Bioaccumulation and trophic magnification of short- and medium-chain chlorinated paraffins in food webs from Lake Ontario and Lake Michigan

Chlorinated paraffins (CPs) are complex mixtures of chlorinated alkanes used in a myriad of industrial applications as flame retardant plasticizers and additives. In this study, the distribution and bioaccumulation/biomagnification of short-chain CPs (C10-C13, SCCPs) and medium-chain CPs (C14-C17, MCCPs) were investigated in samples collected between 1999 and 2004 from Lake Ontario and northern Lake Michigan. Total (sigma) SCCPs and sigmaMCCPs concentrations in water from Lake Ontario were 1190 pg/L and 0.9 pg/L (data from 2004 only), respectively. CPs were also detected in invertebrates and fish from both lakes. SCCP predominated in organisms from Lake Michigan with the highest mean concentrations found in lake trout [Salvelinus namaycush, 123 +/- 35 ng/g wet weight (ww)]. In Lake Ontario, MCCPs predominated in most species with the highest levels detected in slimy sculpin (Cottus cognatus, 108 ng/g ww) and rainbow smelt (Osmerus mordax, 109 ng/g ww). Bioaccumulation and biomagnification of CPs was evaluated on an isomer basis (i.e., C10H17Cl5, C10H16Cl6, etc). Log bioaccumulation factors for lake trout (lipid based) ranged from 4.1 to 7.0 for SCCPs and 6.3 to 6.8 for MCCPs. SCCPs and MCCPs were found to biomagnify between prey and predators from both lakes with highest values observed for Diporeia-sculpin (Lake Ontario, C15Cl9 = 43; Lake Michigan, C10Cl5 = 26). Trophic magnification factors for the invertebrates-forage fish-lake trout food webs ranged from 0.41 to 2.4 for SCCPs and from 0.06 to 0.36 for MCCPs. Given the prominence of CPs, particularly in lake waters and in lower food web organisms, further investigation is needed to evaluate the magnitude of their distribution and accumulation/magnification in the Great Lakes environment.

Bioaccumulation and trophic transfer of short chain chlorinated paraffins in a marine food web from Liaodong Bay, North China

Short chain chlorinated paraffins (SCCPs) are under the evaluation for inclusion into the Stockholm Convention on persistent organic pollutants. However, information on their bioconcentration and biomagnification in marine ecosystems is unavailable, limiting the evaluation of their ecological risks. In this study, seawater, sediment, zooplankton, invertebrates, and fishes collected from Liaodong Bay, Bohai Sea, North China were analyzed to investigate the residual level, congener group profile, bioaccumulation, and trophic transfer of SCCPs in a marine food web. The total concentrations of SCCPs ranged from 4.1 to 13.1 ng L(-1) in seawater, 65 to 541 ng g(-1) (dw) in sediment, and 86 to 4400 ng g(-1) (ww) in organisms. Correspondence analysis indicated the relative enrichment of C10Cl5 and C11Cl5 formula groups in most aquatic organisms. Both the logarithm bioaccumulation factors (log BAFs: 4.1-6.7) and biota-sediment accumulation factors (BSAFs: 0.1-7.3) of individual congeners implied the bioaccumulation of SCCPs. The trophic magnification factor (TMF) of ∑SCCPs was determined to be 2.38 in the zooplankton-shrimp-fish food web, indicating biomagnification potential of SCCPs in the marine ecosystem. The TMF values of individual congener groups significantly correlated with their log KOW values.

