Construction of a high-density genetic map and localization of grazing-tolerant QTLs in Medicago falcata L

BACKGROUND

Using genomic DNA from 79 F1 plants resulted from a crossing between parents with strong and weak grazing tolerance in Medicago falcata L., we generated an EcoRI restriction site-associated DNA (RAD) sequencing library. After sequencing and assembly, a high-density genetic map with high-quality SNP markers was constructed, with a total length of 1312.238 cM and an average density of 0.844 SNP/cM.

METHODS

The phenotypic traits of 79 F1 families were observed and the QTLS of 6 traits were analyzed by interval mapping.

RESULTS

Sixty three QTLs were identified for seven traits with LOD values from 3 to 6 and the contribution rates from 15% to 30%. Among the 63 QTLs, 17 were for natural shoot height, 12 for rhizome Length, 10 for Shoot canopy diameter, 9 for Basal plant diameter, 6 for stem number, 5 for absolute shoot height, and 4 for rhizome width. These QTLs were concentrated on LG2, LG4, LG5, LG7, and LG8. LG6 had only 6 QTLs. According to the results of QTL mapping, comparison of reference genomes, and functional annotation, 10 candidate genes that may be related to grazing tolerance were screened. qRT-PCR analysis showed that two candidate genes (LOC11412291 and LOC11440209) may be the key genes related to grazing tolerance of M. falcata.

CONCLUSION

The identified trait-associated QTLs and candidate genes in this study will provide a solid foundation for future molecular breeding for enhanced grazing-tolerance in M. falcata.

The Compensatory Tillering in the Forage Grass Hordeum brevisubulatum After Simulated Grazing of Different Severity

The response of compensatory growth is an important adaptive strategy for plants to grazing. However, most previous studies on compensatory growth of plants focused on the compensation of the biomass or the number of sexual reproductive offspring and neglected the compensatory growth of vegetative reproduction (VR). This is important not only for plant compensatory growth studies, but also for theoretical and practical studies of grassland production. The clonal tussock grass Hordeum brevisubulatum was selected as the research object. Four different clipping severities (unclipping and clipping stubble at heights of 15, 10, and 5 cm) at the jointing stage and flowering stage were implemented to study the effect of simulated grazing. To explore the effect of recovery growth time on plant growth after simulated grazing, three sampling times were used at different recovery times after simulated grazing (1, 3, and 7 weeks). We found that light and moderate grazing severity significantly increased the number of vegetative reproduction modules, the promotion of simulated grazing on the number of vegetative reproduction modules was higher in the jointing stage than the flowering stage, and the increase in simulated grazing severity decreased with prolonged recovery growth time. The number of tillers significantly decreased with the increase in simulated grazing in both the jointing and flowering stages at 1 week after damage, and the decreasing effect weakened with the prolonged recovery growth time. The bud number mainly showed over-compensation, the juvenile tiller number showed complete compensation, and the tiller number showed under-compensation at 1 and 3 weeks after recovery growth. The number of tillers showed complete compensation under different grazing severities in the jointing stage, while it showed under-compensation in the flowering stage at 7 weeks after recovery growth. Our results indicated that different grazing severities in the jointing stage could promote the output of tillers with matter production capacity from vegetative reproduction modules, as well as improve the capability of compensatory growth. Therefore, in plant production, there will be a sustainable development effect on the renewal and productivity of the H. brevisubulatum population, resulting in different grazing severities in the jointing stage.