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Bloch JI, Fisher DC, Gingerich PD, Gunnell GF, Simons EL, Uhen MD. Cladistic analysis and anthropoid origins. Science 1997; 278:2134-6. [PMID: 9432721 DOI: 10.1126/science.278.5346.2134] [Citation(s) in RCA: 49] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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Miller ER, Simons EL. Dentition of Proteopithecus sylviae, an archaic anthropoid from the Fayum, Egypt. Proc Natl Acad Sci U S A 1997; 94:13760-4. [PMID: 9391100 PMCID: PMC28380 DOI: 10.1073/pnas.94.25.13760] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
Abstract
Proteopithecus sylviae is an archaic anthropoid from the late Eocene quarry L-41, Fayum Province, Egypt. The dentition of Proteopithecus is very primitive and does not closely resemble that of other, better known, primates from the Fayum (e.g., parapithecids and propliopithecids). The dental morphology, much of which is described herein, shows a platyrrhine-like level of organization, suggesting that P. sylviae may occupy a position near the base of the modern anthropoid radiation.
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Matsunaga J, Simons EL, Simons RW. Escherichia coli RNase III (rnc) autoregulation occurs independently of rnc gene translation. Mol Microbiol 1997; 26:1125-35. [PMID: 9426147 DOI: 10.1046/j.1365-2958.1997.6652007.x] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Control of mRNA stability is an established means of regulating gene expression. However, the detailed mechanisms by which such control is achieved are only now emerging. In particular, there remains a question about the involvement of translation. Escherichia coli ribonuclease III (RNase III) negatively autoregulates expression of its own gene (rnc) approximately 10-fold, by cleaving the untranslated leader and initiating approximately 10-fold more rapid decay of the rnc mRNA, after which RNase III plays no further role. Here, we define the mechanism of this control further. Mutations that increase rnc gene translation abolish autoregulation by increasing the stability of the RNase III-cleaved transcript RNA approximately 10-fold, with no effect on the uncleaved species. Mutations that decrease translation destabilize the rnc mRNA in the presence or absence of RNase III. In so doing, they reveal a pathway of rnc transcript decay distinct from the RNase III-dependent pathway. Stability of a 'mini-rnc' transcript containing the rnc leader and only the first two codons of the rnc gene is unaffected by decreased translation, presumably because sequences required for this pathway were removed. Importantly, this mini-rnc transcript is regulated normally by RNase III. Moreover, rnc transcripts synthesized in vitro do not decay in cell-free extracts lacking ribosomes, unless they are first cleaved by RNase III. These two results show that RNase III cleavage can initiate rnc transcript decay independently of rnc gene translation, unambiguously establishing that control of mRNA decay need not involve changes in translation. How rnc gene translation is optimized for efficient autoregulation will also be discussed.
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Jungers WL, Godfrey LR, Simons EL, Chatrath PS. Phalangeal curvature and positional behavior in extinct sloth lemurs (Primates, Palaeopropithecidae). Proc Natl Acad Sci U S A 1997; 94:11998-2001. [PMID: 11038588 PMCID: PMC23681 DOI: 10.1073/pnas.94.22.11998] [Citation(s) in RCA: 76] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Recent paleontological discoveries in Madagascar document the existence of a diverse clade of palaeopropithecids or "sloth lemurs": Mesopropithecus (three species), Babakotia (one species), Palaeopropithecus (three species), and Archaeoindris (one species). This mini-radiation of now extinct ("subfossil") lemurs is most closely related to the living indrids (Indri, Propithecus, and Avahi). Whereas the extant indrids are known for their leaping acrobatics, the palaeopropithecids (except perhaps for the poorly known giant Archaeoindris) exhibit numerous skeletal design features for antipronograde or suspensory positional behaviors (e.g., high intermembral indices and mobile joints). Here we analyze the curvature of the proximal phalanges of the hands and feet. Computed as the included angle (theta), phalangeal curvature develops in response to mechanical use and is known to be correlated in primates with hand and foot function in different habitats; terrestrial species have straighter phalanges than their arboreal counterparts, and highly suspensory forms such as the orangutan possess the most curved phalanges. Sloth lemurs as a group are characterized by very curved proximal phalanges, exceeding those seen in spider monkeys and siamangs, and approaching that of orangutans. Indrids have curvatures roughly half that of sloth lemurs, and the more terrestrial, subfossil Archaeolemur possesses the least curved phalanges of all the indroids. Taken together with many other derived aspects of their postcranial anatomy, phalangeal curvature indicates that the sloth lemurs are one of the most suspensory clades of mammals ever to evolve.
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Simons EL, Miller ER. An upper dentition of Aframonius dieides (Primates) from the Fayum, Egyptian Eocene. Proc Natl Acad Sci U S A 1997; 94:7993-6. [PMID: 9223301 PMCID: PMC21543 DOI: 10.1073/pnas.94.15.7993] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023] Open
Abstract
The first known upper dentitions--an adult and subadult--of the cercamoniine adapiform Aframonius dieides are described. Comparisons show that A. dieides has an upper molar morphology resembling that of other cercamoniine adapids but the species lacks some of their typical specializations. The new dental material confirms that Aframonius stands closer to Mahgarita from west Texas and Cercamonius from Europe than it does to Schizarodon and Omanodon from Oman-all of which have been ranked as cercamoniines. Affinities of the latter two genera probably lie with the Anchomomys group. The presence of a cercamoniine adapid in the Eocene of Egypt supports the view that early African anthropoideans evolved not in isolation, but concomitantly with a contemporary Eocene prosimian radiation.
