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26
Song H, Smolen P, Av-Ron E, Baxter DA, Byrne JH. Dynamics of a minimal model of interlocked positive and negative feedback loops of transcriptional regulation by cAMP-response element binding proteins. Biophys J 2007;92:3407-24. [PMID: 17277187 PMCID: PMC1853161 DOI: 10.1529/biophysj.106.096891] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2006] [Accepted: 01/11/2007] [Indexed: 02/06/2023]  Open
27
Baxter DA, Byrne JH. Feeding behavior of Aplysia: a model system for comparing cellular mechanisms of classical and operant conditioning. Learn Mem 2007;13:669-80. [PMID: 17142299 DOI: 10.1101/lm.339206] [Citation(s) in RCA: 77] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
28
Baxter DA, Byrne JH. Simulator for neural networks and action potentials. Methods Mol Biol 2007;401:127-154. [PMID: 18368364 DOI: 10.1007/978-1-59745-520-6_8] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
29
Av-Ron E, Byrne JH, Baxter DA. Teaching basic principles of neuroscience with computer simulations. JOURNAL OF UNDERGRADUATE NEUROSCIENCE EDUCATION : JUNE : A PUBLICATION OF FUN, FACULTY FOR UNDERGRADUATE NEUROSCIENCE 2006;4:A40-A52. [PMID: 23493644 PMCID: PMC3592631] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Figures] [Subscribe] [Scholar Register] [Received: 02/15/2006] [Revised: 03/31/2006] [Accepted: 05/06/2006] [Indexed: 06/01/2023]
30
Cai Y, Flynn M, Baxter DA, Crow T. Role of A-type K+ channels in spike broadening observed in soma and axon of Hermissenda type-B photoreceptors: a simulation study. J Comput Neurosci 2006;21:89-99. [PMID: 16732492 DOI: 10.1007/s10827-006-7426-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2005] [Revised: 01/21/2006] [Accepted: 01/24/2006] [Indexed: 10/24/2022]
31
Song H, Smolen P, Av-Ron E, Baxter DA, Byrne JH. Bifurcation and singularity analysis of a molecular network for the induction of long-term memory. Biophys J 2006;90:2309-25. [PMID: 16428285 PMCID: PMC1403175 DOI: 10.1529/biophysj.105.074500] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
32
Smolen P, Baxter DA, Byrne JH. A model of the roles of essential kinases in the induction and expression of late long-term potentiation. Biophys J 2006;90:2760-75. [PMID: 16415049 PMCID: PMC1414565 DOI: 10.1529/biophysj.105.072470] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]  Open
33
Lorenzetti FD, Mozzachiodi R, Baxter DA, Byrne JH. Classical and operant conditioning differentially modify the intrinsic properties of an identified neuron. Nat Neurosci 2005;9:17-9. [PMID: 16311590 DOI: 10.1038/nn1593] [Citation(s) in RCA: 68] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2005] [Accepted: 10/11/2005] [Indexed: 11/08/2022]
34
Reyes FD, Mozzachiodi R, Baxter DA, Byrne JH. Reinforcement in an in vitro analog of appetitive classical conditioning of feeding behavior in Aplysia: blockade by a dopamine antagonist. Learn Mem 2005;12:216-20. [PMID: 15930499 DOI: 10.1101/lm.92905] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
35
Hayes RD, Byrne JH, Cox SJ, Baxter DA. Estimation of single-neuron model parameters from spike train data. Neurocomputing 2005. [DOI: 10.1016/j.neucom.2004.10.039] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
36
Pettigrew DB, Smolen P, Baxter DA, Byrne JH. Dynamic properties of regulatory motifs associated with induction of three temporal domains of memory in aplysia. J Comput Neurosci 2005;18:163-81. [PMID: 15714268 DOI: 10.1007/s10827-005-6557-0] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
37
Xiao J, Cai Y, Yen J, Steffen M, Baxter DA, Feigenspan A, Marshak D. Voltage-clamp analysis and computational model of dopaminergic neurons from mouse retina. Vis Neurosci 2005;21:835-49. [PMID: 15733339 DOI: 10.1017/s0952523804216042] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2004] [Indexed: 11/05/2022]
38