Anti-human Olig2 antibody as a useful immunohistochemical marker of normal oligodendrocytes and gliomas

Olig2 is a recently identified transcription factor involved in the phenotype definition of cells in the oligodendroglial lineage. The expression of Olig2 transcript has been demonstrated in human oligodendroglial tumors, although the protein expression has not been studied extensively. We developed a polyclonal antibody to human Olig2 and analyzed it immunohistochemically. The antibody depicted a single distinct band of predicted molecular weight by Western blotting, and did not cross-react with human Olig1. In normal human brain tissue, the nuclei of oligodendrocytes of interfascicular, perivascular, and perineuronal disposition were clearly labeled by the antibody. Similarly, the nuclei of oligodendroglial tumors were labeled. There was no apparent correlation between the staining intensity and histological grade. Astrocytic components within the tumors were generally less or not stained. Astrocytic tumors were also positive with the Olig2 antiserum to a lesser extent, and the difference between oligodendroglial and astrocytic tumors was demonstrated by a statistical analysis. Olig2 and glial fibrillary acidic protein were expressed in a mutually exclusive manner, and Olig2 expression was cell-cycle related. Neither central neurocytoma nor schwannoma cases were stained. Our antibody was demonstrated to be useful in recognizing normal oligodendrocytes on paraffin sections, and applicable in diagnosis of some brain tumors.

Prediction of lymph node involvement in breast cancer by detection of altered glycosylation in the primary tumour

Axillary lymph node metastases at the time of diagnosis of breast cancer is the most accurate predictor of long-term prognosis. However, in patients treated by conservative surgery lymph node status often remains unknown. We have investigated the relation between changes in glycosylation of primary breast cancer cells, as judged by lectin binding, and the presence of axillary lymph node metastases. In a 24-year retrospective study, paraffin-embedded sections of 373 primary breast cancers were stained for the binding of Helix pomatia lectin (HPA). There was a strong association between HPA binding and presence of lymph node metastases, but no association with tumour size, histological grade, S-phase fraction, or patient age at diagnosis. This relation was confirmed by multiple regression analysis (in both survival and relapse free survival models) in which the prognostic significance of HPA binding was lost once nodal status had been introduced into the models. Life tables calculated for lymph-node positive versus lymph-node negative and HPA staining versus non-staining patients were almost identical over 15 years of follow-up. We propose that HPA recognises a glycoprotein that is associated with metastasis (to axillary lymph nodes and elsewhere) and poor prognosis in breast cancer. HPA binding to paraffin sections of primary tumour could aid difficult treatment decisions by providing an additional assessment of staging and likely long-term patient prognosis.

Numerical taxonomy of Nocardia

One hundred and seventeen features each for 157 strains belonging to the species Nocardia asteroides, N. brasiliensis, N. caviae, N. madurae, N. pelletieri, and N. dassonvillei and Streptomyces somaliensis were studied. The data were subjected to computer analysis, which included calculating S-value matrix, link sort and clustering, feature frequency sort, and median organism calculation. Of the 157 strains studied, 96 strains formed seven distinct groups, whereas the other strains remained unclustered or presented irregular groupings. The seven groups represented N. asteroides (four groups), N. caviae, N. brasiliensis, and N. madurae. Group II of N. asteroides corresponds to N. farcinica group of Tsukamura. The results are discussed and compared with those of other workers.

The role of frozen section in surgical staging of low risk endometrial cancer

BACKGROUND

The role of frozen section (FS) in intraoperative decision making for surgical staging of endometrial cancer is controversial. Objective of this study is to assess the agreement rate between the FS and paraffin section (PS); and the potential impact of the role of FS in the intra-operative decision making for the complete surgical staging in low risk endometrial cancer.

METHODS

This is a retrospective analysis of patients diagnosed with intra-operative FS stage I, grade I or II endometrial cancer from 1995-2004. FS results were compared with final pathology results with regard to tumor grade, depth of myometrial invasion, cervical involvement, lymphovascular invasion, and lymph node involvement. Agreement statistic with kappa was calculated using SPSS statistical software. Categorical variables were tested using chi-square test with p value of ≤0.05 being statistically significant.

RESULTS

Of the 457 patients with endometrial cancer, 146 were evaluated by intra-operative FS and met inclusion criteria. FS results were in disagreement with permanent section in 35% for the grade (kappa 0.58, p = 0.003), 28% for depth of myometrial invasion (kappa 0.61, p<0.0001), 13% for cervical involvement (kappa 0.78, p = 0.002), and 32% for lymphovascular invasion (kappa 0.6, p = 0.01). Permanent pathology upstaged 31.9% & 23.2% of FS stage IA, & IB specimen respectively. Lymph node dissection was done in 56.8%. Lymph node metastasis was identified in 8.4%. Use of intraoperative FS would have resulted in suboptimal surgical treatment in 13% stage IA and 6.6% of stage IB patients respectively by foregoing lymphadenectomy.