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Simons EL. Discovery of the smallest Fayum Egyptian primates (Anchomomyini, Adapidae). Proc Natl Acad Sci U S A 1997; 94:180-4. [PMID: 11038538 PMCID: PMC19275 DOI: 10.1073/pnas.94.1.180] [Citation(s) in RCA: 71] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Two new adapiform primate species from locality 41, Jebel Qatrani Formation, Egypt, are described. The first, here named Wadilemur elegans genus novum species novum (holotype Cairo Geological Museum 42211), consists of a right mandible with P3-M3. The second is assigned to Anchomomys milleri species novum, with a holotype Cairo Geological Museum 42842, that includes the right mandible with lower canine to M3. Both species are allied closely with genera that are known to be from Eocene deposits either in Europe, Tunisia, or the Sultanate of Oman (Arabia), thus enhancing earlier paleomagnetic evidence that locality 41 was deposited in Eocene times.
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Teaford MF, Maas MC, Simons EL. Dental microwear and microstructure in early oligocene primates from the Fayum, Egypt: implications for diet. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY 1996; 101:527-43. [PMID: 9016366 DOI: 10.1002/(sici)1096-8644(199612)101:4<527::aid-ajpa7>3.0.co;2-s] [Citation(s) in RCA: 48] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
Textbook descriptions usually portray the Fayum anthropoideans as frugivores, with Parapithecus grangeri including a folivorous component in its diet and Apidium a component of hard-object feeding. Recent work with modern mammals has shown that analyses of both dental microwear and dental microstructure may yield insights into diet and tooth use. The purpose of this study was to combine these two techniques to gain a better perspective on the paleobiology of the Fayum higher primates. Dental microwear analyses involved the use of high resolution epoxy casts of Aegyptopithecus, Parapithecus, and Apidium housed in the Duke University Primate Center. Scanning electron micrographs were taken at x500, and all microwear features in each micrograph were digitized. For microstructure analyses, molar teeth were sectioned in a variety of planes, lightly etched, and photographed in the SEM. Results of the dental microwear analyses indicate that the three Fayum anthropoideans all clustered with modern primate frugivores but that there were also significant differences between Aegyptopithecus and the other two Fayum genera. By contrast, dental microstructure analyses showed important differences between Apidium and the other two genera. The reason for these differences probably lies in a combination of body size and dietary differences, with Aegyptopithecus occasionally feeding on hard objects and Apidium maximizing wear resistance through a unique emphasis of radial (rather than decussating) enamel.
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Matsunaga J, Dyer M, Simons EL, Simons RW. Expression and regulation of the rnc and pdxJ operons of Escherichia coli. Mol Microbiol 1996; 22:977-89. [PMID: 8971718 DOI: 10.1046/j.1365-2958.1996.01529.x] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
Escherichia coli rnc-era-recO operon (rnc operon) expression is negatively autoregulated at the level of message stability by ribonuclease III (RNase III), which is encoded by the rnc gene. RNase III, a double-stranded RNA-specific endoribonuclease involved in rRNA and mRNA processing and degradation, cleaves a stemloop structure in the 5' untranslated leader, initiating rapid decay of the rnc operon mRNA. Here, we examine rnc operon expression and regulation in greater detail. Northern, primer extension, and lacZ fusion analyses show that a single promoter (rncP) specifies two principal mRNAs: the 1.9 kb rnc-era transcript and the less-abundant 3.7 kb RNA encoding rnc-era-recO and the downstream pdxJ and acpS genes. A 1.3 kb pdxJ-acpS RNA is transcribed from a promoter (pdxP) located within recO. About 70% of pdxJ transcription depends on transcription from rncP. Both promoters were characterized genetically. RNase III reduces 1.9 kb and 3.7 kb transcript levels and stability, and corresponding effects are seen with genetic fusions. These detailed studies enabled us to show that the first 378 nucleotides of the rnc transcript comprise a portable RNA stability element (rncO) that contains all of the cis-acting elements required for RNase III-initiated decay of the rnc mRNA as well as the heterologous lacZ transcript. Moreover, mutations in rncO that block RNase III cleavage also block control, showing that RNase III initiates mRNA decay by cleaving at a single site.
