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Gorur-Shandilya S, Demir M, Long J, Clark DA, Emonet T. Olfactory receptor neurons use gain control and complementary kinetics to encode intermittent odorant stimuli. eLife 2017; 6:e27670. [PMID: 28653907 PMCID: PMC5524537 DOI: 10.7554/elife.27670] [Citation(s) in RCA: 70] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2017] [Accepted: 06/26/2017] [Indexed: 11/13/2022] Open
Abstract
Insects find food and mates by navigating odorant plumes that can be highly intermittent, with intensities and durations that vary rapidly over orders of magnitude. Much is known about olfactory responses to pulses and steps, but it remains unclear how olfactory receptor neurons (ORNs) detect the intensity and timing of natural stimuli, where the absence of scale in the signal makes detection a formidable olfactory task. By stimulating Drosophila ORNs in vivo with naturalistic and Gaussian stimuli, we show that ORNs adapt to stimulus mean and variance, and that adaptation and saturation contribute to naturalistic sensing. Mean-dependent gain control followed the Weber-Fechner relation and occurred primarily at odor transduction, while variance-dependent gain control occurred at both transduction and spiking. Transduction and spike generation possessed complementary kinetic properties, that together preserved the timing of odorant encounters in ORN spiking, regardless of intensity. Such scale-invariance could be critical during odor plume navigation.
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Li Z, Yipintsoi T, Bassingthwaighte JB. Nonlinear model for capillary-tissue oxygen transport and metabolism. Ann Biomed Eng 1997; 25:604-19. [PMID: 9236974 PMCID: PMC3589573 DOI: 10.1007/bf02684839] [Citation(s) in RCA: 44] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Oxygen consumption in small tissue regions cannot be measured directly, but assessment of oxygen transport and metabolism at the regional level is possible with imaging techniques using tracer 15O-oxygen for positron emission tomography. On the premise that mathematical modeling of tracer kinetics is the key to the interpretation of regional concentration-time curves, an axially-distributed capillary-tissue model was developed that accounts for oxygen convection in red blood cells and plasma, nonlinear binding to hemoglobin and myoglobin, transmembrane transport among red blood cells, plasma, interstitial fluid and parenchymal cells, axial dispersion, transformation to water in the tissue, and carriage of the reaction product into venous effluent. Computational speed was maximized to make the model useful for routine analysis of experimental data. The steady-state solution of a parent model for nontracer oxygen governs the solutions for parallel-linked models for tracer oxygen and tracer water. The set of models provides estimates of oxygen consumption, extraction, and venous pO2 by fitting model solutions to experimental tracer curves of the regional tissue content or venous outflow. The estimated myocardial oxygen consumption for the whole heart was in good agreement with that measured directly by the Fick method and was relatively insensitive to noise. General features incorporated in the model make it widely applicable to estimating oxygen consumption in other organs from data obtained by external detection methods such as positron emission tomography.
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Zanos TP, Courellis SH, Berger TW, Hampson RE, Deadwyler SA, Marmarelis VZ. Nonlinear modeling of causal interrelationships in neuronal ensembles. IEEE Trans Neural Syst Rehabil Eng 2008; 16:336-52. [PMID: 18701382 PMCID: PMC2729787 DOI: 10.1109/tnsre.2008.926716] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
The increasing availability of multiunit recordings gives new urgency to the need for effective analysis of "multidimensional" time-series data that are derived from the recorded activity of neuronal ensembles in the form of multiple sequences of action potentials--treated mathematically as point-processes and computationally as spike-trains. Whether in conditions of spontaneous activity or under conditions of external stimulation, the objective is the identification and quantification of possible causal links among the neurons generating the observed binary signals. A multiple-input/multiple-output (MIMO) modeling methodology is presented that can be used to quantify the neuronal dynamics of causal interrelationships in neuronal ensembles using spike-train data recorded from individual neurons. These causal interrelationships are modeled as transformations of spike-trains recorded from a set of neurons designated as the "inputs" into spike-trains recorded from another set of neurons designated as the "outputs." The MIMO model is composed of a set of multiinput/single-output (MISO) modules, one for each output. Each module is the cascade of a MISO Volterra model and a threshold operator generating the output spikes. The Laguerre expansion approach is used to estimate the Volterra kernels of each MISO module from the respective input-output data using the least-squares method. The predictive performance of the model is evaluated with the use of the receiver operating characteristic (ROC) curve, from which the optimum threshold is also selected. The Mann-Whitney statistic is used to select the significant inputs for each output by examining the statistical significance of improvements in the predictive accuracy of the model when the respective inputs is included. Illustrative examples are presented for a simulated system and for an actual application using multiunit data recordings from the hippocampus of a behaving rat.