CONCLUSION

A significant number of patients with low risk endometrial cancer by FS were upstaged and upgraded on final pathology. Before placing absolute reliance on intraoperative FS to undertake complete surgical staging, the inherent limitation of the same in predicting final stage and grade highlighted by our data need to be carefully considered.

Paraffin oxidation in Pseudomonas aeruginosa. I. Induction of paraffin oxidation

The induction of paraffin oxidation in intact cells of Pseudomonas aeruginosa was investigated. Oxidation of (14)C-heptane by cell-free extracts of adapted cells showed that the activity of whole cells is a reliable reflection of the synthesis of the first enzyme in the degradation of n-alkanes. Induction was significantly affected by glucose and could be completely repressed by malate. The amino acids l-proline, l-alanine, l-arginine, and l-tyrosine exhibited a rather low repressor action. Malonate, a nonrepressive carbon source, allowed gratuitous enzyme synthesis. A number of compounds which did not sustain growth were found to be suitable substitutes for paraffins as an inducer. Among these were cyclopropane and diethoxymethane. The induction studied under conditions of gratuity with the latter compound as an inducer showed immediate linear kinetics only at saturating inducer concentrations. With n-hexane as the inducer, a lag time was always observed, even when high concentrations were used.

Human papillomavirus 16 E5 oncogene contributes to two stages of skin carcinogenesis

High-risk human papillomaviruses (HPVs), which cause the vast majority of cervical cancer, other anogenital cancers, and a subset of head and neck squamous cell carcinomas, encode three oncogenes: E5, E6, and E7. To determine the oncogenic properties of HPV16 E5 in vivo, we previously generated K14E5 transgenic mice, in which expression of E5 was directed to the basal compartment of stratified squamous epithelia. In these mice, E5 induced epidermal hyperplasia and spontaneous skin tumors. In the current study, we determined how E5 contributes to tumor formation in the skin using a multistage model for skin carcinogenesis that specifies the role of genes in three stages: initiation, promotion, and malignant progression. Both initiation and promotion are required steps for papilloma formation. K14E5 mice treated with the initiating agent 7,12-dimethylbenz(a)anthracene (DMBA) developed more papillomas than like-treated nontransgenic mice, whereas neither K14E5 nor nontransgenic mice treated with the promoting agent 12-O-tetradecanoylphorbol-13-acetate (TPA) developed papillomas. K14E5 mice treated with both DMBA and TPA to induce large numbers of papillomas had a higher incidence and earlier onset of carcinoma progression compared with like-treated nontransgenic mice. Thus, HPV16 E5 contributes to two stages of skin carcinogenesis: promotion and progression. The progressive neoplastic disease in K14E5 mice differed from that in nontransgenic mice in that benign tumors converted from exophytic to endophytic papillomas before progressing to carcinomas. Initial genetic and immunohistopathologic analyses did not determine the underlying basis for this distinct morphology, which correlates with a highly penetrant neoplastic phenotype.

Congener-specific distribution and bioaccumulation of short-chain chlorinated paraffins in sediments and bivalves of the Bohai Sea, China

Short-chain chlorinated paraffins (SCCPs) are a new type of persistent organic pollutants that are of great environmental concern because of their wide distribution. In this study, surface sediments and bivalve samples were collected from the coastal area of the Bohai Sea in China. Total SCCP (ΣSCCP) concentrations in surface sediments and bivalves ranged from 97.4 ng g(-1) dry weight (dw) to 1756.7 ng g(-1) dw and 476.4-3269.5 ng g(-1) dw, respectively. C10-CPs and C11-CPs were the predominant homologue groups in all sediments and bivalves. Specific congener composition analysis and correspondence analysis indicated that the local SCCP source mainly came from CP-42 and CP-52 products, and riverine input had an important function. The biota-sediment accumulation factors of ΣSCCPs for bivalves ranged from 1.08 to 1.61, and a significant correlation indicated that the SCCP congener with higher chlorination degree was more likely to be accumulated in bivalves.

