for field experiments. A. comariana densities in the 3 fields with sown buckwheat flower strips were 0.5, 4.0, and 8.3 larvae per m per row of strawberry respectively. Of the collected larvae, a total of 1%, 39%, and 65% were parasitized by C. aretas, respectively. The density of A. comariana and the proportion parasitized by C. aretas were highly significantly correlated. Distance from floral strips had no significant effect on either A. comariana larval density or on the proportion of individuals parasitized by C. aretas. Few other parasitoids emerged from collected larvae, and no larvae were infected by entomopathogenic fungi. Still, total A. comariana mortality was significantly affected by distance to flower strips, with the highest mortality near the flower strips. As no effect of buckwheat flower strips on C. aretas parasitism was found, the positive effect they had on A. comariana control stems from unknown mortality factors. As literature indicates that buckwheat for flower strips can augment a more complex suite of natural enemies, one such mortality factor could be a non-consumptive predator and/or parasitoid effect, but this requires further study. If confirmed, buckwheat may be utilized together with a selective food plant, once identified.

Coccolithophores: functional biodiversity, enzymes and bioprospecting

Emiliania huxleyi is a single celled, marine phytoplankton with global distribution. As a key species for global biogeochemical cycling, a variety of strains have been amassed in various culture collections. Using a library consisting of 52 strains of E. huxleyi and an 'in house' enzyme screening program, we have assessed the functional biodiversity within this species of fundamental importance to global biogeochemical cycling, whilst at the same time determining their potential for exploitation in biocatalytic applications. Here, we describe the screening of E. huxleyi strains, as well as a coccolithovirus infected strain, for commercially relevant biocatalytic enzymes such as acid/alkali phosphodiesterase, acid/alkali phosphomonoesterase, EC1.1.1-type dehydrogenase, EC1.3.1-type dehydrogenase and carboxylesterase.