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Zecchin C, Facchinetti A, Sparacino G, Cobelli C. How Much Is Short-Term Glucose Prediction in Type 1 Diabetes Improved by Adding Insulin Delivery and Meal Content Information to CGM Data? A Proof-of-Concept Study. J Diabetes Sci Technol 2016; 10:1149-60. [PMID: 27381030 PMCID: PMC5032963 DOI: 10.1177/1932296816654161] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
BACKGROUND In type 1 diabetes (T1D) management, short-term glucose prediction can allow to anticipate therapeutic decisions when hypo/hyperglycemia is imminent. Literature prediction methods mainly use past continuous glucose monitoring (CGM) readings. Sophisticated algorithms can use information on insulin delivered and meal carbohydrate (CHO) content. The quantification of how much insulin and CHO information improves glucose prediction is missing in the literature and is investigated, in an open-loop setting, in this proof-of-concept study. METHODS We adopted a versatile literature prediction methodology able to utilize a variety of inputs. We compared predictors that use (1) CGM; (2) CGM and insulin; (3) CGM and CHO; and (4) CGM, insulin, and CHO. Data of 15 T1D subjects in open-loop setup were used. Prediction was evaluated via absolute error and temporal gain focusing on meal/night periods. The relative importance of each individual input of the predictor was evaluated with a sensitivity analysis. RESULTS For a prediction horizon (PH) ≥ 30 minutes, insulin and CHO information improves prediction accuracy of 10% and double the temporal gain during the 2 hours following the meal. During the night the 4 methods did not give statistically different results. When PH ≥ 45 minutes, the influence of CHO information on prediction is 5-fold that of insulin. CONCLUSIONS In an open-loop setting, with PH ≥ 30 minutes, information on CHO and insulin improves short-term glucose prediction in the 2-hour time window following a meal, but not during the night. CHO information improves prediction significantly more than insulin.
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Dziak JJ, Li R, Tan X, Shiffman S, Shiyko MP. Modeling intensive longitudinal data with mixtures of nonparametric trajectories and time-varying effects. Psychol Methods 2015; 20:444-69. [PMID: 26390169 PMCID: PMC4679529 DOI: 10.1037/met0000048] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Behavioral scientists increasingly collect intensive longitudinal data (ILD), in which phenomena are measured at high frequency and in real time. In many such studies, it is of interest to describe the pattern of change over time in important variables as well as the changing nature of the relationship between variables. Individuals' trajectories on variables of interest may be far from linear, and the predictive relationship between variables of interest and related covariates may also change over time in a nonlinear way. Time-varying effect models (TVEMs; see Tan, Shiyko, Li, Li, & Dierker, 2012) address these needs by allowing regression coefficients to be smooth, nonlinear functions of time rather than constants. However, it is possible that not only observed covariates but also unknown, latent variables may be related to the outcome. That is, regression coefficients may change over time and also vary for different kinds of individuals. Therefore, we describe a finite mixture version of TVEM for situations in which the population is heterogeneous and in which a single trajectory would conceal important, interindividual differences. This extended approach, MixTVEM, combines finite mixture modeling with non- or semiparametric regression modeling, to describe a complex pattern of change over time for distinct latent classes of individuals. The usefulness of the method is demonstrated in an empirical example from a smoking cessation study. We provide a versatile SAS macro and R function for fitting MixTVEMs.
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33 |
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Khanna NN, Jamthikar AD, Araki T, Gupta D, Piga M, Saba L, Carcassi C, Nicolaides A, Laird JR, Suri HS, Gupta A, Mavrogeni S, Kitas GD, Suri JS. Nonlinear model for the carotid artery disease 10-year risk prediction by fusing conventional cardiovascular factors to carotid ultrasound image phenotypes: A Japanese diabetes cohort study. Echocardiography 2019; 36:345-361. [PMID: 30623485 DOI: 10.1111/echo.14242] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2018] [Accepted: 12/04/2018] [Indexed: 12/11/2022] Open
Abstract
MOTIVATION This study presents a novel nonlinear model which can predict 10-year carotid ultrasound image-based phenotypes by fusing nine traditional cardiovascular risk factors (ethnicity, gender, age, artery type, body mass index, hemoglobin A1c, hypertension, low-density lipoprotein, and smoking) with five types of carotid automated image phenotypes (three types of carotid intima-media thickness (IMT), wall variability, and total plaque area). METHODOLOGY Two-step process was adapted: First, five baseline carotid image-based phenotypes were automatically measured using AtheroEdge™ (AtheroPoint™ , CA, USA) system by two operators (novice and experienced) and an expert. Second, based on the annual progression rates of cIMT due to nine traditional cardiovascular risk factors, a novel nonlinear model was adapted for 10-year predictions of carotid phenotypes. RESULTS Institute review board (IRB) approved 204 Japanese patients' left/right common carotid artery (407 ultrasound scans) was collected with a mean age of 69 ± 11 years. Age and hemoglobin were reported to have a high influence on the 10-year carotid phenotypes. Mean correlation coefficient (CC) between 10-year carotid image-based phenotype and age was improved by 39.35% in males and 25.38% in females. The area under the curves for the 10-year measurements of five phenotypes IMTave10yr , IMTmax10yr , IMTmin10yr , IMTV10yr , and TPA10yr were 0.96, 0.94, 0.90, 1.0, and 1.0. Inter-operator variability between two operators showed significant CC (P < 0.0001). CONCLUSIONS A nonlinear model was developed and validated by fusing nine conventional CV risk factors with current carotid image-based phenotypes for predicting the 10-year carotid ultrasound image-based phenotypes which may be used risk assessment.