Short-chain chlorinated paraffins in marine organisms from the Pearl River Estuary in South China: Residue levels and interspecies differences

There is limited information available on the bioaccumulation of short-chain chlorinated paraffins (SCCPs), a complicated group of persistent organic pollutants (POPs) candidates listed in the Stockholm Convention, in estuarine ecosystem. This study analyzed SCCPs in marine organisms (five fish and six invertebrates) from the Pearl River Estuary in South China. The concentrations of total SCCPs ranged from 210 to 21,000 ng · g(-1) lipid weight, with relatively higher levels in benthic invertebrates (shrimp, crabs and bivalves) than in non-benthic species (pelagic and mesopelagic fish and squid). SCCPs were biomagnified from prey fish (tapertail anchovy, Coilia mystus) to predator fish (Bombay duck, Harpadon nehereus), and the biomagnification factors (BMFs) of SCCP congeners ranged from 1.1 (C10H16Cl6) to 3.4 (C13H18Cl10). Species-specific homologue group patterns were also observed, with significantly lower proportions of C10 congeners in the shrimp, bivalves and Bombay duck than in the other species.

Utilization of n-alkanes by a newly isolated strain of Acinetobacter venetianus: the role of two AlkB-type alkane hydroxylases

A bacterial strain capable of utilizing n-alkanes with chain lengths ranging from decane (C10H22) to tetracontane (C40H82) as a sole carbon source was isolated using a system for screening microorganisms able to grow on paraffin (mixed long-chain n-alkanes). The isolate, identified according to its 16S rRNA sequence as Acinetobacter venetianus, was designated A. venetianus 6A2. Two DNA fragments encoding parts of AlkB-type alkane hydroxylase homologues, designated alkMa and alkMb, were polymerase chain reaction-amplified from the genome of A. venetianus 6A2. To study the roles of these two alkM paralogues in n-alkane utilization in A. venetianus 6A2, we constructed alkMa, alkMb, and alkMa/alkMb disruption mutants. Studies on the growth patterns of the disruption mutants using n-alkanes with different chain lengths as sole carbon source demonstrated central roles for the alkMa and alkMb genes in utilization of C10 to C18 n-alkanes. Comparative analysis of these patterns also suggested different substrate preferences for AlkMa and AlkMb in n-alkane utilization. Because both single and double mutants were able to grow on n-alkanes with chain lengths of C20 and longer, we concluded that yet another enzyme(s) for the utilization of these n-alkanes must exist in A. venetianus 6A2.

Short-chain chlorinated paraffins in terrestrial bird species inhabiting an e-waste recycling site in South China

Short-chain chlorinated paraffins (SCCPs) are under review by the Stockholm Convention on Persistent Organic Pollutants. Currently, limited data are available about SCCPs in terrestrial organisms. In the present study, SCCP concentration in the muscles of seven terrestrial bird species (n = 38) inhabiting an e-waste recycling area in South China was determined. This concentration varied from 620 to 17,000 ng/g lipid. Resident birds accumulated significantly higher SCCP concentrations than migratory birds (p < 0.01). Trophic magnification was observed for migratory bird species but not for resident, which was attributed to high heterogeneity of SCCP in e-waste area. Two different homologue group patterns were observed in avian samples. The first pattern was found in five bird species dominated by C10 and C11 congeners, while the second was found in the remains, which show rather equal abundance of homologue groups. This may be caused by two sources of SCCPs (local and e-waste) in the study area.

