Automatic disease stage classification of glioblastoma multiforme histopathological images using deep convolutional neural network

In the field of computational histopathology, computer-assisted diagnosis systems are important in obtaining patient-specific diagnosis for various diseases and help precision medicine. Therefore, many studies on automatic analysis methods for digital pathology images have been reported. In this work, we discuss an automatic feature extraction and disease stage classification method for glioblastoma multiforme (GBM) histopathological images. In this paper, we use deep convolutional neural networks (Deep CNNs) to acquire feature descriptors and a classification scheme simultaneously. Further, comparisons with other popular CNNs objectively as well as quantitatively in this challenging classification problem is undertaken. The experiments using Glioma images from The Cancer Genome Atlas shows that we obtain 96.5 % average classification accuracy for our network and for higher cross validation folds other networks perform similarly with a higher accuracy of 98.0 % . Deep CNNs could extract significant features from the GBM histopathology images with high accuracy. Overall, the disease stage classification of GBM from histopathological images with deep CNNs is very promising and with the availability of large scale histopathological image data the deep CNNs are well suited in tackling this challenging problem.

COMPUTATIONAL 2D and 3D MEDICAL IMAGE DATA COMPRESSION MODELS

In this world of big data, the development and exploitation of medical technology is vastly increasing and especially in big biomedical imaging modalities available across medicine. At the same instant, acquisition, processing, storing and transmission of such huge medical data requires efficient and robust data compression models. Over the last two decades, numerous compression mechanisms, techniques and algorithms were proposed by many researchers. This work provides a detailed status of these existing computational compression methods for medical imaging data. Appropriate classification, performance metrics, practical issues and challenges in enhancing the two dimensional (2D) and three dimensional (3D) medical image compression arena are reviewed in detail.

On a hybrid lossless compression technique for three-dimensional medical images

In the last two decades, incredible progress in various medical imaging modalities and sensing techniques have been made, leading to the proliferation of three-dimensional (3D) imagery. Byproduct of such great progress is the production of huge volume of medical images and this big data place a burden on automatic image processing methods for diagnostic assistance processes. Moreover, large amount of medical imaging data needs to be transmitted with no loss of information for the purpose of telemedicine, remote diagnosis etc. In this work, we consider a hybrid lossless compression technique with object-based features for three-dimensional (3D) medical images. Our approach utilizes two phases as follows: first we determine the volume of interest (VOI) for a given 3D medical imagery using selective bounding volume (SBV) method, and second the obtained VOI is encoded using a hybrid lossless algorithm using Lembel-Ziv-Welch Coding (LZW) followed by arithmetic coding (L to A). Experimental results show that our proposed 3D medical image compression method is comparable with other existing standard lossless encoding methods such as Huffman Coding, Run Length Coding, LZW, and Arithmetic Coding and obtains superior results overall.