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Song D, Marmarelis VZ, Berger TW. Parametric and non-parametric modeling of short-term synaptic plasticity. Part I: Computational study. J Comput Neurosci 2009; 26:1-19. [PMID: 18506609 PMCID: PMC2770349 DOI: 10.1007/s10827-008-0097-3] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2007] [Revised: 04/08/2008] [Accepted: 05/01/2008] [Indexed: 12/01/2022]
Abstract
Parametric and non-parametric modeling methods are combined to study the short-term plasticity (STP) of synapses in the central nervous system (CNS). The nonlinear dynamics of STP are modeled by means: (1) previously proposed parametric models based on mechanistic hypotheses and/or specific dynamical processes, and (2) non-parametric models (in the form of Volterra kernels) that transforms the presynaptic signals into postsynaptic signals. In order to synergistically use the two approaches, we estimate the Volterra kernels of the parametric models of STP for four types of synapses using synthetic broadband input-output data. Results show that the non-parametric models accurately and efficiently replicate the input-output transformations of the parametric models. Volterra kernels provide a general and quantitative representation of the STP.
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Zhang X, Guo X, Guo F, Lai KH. Nonlinearities in personalization-privacy paradox in mHealth adoption: the mediating role of perceived usefulness and attitude. Technol Health Care 2015; 22:515-29. [PMID: 24763205 DOI: 10.3233/thc-140811] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
BACKGROUND AND OBJECTIVE Personalization in healthcare refers to individualizing services and products based on patients' health conditions and interests. In order to deliver highly personalized offerings, mHealth providers need to use patients' health information, which provokes patients' concerns over personal health information leakage. So the personalization-privacy paradox is an important issue in the mHealth context. To gain a better understanding of this paradox, we take the personalization and privacy paradox factors as independent variables, incorporating the nonlinear relationships between personalization and privacy, and take attitude and perceived usefulness as middle variables to study mHealth adoption. METHODS The hypothesized model is tested through an empirical research of a 489-respondent sample in China. PLS is used for data analysis. KEY FINDINGS (1) Personalization and privacy are found to influence mHealth adoption intention via attitude and perceived usefulness; (2) there is a substitution relationship, also called negative synergy between personalization and privacy in mHealth contexts; (3) attitude mediates the effect of perceived usefulness on intention, indicating a significant role of attitude.
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He F, Sarrigiannis PG, Billings SA, Wei H, Rowe J, Romanowski C, Hoggard N, Hadjivassilliou M, Rao DG, Grünewald R, Khan A, Yianni J. Nonlinear interactions in the thalamocortical loop in essential tremor: A model-based frequency domain analysis. Neuroscience 2016; 324:377-89. [PMID: 26987955 DOI: 10.1016/j.neuroscience.2016.03.028] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2016] [Revised: 02/21/2016] [Accepted: 03/08/2016] [Indexed: 10/22/2022]
Abstract
There is increasing evidence to suggest that essential tremor has a central origin. Different structures appear to be part of the central tremorogenic network, including the motor cortex, the thalamus and the cerebellum. Some studies using electroencephalogram (EEG) and magnetoencephalography (MEG) show linear association in the tremor frequency between the motor cortex and the contralateral tremor electromyography (EMG). Additionally, high thalamomuscular coherence is found with the use of thalamic local field potential (LFP) recordings and tremulous EMG in patients undergoing surgery for deep brain stimulation (DBS). Despite a well-established reciprocal anatomical connection between the thalamus and cortex, the functional association between the two structures during "tremor-on" periods remains elusive. Thalamic (Vim) LFPs, ipsilateral scalp EEG from the sensorimotor cortex and contralateral tremor arm EMG recordings were obtained from two patients with essential tremor who had undergone successful surgery for DBS. Coherence analysis shows a strong linear association between thalamic LFPs and contralateral tremor EMG, but the relationship between the EEG and the thalamus is much less clear. These measurements were then analyzed by constructing a novel parametric nonlinear autoregressive with exogenous input (NARX) model. This new approach uncovered two distinct and not overlapping frequency "channels" of communication between Vim thalamus and the ipsilateral motor cortex, defining robustly "tremor-on" versus "tremor-off" states. The associated estimated nonlinear time lags also showed non-overlapping values between the two states, with longer corticothalamic lags (exceeding 50ms) in the tremor active state, suggesting involvement of an indirect multisynaptic loop. The results reveal the importance of the nonlinear interactions between cortical and subcortical areas in the central motor network of essential tremor. This work is important because it demonstrates for the first time that in essential tremor the functional interrelationships between the cortex and thalamus should not be sought exclusively within individual frequencies but more importantly between cross-frequency nonlinear interactions. Should our results be successfully reproduced on a bigger cohort of patients with essential tremor, our approach could be used to create an on-demand closed-loop DBS device, able to automatically activate when the tremor is on.
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Song D, Wang Z, Marmarelis VZ, Berger TW. Parametric and non-parametric modeling of short-term synaptic plasticity. Part II: Experimental study. J Comput Neurosci 2009; 26:21-37. [PMID: 18504530 PMCID: PMC2749717 DOI: 10.1007/s10827-008-0098-2] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2007] [Revised: 04/08/2008] [Accepted: 05/01/2008] [Indexed: 11/29/2022]
Abstract
This paper presents a synergistic parametric and non-parametric modeling study of short-term plasticity (STP) in the Schaffer collateral to hippocampal CA1 pyramidal neuron (SC) synapse. Parametric models in the form of sets of differential and algebraic equations have been proposed on the basis of the current understanding of biological mechanisms active within the system. Non-parametric Poisson-Volterra models are obtained herein from broadband experimental input-output data. The non-parametric model is shown to provide better prediction of the experimental output than a parametric model with a single set of facilitation/depression (FD) process. The parametric model is then validated in terms of its input-output transformational properties using the non-parametric model since the latter constitutes a canonical and more complete representation of the synaptic nonlinear dynamics. Furthermore, discrepancies between the experimentally-derived non-parametric model and the equivalent non-parametric model of the parametric model suggest the presence of multiple FD processes in the SC synapses. Inclusion of an additional set of FD process in the parametric model makes it replicate better the characteristics of the experimentally-derived non-parametric model. This improved parametric model in turn provides the requisite biological interpretability that the non-parametric model lacks.