Cataldo E, Brunelli M, Byrne JH, Av-Ron E, Cai Y, Baxter DA. Computational Model of Touch Sensory Cells (T Cells) of the Leech: Role of the Afterhyperpolarization (AHP) in Activity-Dependent Conduction Failure. J Comput Neurosci 2005;18:5-24. [PMID: 15789166 DOI: 10.1007/s10827-005-5477-3] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2004] [Revised: 05/09/2004] [Accepted: 07/26/2004] [Indexed: 10/25/2022]
39
Smolen P, Hardin PE, Lo BS, Baxter DA, Byrne JH. Simulation of Drosophila circadian oscillations, mutations, and light responses by a model with VRI, PDP-1, and CLK. Biophys J 2004;86:2786-802. [PMID: 15111397 PMCID: PMC1304149 DOI: 10.1016/s0006-3495(04)74332-5] [Citation(s) in RCA: 55] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
40
Wüstenberg DG, Boytcheva M, Grünewald B, Byrne JH, Menzel R, Baxter DA. Current- and Voltage-Clamp Recordings and Computer Simulations of Kenyon Cells in the Honeybee. J Neurophysiol 2004;92:2589-603. [PMID: 15190098 DOI: 10.1152/jn.01259.2003] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]  Open
41
Brembs B, Baxter DA, Byrne JH. Extending in vitro conditioning in Aplysia to analyze operant and classical processes in the same preparation. Learn Mem 2004;11:412-20. [PMID: 15254218 PMCID: PMC498323 DOI: 10.1101/lm.74404] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
42
Steffen MA, Seay CA, Amini B, Cai Y, Feigenspan A, Baxter DA, Marshak DW. Spontaneous activity of dopaminergic retinal neurons. Biophys J 2004;85:2158-69. [PMID: 14507682 PMCID: PMC1303443 DOI: 10.1016/s0006-3495(03)74642-6] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]  Open
43
Luo C, Clark JW, Canavier CC, Baxter DA, Byrne JH. Multimodal behavior in a four neuron ring circuit: mode switching. IEEE Trans Biomed Eng 2004;51:205-18. [PMID: 14765693 DOI: 10.1109/tbme.2003.820380] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
44
Mozzachiodi R, Lechner HA, Baxter DA, Byrne JH. In vitro analog of classical conditioning of feeding behavior in aplysia. Learn Mem 2004;10:478-94. [PMID: 14657259 PMCID: PMC305463 DOI: 10.1101/lm.65303] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
45
Yu X, Byrne JH, Baxter DA. Modeling interactions between electrical activity and second-messenger cascades in Aplysia neuron R15. J Neurophysiol 2003;91:2297-311. [PMID: 14702331 DOI: 10.1152/jn.00787.2003] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]  Open
46
Antzoulatos EG, Cleary LJ, Eskin A, Baxter DA, Byrne JH. Desensitization of postsynaptic glutamate receptors contributes to high-frequency homosynaptic depression of aplysia sensorimotor connections. Learn Mem 2003;10:309-13. [PMID: 14557602 DOI: 10.1101/lm.61403] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
47
Smolen P, Baxter DA, Byrne JH. Reduced Models of the Circadian Oscillators in Neurospora crassa and Drosophila melanogaster Illustrate Mechanistic Similarities. OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY 2003;7:337-54. [PMID: 14683608 DOI: 10.1089/153623103322637661] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
48
Phares GA, Antzoulatos EG, Baxter DA, Byrne JH. Burst-induced synaptic depression and its modulation contribute to information transfer at Aplysia sensorimotor synapses: empirical and computational analyses. J Neurosci 2003;23:8392-401. [PMID: 12968001 PMCID: PMC6740707] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/04/2023]  Open
49
Flynn M, Cai Y, Baxter DA, Crow T. A computational study of the role of spike broadening in synaptic facilitation of Hermissenda. J Comput Neurosci 2003;15:29-41. [PMID: 12843693 DOI: 10.1023/a:1024418701765] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
50
Cai Y, Baxter DA, Crow T. Computational study of enhanced excitability in Hermissenda: membrane conductances modulated by 5-HT. J Comput Neurosci 2003;15:105-21. [PMID: 12843698 DOI: 10.1023/a:1024479020420] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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