Bioaccumulation of organic pollutants in Indo-Pacific humpback dolphin: A review on current knowledge and future prospects

Indo-Pacific humpback dolphin (Sousa chinensis) are chronically exposed to organic pollutants since they inhabit shallow coastal waters that are often impacted by anthropogenic activities. The aim of this review was to evaluate existing knowledge on the occurrence of organic pollutants in Indo-Pacific humpback dolphins, identify knowledge gaps, and offer recommendations for future research directions. We discussed the trends in the bioaccumulation of organic pollutants in Indo-Pacific humpback dolphins focusing on sources, physicochemical properties, and usage patterns. Furthermore, we examined factors that influence bioaccumulation such as gender, age, dietary intake and tissue-specific distribution. Studies on bioaccumulation in Indo-Pacific humpback dolphin remain scarce, despite high concentrations above 13,000 ng/g lw we previously detected for PFOS, ∑PBDE and chlorinated paraffins. The maximum concentration of organochlorines detected was 157,000 ng/g wt. Furthermore, variations in bioaccumulation were shown to be caused by factors such as usage patterns and physicochemical properties of the pollutant. However, restrictions in sampling inhibit investigations on exposure pathway and toxicity of organic pollutants in Indo-Pacific humpback dolphin. We proposed the use of biopsy sampling, predictive bioaccumulation and toxicity modeling, and monitoring other emerging contaminants such as microplastics and pharmaceuticals for future health risk assessment on this critically endangered marine mammal species.

Bioaccumulation and biomagnification of short-chain chlorinated paraffins in marine organisms from the Pearl River Estuary, South China

Short-chain chlorinated paraffins (SCCPs) are a series of new persistent organic pollutants, posing a risk of significant adverse effects to biota. Increasing attention has been paid to SCCP pollution in China as large amounts of chlorinated paraffin (CP) products containing SCCPs have been produced and used there. However, knowledge of the bioaccumulation of SCCPs in marine organisms from the Pearl River Estuary (PRE), Southern China, is still scarce. In this study, SCCP concentrations were measured in seawater, sediments, and marine organisms from the PRE. SCCP concentrations ranged from 180 to 460 ng/L in seawater, from 180 to 620 ng/g dry weight (dw) in sediments, and from 870 to 36,000 ng/g lipid weight (lw) in marine biota samples. C_10-11 SCCPs were the predominant homologues in all the samples, with an average abundance of 68% in seawater, 57% in sediments, and 56-77% in marine organisms. However, chlorine patterns of SCCPs in seawater, sediments, and marine organisms were different. Cl_8-10 SCCPs dominated in sediments, whereas Cl_5-7 SCCPs were the predominant SCCP homologues in water and most organism species. The logarithm bioaccumulation factors (BAFs) of SCCPs ranged from 1.6 to 3.0, and increased significantly with the increase of K_ow values for most marine biota species, indicating that K_ow was the major factor controlling the bioaccumulation of SCCPs and that SCCPs with higher lipophilicity were more prone to being bioaccumulated from water. Opposite to that observed for log BAFs, biota-sediment accumulation factors of specific SCCPs (range: 0.01-30) decreased significantly with the increase of K_ow values. The biomagnification factor of total SCCPs for oyster-mangrove crab was 2.40, implying the potential biomagnification of SCCPs for benthos in the PRE.

Short- and Medium-Chain Chlorinated Paraffins in Foods from the Sixth Chinese Total Diet Study: Occurrences and Estimates of Dietary Intakes in South China

Food consumption has been identified as a major pathway for human exposure to short-chain chlorinated paraffins (SCCPs) and medium-chain chlorinated paraffins (MCCPs), but evaluations of SCCP and MCCP intake from major dietary sources are limited. We used the sixth Chinese Total Diet Study to perform a comprehensive investigation of SCCPs and MCCPs in cereals, vegetables, potatoes, legumes, eggs, milk, meats, and aquatic foods from nine southern provinces. The geographical distribution of CP concentrations showed higher levels in Jiangsu, Hubei, and Zhejiang provinces. The CP concentrations in most animal-origin foods were higher than those in foods of plant origin. The total estimated daily intakes (EDIs) of SCCPs and MCCPs, with average values of 7.0 × 10² and 4.7 × 10² ng kg^-1 day^-1, respectively, were mostly contributed by cereals, vegetables, and meats. Risk assessment indicated the EDIs of CPs posed no significant risk to residents in South China.