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Research Support, N.I.H., Extramural |
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Nguyen TNH, Jin X, Nolan JK, Xu J, Le KVH, Lam S, Wang Y, Alam MA, Lee H. Printable Nonenzymatic Glucose Biosensors Using Carbon Nanotube-PtNP Nanocomposites Modified with AuRu for Improved Selectivity. ACS Biomater Sci Eng 2020; 6:5315-5325. [PMID: 33455280 DOI: 10.1021/acsbiomaterials.0c00647] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Nonenzymatic glucose biosensors have the potential for a more reliable in vivo functionality due to the reduced risk of biorecognition element degradation. However, these novel sensing mechanisms often are nanoparticle-based and have nonlinear responses, which makes it difficult to gauge their potential utility against more conventional enzymatic biosensors. Moreover, these nonenzymatic biosensors often suffer from poor selectivity that needs to be better addressed before being used in vivo. To address these problems, here we present an amperometric nonenzymatic glucose biosensor fabricated using one-step electrodeposition of Au and Ru nanoparticles on the surface of a carbon-nanotube-based platinum-nanoparticle hybrid in conductive polymer. Using benchtop evaluations, we demonstrate that the bimetallic catalyst of Au-Ru nanoparticles can enable the nonenzymatic detection of glucose with a superior performance and stability. Furthermore, our biosensor shows good selectivity against other interferents, with a nonlinear dynamic range of 1-19 mM glucose. The Au-Ru catalyst has a conventional linear range of 1-10 mM, with a sensitivity of 0.2347 nA/(μM mm2) ± 0.0198 (n = 3) and a limit of detection of 0.068 mM (signal-to-noise, S/N = 3). The biosensor also exhibits a good repeatability and stability at 37 °C over a 3 week incubation period. Finally, we use a modified Butler-Volmer nonlinear analytical model to evaluate the impact of geometrical and chemical design parameters on our nonenzymatic biosensor's performance, which may be used to help optimize the performance of this class of biosensors.
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Georgieva A, Ilieva Y, Kokanova-Nedialkova Z, Zaharieva MM, Nedialkov P, Dobreva A, Kroumov A, Najdenski H, Mileva M. Redox-Modulating Capacity and Antineoplastic Activity of Wastewater Obtained from the Distillation of the Essential Oils of Four Bulgarian Oil-Bearing Roses. Antioxidants (Basel) 2021; 10:antiox10101615. [PMID: 34679750 PMCID: PMC8533594 DOI: 10.3390/antiox10101615] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Revised: 10/03/2021] [Accepted: 10/04/2021] [Indexed: 01/31/2023] Open
Abstract
The wastewater from the distillation of rose oils is discharged directly into the soil because it has a limited potential for future applications. The aim of the present study was to determine in vitro the chromatographic profile, redox-modulating capacity, and antineoplastic activity of wastewater obtained by distillation of essential oils from the Bulgarian Rosa alba L., Rosa damascena Mill., Rosa gallica L., and Rosa centifolia L. We applied UHPLC-HRMS for chromatographic analysis of rose wastewaters, studied their metal-chelating and Fe(III)-reducing ability, and performed MTT assay for the evaluation of cytotoxic potential against three tumorigenic (HEPG2-hepatocellular adenocarcinoma, A-375-malignant melanoma, A-431-non-melanoma epidermoid squamous skin carcinoma) and one non-tumorigenic human cell lines (HaCaT-immortalized keratinocytes). The median inhibitory concentrations (IC50) were calculated with nonlinear modeling using the MAPLE® platform. The potential of the wastewaters to induce apoptosis was also examined. Mono-, di-, and acylated glycosides of quercetin and kaempferol, ellagic acid and its derivatives as main chemical components, and gallic acid and its derivatives-such as catechin and epicatechin-were identified. The redox-modulating capacity of the samples (TPTZ test) showed that all four wastewaters exhibited the properties of excellent heavy metal cleaners, but did not exert very strong cytotoxic effects. The lowest IC50 rate was provided in wastewater from R. centifolia (34-35 µg/mL of gallic acid equivalents after a 72 h period for all cell lines). At 24 and 48 hours, the most resistant cell line was HEPG2, followed by HaCaT. After 72 h of exposure, the IC50 values were similar for tumor and normal cells. Still, R. damascena had a selectivity index over 2.0 regarding A-431 non-melanoma skin cancer cells, showing a good toxicological safety profile in addition to moderate activity-IC50 of 35 µg/mL polyphenols. The obtained results related to wastewaters acquired after the distillation of essential oils from the Bulgarian R. alba, R. damascena, R. gallica, and R. centifolia direct our attention to further studies for in-depth elucidation of their application as detoxifying agents under oxidative damage conditions in other experimental datasets.
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Dimoka A, Courellis SH, Gholmieh GI, Marmarelis VZ, Berger TW. Modeling the nonlinear properties of the in vitro hippocampal perforant path-dentate system using multielectrode array technology. IEEE Trans Biomed Eng 2008; 55:693-702. [PMID: 18270006 PMCID: PMC2749727 DOI: 10.1109/tbme.2007.908075] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
A modeling approach to characterize the nonlinear dynamic transformations of the dentate gyrus of the hippocampus is presented and experimentally validated. The dentate gyrus is the first region of the hippocampus which receives and integrates sensory information via the perforant path. The perforant path is composed of two distinct pathways: 1) the lateral path and 2) the medial perforant path. The proposed approach examines and captures the short-term dynamic characteristics of these two pathways using a nonparametric, third-order Poisson-Volterra model. The nonlinear characteristics of the two pathways are represented by Poisson-Volterra kernels, which are quantitative descriptors of the nonlinear dynamic transformations. The kernels were computed with experimental data from in vitro hippocampal slices. The electrophysiological activity was measured with custom-made multielectrode arrays, which allowed selective stimulation with random impulse trains and simultaneous recordings of extracellular field potential activity. The results demonstrate that this mathematically rigorous approach is suitable for the multipathway complexity of the hippocampus and yields interpretable models that have excellent predictive capabilities. The resulting models not only accurately predict previously reported electrophysiological descriptors, such as paired pulses, but more important, can be used to predict the electrophysiological activity of dentate granule cells to arbitrary stimulation patterns at the perforant path.
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Parino F, Zino L, Calafiore GC, Rizzo A. A model predictive control approach to optimally devise a two-dose vaccination rollout: A case study on COVID-19 in Italy. INTERNATIONAL JOURNAL OF ROBUST AND NONLINEAR CONTROL 2021; 33:RNC5728. [PMID: 34908815 PMCID: PMC8661761 DOI: 10.1002/rnc.5728] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2021] [Revised: 07/23/2021] [Accepted: 07/28/2021] [Indexed: 05/26/2023]
Abstract
The COVID-19 pandemic has led to the unprecedented challenge of devising massive vaccination rollouts, toward slowing down and eventually extinguishing the diffusion of the virus. The two-dose vaccination procedure, speed requirements, and the scarcity of doses, suitable spaces, and personnel, make the optimal design of such rollouts a complex problem. Mathematical modeling, which has already proved to be determinant in the early phases of the pandemic, can again be a powerful tool to assist public health authorities in optimally planning the vaccination rollout. Here, we propose a novel epidemic model tailored to COVID-19, which includes the effect of nonpharmaceutical interventions and a concurrent two-dose vaccination campaign. Then, we leverage nonlinear model predictive control to devise optimal scheduling of first and second doses, accounting both for the healthcare needs and for the socio-economic costs associated with the epidemics. We calibrate our model to the 2021 COVID-19 vaccination campaign in Italy. Specifically, once identified the epidemic parameters from officially reported data, we numerically assess the effectiveness of the obtained optimal vaccination rollouts for the two most used vaccines. Determining the optimal vaccination strategy is nontrivial, as it depends on the efficacy and duration of the first-dose partial immunization, whereby the prioritization of first doses and the delay of second doses may be effective for vaccines with sufficiently strong first-dose immunization. Our model and optimization approach provide a flexible tool that can be adopted to help devise the current COVID-19 vaccination campaign, and increase preparedness for future epidemics.
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Kang Y, Escudero J, Shin D, Ifeachor E, Marmarelis V. Principal Dynamic Mode Analysis of EEG Data for Assisting the Diagnosis of Alzheimer's Disease. IEEE JOURNAL OF TRANSLATIONAL ENGINEERING IN HEALTH AND MEDICINE-JTEHM 2015; 3:1800110. [PMID: 27170890 PMCID: PMC4848106 DOI: 10.1109/jtehm.2015.2401005] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/24/2014] [Revised: 10/06/2014] [Accepted: 01/04/2015] [Indexed: 11/10/2022]
Abstract
We examine whether modeling of the causal dynamic relationships between frontal and occipital electroencephalogram (EEG) time-series recordings reveal reliable differentiating characteristics of Alzheimer’s patients versus control subjects in a manner that may assist clinical diagnosis of Alzheimer’s disease (AD). The proposed modeling approach utilizes the concept of principal dynamic modes (PDMs) and their associated nonlinear functions (ANF) and hypothesizes that the ANFs of some PDMs for the AD patients will be distinct from their counterparts in control subjects. To this purpose, global PDMs are extracted from 1-min EEG signals of 17 AD patients and 24 control subjects at rest using Volterra models estimated via Laguerre expansions, whereby the O1 or O2 recording is viewed as the input signal and the F3 or F4 recording as the output signal. Subsequent singular value decomposition of the estimated Volterra kernels yields the global PDMs that represent an efficient basis of functions for the representation of the EEG dynamics in all subjects. The respective ANFs are computed for each subject and characterize the specific dynamics of each subject. For comparison, signal features traditionally used in the analysis of EEG signals in AD are computed as benchmark. The results indicate that the ANFs of two specific PDMs, corresponding to the delta–theta and alpha bands, can delineate the two groups well.