Isolation and characterization of biosurfactant producing and oil degrading Bacillus subtilis MG495086 from formation water of Assam oil reservoir and its suitability for enhanced oil recovery

The strains isolated from the formation water were characterized and screened considering their crude oil degradation capability and biosurfactant production ability. The growth kinetics study of isolated Bacillus subtilis MG495086 was carried out by varying growth parameters i.e. carbon source, temperature, pH and salinity. The biosurfactant production was optimized adopting RSM-CCD considering carbon source (1-5%), pH (3-11) and temperature (25-65 °C) as matrix parameters. The optimum biosurfactant production (6.3 ± 0.1 g/L) and the minimum surface tension 29.85 mN/m were obtained after 96 h of incubation under optimal conditions i.e. 3.8% (v/v) of light-paraffin oil as sole carbon source at 62.4 °C and pH 7.7 with the maximum oil degradation capability of 91.3 ± 5%. Critical micelle concentration value of crude biosurfactant was found to be 40 mg/L with high emulsification activity of 72.45 ± 0.85%. The produced biosurfactant was identified as lipopeptide (Surfactin) and characterized using various analytical techniques to establish its suitability for microbial enhanced oil recovery.

Isolation and characterization of a potential paraffin-wax degrading thermophilic bacterial strain Geobacillus kaustophilus TERI NSM for application in oil wells with paraffin deposition problems

Paraffin deposition problems, that have plagued the oil industry, are currently remediated by mechanical and chemical means. However, since these methods are problematic, a microbiological approach has been considered. The bacteria, required for the mitigation of paraffin deposition problems, should be able to survive the high temperatures of oil wells and degrade the paraffins under low oxygen and nutrient conditions while sparing the low carbon chain paraffins. In this study, a thermophilic paraffinic wax degrading bacterial strain was isolated from a soil sample contaminated with paraffinic crude oil. The selected strain, Geobacillus TERI NSM, could degrade 600mg of paraffinic wax as the sole carbon source in 1000ml minimal salts medium in 7d at 55 degrees C. This strain was identified as Geobacillus kaustophilus by fatty acid methyl esters analysis and 16S rRNA full gene sequencing. G. kaustophilus TERI NSM showed 97% degradation of eicosane, 85% degradation of pentacosane and 77% degradation of triacontane in 10d when used as the carbon source. The strain TERI NSM could also degrade the paraffins of crude oil collected from oil wells that had a history of paraffin deposition problems.

Evaluating age and temporal trends of chlorinated paraffins in pooled serum collected from males in Australia between 2004 and 2015

Chlorinated paraffins (CPs) are high production volume chemicals of which some show resistance to environmental degradation, long-rang transport, bioaccumulation and toxicity potential. Information regarding their presence in humans is limited, including their human bioaccumulation potential. The present study aimed to evaluate CP levels in human serum from Australia in order to better understand their exposure and current pollution status as well as trends associated with age and time between 2004 and 2015. For this, we selected a male sub-group of the Australian population under 60 years old (n = 16 pools, total 1600 serum samples). While long-chain CP (C_18-20) and most short-chain CP (C_10-13, SCCPs) levels were below method detection limits (MDL), medium-chain CPs (C_14-17, MCCPs) were found in most serum samples (detection frequency 94%) as well as CPs with a carbon chain length of nine (detection frequency 76%). The levels of ΣSCCPs and ΣMCCPs ranged from <MDL-140 and <MDL-520 ng/g lipid weight (lw), respectively, with a median value of 97 ng/g lw for SCCPs and 190 ng/g lw for MCCPs. Analysis by age stratification did not identify any trends but an increase of a factor of 2 in MCCPs levels was observed over time (p < 0.05). Plotting the MCCP/SCCP ratio of all available data in humans over time showed also an increasing trend, including for China. The reported levels are relatively low considering the levels reported in environmental media from Australia such which raises the question to what extent CPs accumulate in humans. Future studies on this aspect are required.