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Marmarelis VZ, Zanos TP, Berger TW. Boolean modeling of neural systems with point-process inputs and outputs. Part I: theory and simulations. Ann Biomed Eng 2009; 37:1654-67. [PMID: 19517238 PMCID: PMC2917726 DOI: 10.1007/s10439-009-9736-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2008] [Accepted: 06/04/2009] [Indexed: 11/25/2022]
Abstract
This paper presents a new modeling approach for neural systems with point-process (spike) inputs and outputs that utilizes Boolean operators (i.e. modulo 2 multiplication and addition that correspond to the logical AND and OR operations respectively, as well as the AND_NOT logical operation representing inhibitory effects). The form of the employed mathematical models is akin to a "Boolean-Volterra" model that contains the product terms of all relevant input lags in a hierarchical order, where terms of order higher than first represent nonlinear interactions among the various lagged values of each input point-process or among lagged values of various inputs (if multiple inputs exist) as they reflect on the output. The coefficients of this Boolean-Volterra model are also binary variables that indicate the presence or absence of the respective term in each specific model/system. Simulations are used to explore the properties of such models and the feasibility of their accurate estimation from short data-records in the presence of noise (i.e. spurious spikes). The results demonstrate the feasibility of obtaining reliable estimates of such models, with excitatory and inhibitory terms, in the presence of considerable noise (spurious spikes) in the outputs and/or the inputs in a computationally efficient manner. A pilot application of this approach to an actual neural system is presented in the companion paper (Part II).
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Eikenberry SE, Marmarelis VZ. Principal dynamic mode analysis of the Hodgkin-Huxley equations. Int J Neural Syst 2014; 25:1550001. [PMID: 25630480 DOI: 10.1142/s012906571550001x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
We develop an autoregressive model framework based on the concept of Principal Dynamic Modes (PDMs) for the process of action potential (AP) generation in the excitable neuronal membrane described by the Hodgkin-Huxley (H-H) equations. The model's exogenous input is injected current, and whenever the membrane potential output exceeds a specified threshold, it is fed back as a second input. The PDMs are estimated from the previously developed Nonlinear Autoregressive Volterra (NARV) model, and represent an efficient functional basis for Volterra kernel expansion. The PDM-based model admits a modular representation, consisting of the forward and feedback PDM bases as linear filterbanks for the exogenous and autoregressive inputs, respectively, whose outputs are then fed to a static nonlinearity composed of polynomials operating on the PDM outputs and cross-terms of pair-products of PDM outputs. A two-step procedure for model reduction is performed: first, influential subsets of the forward and feedback PDM bases are identified and selected as the reduced PDM bases. Second, the terms of the static nonlinearity are pruned. The first step reduces model complexity from a total of 65 coefficients to 27, while the second further reduces the model coefficients to only eight. It is demonstrated that the performance cost of model reduction in terms of out-of-sample prediction accuracy is minimal. Unlike the full model, the eight coefficient pruned model can be easily visualized to reveal the essential system components, and thus the data-derived PDM model can yield insight into the underlying system structure and function.
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Kim S, Im S, Park T. Characterization of Quadratic Nonlinearity between Motion Artifact and Acceleration Data and its Application to Heartbeat Rate Estimation. SENSORS (BASEL, SWITZERLAND) 2017; 17:E1872. [PMID: 28805751 PMCID: PMC5579923 DOI: 10.3390/s17081872] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/09/2017] [Revised: 07/31/2017] [Accepted: 08/13/2017] [Indexed: 12/04/2022]
Abstract
Accelerometers are applied to various applications to collect information about movements of other sensors deployed at diverse fields ranging from underwater area to human body. In this study, we try to characterize the nonlinear relationship between motion artifact and acceleration data. The cross bicoherence test and the Volterra filter are used as the approaches to detection and modeling. We use the cross bicoherence test to directly detect in the frequency domain and we indirectly identify the nonlinear relationship by improving the performance of eliminating motion artifact in heartbeat rate estimation using a nonlinear filter, the second-order Volterra filter. In the experiments, significant bicoherence values are observed through the cross bicoherence test between the photoplethysmogram (PPG) signal contaminated with motion artifact and the acceleration sensor data. It is observed that for each dataset, the heartbeat rate estimation based on the Volterra filter is superior to that of the linear filter in terms of average absolute error. Furthermore, the leave one out cross-validation (LOOCV) is employed to develop an optimal structure of the Volterra filter for the total datasets. Due to lack of data, the developed Volterra filter does not demonstrate significant difference from the optimal linear filter in terms of t-test. Through this study, it can be concluded that motion artifact may have a quadaratical relationship with acceleration data in terms of bicoherence and more experimental data are required for developing a robust and efficient model for the relationship.
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Li JCH. Probability-of-Superiority SEM (PS-SEM)-Detecting Probability-Based Multivariate Relationships in Behavioral Research. Front Psychol 2018; 9:883. [PMID: 29951012 PMCID: PMC6008517 DOI: 10.3389/fpsyg.2018.00883] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2017] [Accepted: 05/15/2018] [Indexed: 12/02/2022] Open
Abstract
In behavioral research, exploring bivariate relationships between variables X and Y based on the concept of probability-of-superiority (PS) has received increasing attention. Unlike the conventional, linear-based bivariate relationship (e.g., Pearson's correlation), PS defines that X and Y can be related based on their likelihood—e.g., a student who is above mean in SAT has 63% likelihood of achieving an above-mean college GPA. Despite its increasing attention, the concept of PS is restricted to a simple bivariate scenario (X-Y pair), which hinders the development and application of PS in popular multivariate modeling such as structural equation modeling (SEM). Therefore, this study addresses an empirical-based simulation study that explores the potential of detecting PS-based relationship in SEM, called PS-SEM. The simulation results showed that the proposed PS-SEM method can detect and identify PS-based when data follow PS-based relationships, thereby providing a useful method for researchers to explore PS-based SEM in their studies. Conclusions, implications, and future directions based on the findings are also discussed.
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Carles S, Charles MA, Heude B, Ahmed I, Botton J. Joint Bayesian weight and height postnatal growth model to study the effects of maternal smoking during pregnancy. Stat Med 2017; 36:3990-4006. [PMID: 28795415 DOI: 10.1002/sim.7407] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2016] [Revised: 05/10/2017] [Accepted: 06/19/2017] [Indexed: 11/09/2022]
Abstract
Growth models used for describing the dynamics of body weight and height generally consider each trait independently. We proposed modeling height and weight trajectories jointly with a nonlinear heteroscedastic mixed model based on the Jenss-Bayley growth function with correlated individual random effects and using Bayesian inference techniques. Simulations showed that our model provides good estimates of the growth parameters. We illustrated how it can be used to assess the associations between maternal smoking during pregnancy, an early-life factor potentially involved in prenatal programming of obesity, and children's growth from birth to 5 years of age. We used real data from the EDEN study, a large French mother-child cohort study with a high number of height and weight measurements (a total of approximately 30 000 measurements for each of the 2 traits across the 1666 children). Our results supported the existence of a relationship between maternal smoking during pregnancy and growth from birth to 5 years of age. Children from mothers who smoked throughout pregnancy were shown to display a higher body mass index from the first few months of life onwards compared to children from nonsmokers. At 5 years of age, their mean body mass index was 0.21 kg/m2 higher than unexposed children. It was mainly explained by the fact that these children tended to be smaller at birth but rapidly exceeded the weight of children from nonsmokers postnatally.
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Keith SW, Allison DB. A free-knot spline modeling framework for piecewise linear logistic regression in complex samples with body mass index and mortality as an example. Front Nutr 2014; 2014:00016. [PMID: 25610831 PMCID: PMC4297674 DOI: 10.3389/fnut.2014.00016] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2014] [Accepted: 09/09/2014] [Indexed: 11/13/2022] Open
Abstract
This paper details the design, evaluation, and implementation of a framework for detecting and modeling nonlinearity between a binary outcome and a continuous predictor variable adjusted for covariates in complex samples. The framework provides familiar-looking parameterizations of output in terms of linear slope coefficients and odds ratios. Estimation methods focus on maximum likelihood optimization of piecewise linear free-knot splines formulated as B-splines. Correctly specifying the optimal number and positions of the knots improves the model, but is marked by computational intensity and numerical instability. Our inference methods utilize both parametric and nonparametric bootstrapping. Unlike other nonlinear modeling packages, this framework is designed to incorporate multistage survey sample designs common to nationally representative datasets. We illustrate the approach and evaluate its performance in specifying the correct number of knots under various conditions with an example using body mass index (BMI; kg/m2) and the complex multi-stage sampling design from the Third National Health and Nutrition Examination Survey to simulate binary mortality outcomes data having realistic nonlinear sample-weighted risk associations with BMI. BMI and mortality data provide a particularly apt example and area of application since BMI is commonly recorded in large health surveys with complex designs, often categorized for modeling, and nonlinearly related to mortality. When complex sample design considerations were ignored, our method was generally similar to or more accurate than two common model selection procedures, Schwarz's Bayesian Information Criterion (BIC) and Akaike's Information Criterion (AIC), in terms of correctly selecting the correct number of knots. Our approach provided accurate knot selections when complex sampling weights were incorporated, while AIC and BIC were not effective under these conditions.
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Barzegar S, Zamani AA, Abbasi S, Vafaei Shooshtari R, Shirvani Farsani N. Temperature-Dependent Development Modeling of the Phorid Fly Megaselia halterata (Wood) (Diptera: Phoridae). NEOTROPICAL ENTOMOLOGY 2016; 45:507-517. [PMID: 27147228 DOI: 10.1007/s13744-016-0400-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2015] [Accepted: 04/05/2016] [Indexed: 06/05/2023]
Abstract
The effect of temperature on the development of Megaselia halterata (Wood) (Diptera: Phoridae) on A15 variety of button mushroom in the stages of casing and spawn-running was investigated at eight constant temperatures (10, 12.5, 15, 18, 20, 22.5, 25, and 27°C) and developmental rates were modeled as a function of temperature. At 25 and 27°C, an average of 22.2 ± 0.14 and 20.0 ± 0.10 days was needed for M. halterata to complete its development from oviposition to adult eclosion in the stages of casing and spawn-running, respectively. The developmental times of males or females at various constant temperatures were significantly different. Among the linear models, the Ikemoto and Takai linear model in the absence of 12.5 and 25°C showed the best statistical goodness-of-fit and based on this model, the lower developmental threshold and the thermal constant were estimated as 10.4°C and 526.3 degree-days, respectively. Twelve nonlinear temperature-dependent models were examined to find the best model to describe the relationship between temperature and development rate of M. halterata. The Logan 10 nonlinear model provided the best estimation for T opt and T max and is strongly recommended for the description of temperature-dependent development of M. halterata.
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Salan MSA, Ali A, Amin R, Sultana A, Naznin M, Kabir MA, Hossain MM. Evaluation of the Impact of Selected Financial Indicators on Foreign Direct Investment in Bangladesh: A Nonlinear Modeling Approach. ScientificWorldJournal 2025; 2025:4406958. [PMID: 40292181 PMCID: PMC12031603 DOI: 10.1155/tswj/4406958] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2024] [Accepted: 04/03/2025] [Indexed: 04/30/2025] Open
Abstract
Background: Foreign direct investment (FDI) is a steadfast contributor to capital flows and plays an indispensable role in driving economic advancement and emerging as a pivotal avenue for financing growth in Bangladesh. Therefore, this study identifies the factors that influence FDI inflows in Bangladesh. Moreover, the authors explored the more appropriate model for predicting FDI by comparing the efficacy of other models' predictions. Methods: This study is based on secondary data over the period 1973 to 2021 and collected from the publicly accessible website of the World Bank. A generalized additive model (GAM) was implemented for describing the proper splines. The model's performance was assessed using the modified R-squared, the Bayesian information criterion (BIC), and the Akaike information criterion (AIC). Results: Findings depict a significant nonlinear relationship between Bangladesh's FDI and key economic indicators, including GDP, trade openness, external debt, gross capital formation, gross national income (GNI) and government rates of exchange, total reserves, and total natural resource rent. It is also observed that the GAM (R 2 = 0.987, AIC = 608.03, and BIC = 658.28) outperforms multiple linear regressions and polynomial regression in predicting FDI, emphasizing the superiority of GAM in capturing complex relationships and improving predictive accuracy. Conclusion: A nonlinear relationship is observed between FDI along with the covariates considered in this study. The authors believed that this study's findings would assist in taking efficient initiatives for FDI management and proactive economic indicator optimization to empower Bangladesh's economic resilience and foster sustainable growth. The analysis revealed that FDI and its related risk factors follow a nonlinear pattern. The study recommends using the GAM regression as a reliable method for predicting FDI in Bangladesh. The authors suggest that the findings can guide policymakers in developing strategies to increase FDI inflows, stimulate economic growth, and ensure sustainable economic development in Bangladesh.
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Chae H, Ahn MS, Noh D, Nam H, Hong D. BALLU2: A Safe and Affordable Buoyancy Assisted Biped. Front Robot AI 2021; 8:730323. [PMID: 34957224 PMCID: PMC8692890 DOI: 10.3389/frobt.2021.730323] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2021] [Accepted: 08/24/2021] [Indexed: 12/03/2022] Open
Abstract
This work presents the first full disclosure of BALLU, Buoyancy Assisted Lightweight Legged Unit, and describes the advantages and challenges of its concept, the hardware design of a new implementation (BALLU2), a motion analysis, and a data-driven walking controller. BALLU is a robot that never falls down due to the buoyancy provided by a set of helium balloons attached to the lightweight body, which solves many issues that hinder current robots from operating close to humans. The advantages gained also lead to the platform’s distinct difficulties caused by severe nonlinearities and external forces such as buoyancy and drag. The paper describes the nonconventional characteristics of BALLU as a legged robot and then gives an analysis of its unique behavior. Based on the analysis, a data-driven approach is proposed to achieve non-teleoperated walking: a statistical process using Spearman Correlation Coefficient is proposed to form low-dimensional state vectors from the simulation data, and an artificial neural network-based controller is trained on the same data. The controller is tested both on simulation and on real-world hardware. Its performance is assessed by observing the robot’s limit cycles and trajectories in the Cartesian coordinate. The controller generates periodic walking sequences in simulation as well as on the real-world robot even without additional transfer learning. It is also shown that the controller can deal with unseen conditions during the training phase. The resulting behavior not only shows the robustness of the controller but also implies that the proposed statistical process effectively extracts a state vector that is low-dimensional yet contains the essential information of the high-dimensional dynamics of BALLU’s walking.
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Buniya MK, Barbosa AR, Sattar S. Assessment of a 12-story Reinforced Concrete Special Moment Frame Building Using Performance-Based Seismic Engineering Standards and Guidelines: ASCE 41, TBI, and LATBSDC. ACI SYMPOSIUM PUBLICATIONS 2020; 339:10.14359/51724700. [PMID: 39440027 PMCID: PMC11494663 DOI: 10.14359/51724700] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/25/2024]
Abstract
A 160-foot (≈ 49 m) tall 12-story reinforced concrete special moment frame building is designed following ASCE 7-16 and ACI 318-14, and assessed using three Performance-Based Seismic Engineering (PBSE) standards and guidelines including ASCE/SEI 41, the Tall Buildings Initiative (TBI) guidelines for performance-based design of tall buildings, and the Los Angeles Tall Buildings Structural Design Council (LATBSDC) procedures. The assessments are performed at the combination of two performance and hazard levels including Collapse Prevention (CP) at the risk-targeted maximum considered earthquake (MCER) hazard level and Immediate Occupancy (IO) at a frequent ground motion level with 50 percent probability of exceedance in 30 years, i.e. serviceability performance level. Based on the recommendations of each of the three PBSE documents, nonlinear finite element models are implemented in OpenSees. Through nonlinear time-history response analyses, the finite element models are subjected to eleven ground motions that are selected following the ground motion selection recommendations in ASCE 7-16. Assessment results indicate that for the serviceability performance level, the code-compliant building meets the design requirements of the three PBSE documents for the interstory drift ratio and inelastic deformation of the structural components. At the MCER hazard level, although the building essentially satisfies the design requirements for the peak interstory drift ratios and inelastic deformation, the mean of the residual interstory drift ratios as well as the envelope of the residual drift ratios do not meet the limits of the TBI and LATBSDC guidelines. The results indicate that the newly designed building meets the ASCE 41 acceptance criteria but does not meet the design requirements set in TBI and LATBSDC guidelines.
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