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Matsunaga J, Simons EL, Simons RW. RNase III autoregulation: structure and function of rncO, the posttranscriptional "operator". RNA (NEW YORK, N.Y.) 1996; 2:1228-1240. [PMID: 8972772 PMCID: PMC1369450] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
Expression of the Escherichia coli rnc-era-recO operon is regulated posttranscriptionally by ribonuclease III (RNase III), encoded in the rnc gene. RNase III initiates rapid decay of the rnc operon mRNA by cleaving a double-stranded region of the rnc leader. This region, termed rncO, is portable, conferring stability and RNase III regulation to heterologous RNAs. Here, we report the detailed analysis of rncO structure and function. The first 215 nt of the rnc leader are sufficient for its function. Dimethylsulfate (DMS) modification in vivo revealed distinct structural elements in this region: a 13-nt single-stranded 5' leader, followed by a 6-bp stem-loop structure (I), a larger stem-loop structure (II) containing the RNase III site, a single-stranded region containing the rnc translation initiation site, and a small stem-loop structure (III) at the 3' terminus of rncO, wholly within the rnc coding region. Genetic analysis revealed the function of these structural elements. The single-stranded leader is not required for stability or RNase III control, stem-loop II is required only for RNase III control, and both stem-loops I and III are required for stability. Stem-loop II effectively serves only as the site at which RNase III cleaves to remove stem-loop I and thereby initiates decay, after which RNase III plays no role. Mutations at the cleavage site underscore the importance of base pairing for efficient RNase III attack. When stem-loops I and II were replaced with an artificial hairpin structure, stability was restored only partially, but was restored almost fully when a single-stranded leader was also added.
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Sussman JK, Simons EL, Simons RW. Escherichia coli translation initiation factor 3 discriminates the initiation codon in vivo. Mol Microbiol 1996; 21:347-60. [PMID: 8858589 DOI: 10.1046/j.1365-2958.1996.6371354.x] [Citation(s) in RCA: 107] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
In a genetic selection designed to isolate Escherichia coli mutations that increase expression of the IS 10 transposase gene (tnp), we unexpectedly obtained viable mutants defective in translation initiation factor 3 (IF3). Several lines of evidence led us to conclude that transposase expression, per se, was not increased. Rather, these mutations appear to increase expression of the tnp'-'lacZ gene fusions used in this screen, by increasing translation initiation at downstream, atypical initiation codons. To test this hypothesis we undertook a systematic analysis of start codon requirements and measured the effects of IF3 mutations on initiation from various start codons. Beginning with an efficient translation initiation site, we varied the AUG start codon to all possible codons that differed from AUG by one nucleotide. These potential start codons fall into distinct classes with regard to translation efficiency in vivo: Class I codons (AUG, GUG, and UUG) support efficient translation; Class IIA codons (CUG, AUU, AUC, AUA, and ACG) support translation at levels only 1-3% that of AUG; and Class IIB codons (AGG and AAG) permit levels of translation too low for reliable quantification, importantly, the IF3 mutations had no effect on translation from Class I codons, but they increased translation from Class II codons 3-5-fold, and this same effect was seen in other gene contexts. Therefore, IF3 is generally able to discriminate between efficient and inefficient codons in vivo, consistent with earlier in vitro observations. We discuss these observations as they relate to IF3 autoregulation and the mechanism of IF3 function.
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Simons EL, Rasmussen DT. Skull of Catopithecus browni, an early tertiary catarrhine. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY 1996; 100:261-92. [PMID: 8771315 DOI: 10.1002/(sici)1096-8644(199606)100:2<261::aid-ajpa7>3.0.co;2-#] [Citation(s) in RCA: 41] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
Fossil crania from quarry L-41, Fayum, Egypt, representing Catopithecus browni, a primate similar in size to callitrichids but with a catarrhine dental formula, provide the geologically earliest record of an anthropoidean skull. Catopithecus had postorbital closure developed to the stage seen in extant anthropoideans, with direct contact between zygomatic plate and maxillary tuber, isolating an anterior orbital fissure from the inferior orbital fissure. The auditory region also resembles that of later anthropoideans: The posterior carotid foramen is placed adjacent to the jugular fossa; a large promontory canal crosses the promontorium; and the annular ectotympanic is fused ventrally to the bulla. The incisors and canines show an assemblage of features found only among modern anthropoideans and adapoids. The face is characterized by a relatively deep maxilla, broad ascending wing of the premaxilla, and long nasal bones, yielding a moderate muzzle similar to that of Aegyptopithecus. The small braincase bears an anteriorly broad frontal trigon and a posteriorly developed sagittal crest. The mandibular symphysis is unfused even in mature adults. The encephalization quotient (EQ) probably falls within the range of Eocene prosimians, much lower than the EQs of Neogene anthropoideans.
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Wunderlich RE, Simons EL, Jungers WL. New pedal remains of Megaladapis and their functional significance. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY 1996; 100:115-39. [PMID: 8859959 DOI: 10.1002/(sici)1096-8644(199605)100:1<115::aid-ajpa11>3.0.co;2-3] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
New remains of Megaladapis from the caves within the Ankarana Range of northern Madagascar and the cave site of Ankilitelo near Toliara in southwestern Madagascar add considerably to the present sample of pedal remains for this genus. Here we describe and analyze the new pedal material and discuss the function of the Megaladapis foot in terms of positional behavior and substrate use. The northern specimens belong to the M. madagascariensis /M. grandidieri group in terms of size and morphology whereas the new southwestern fossils are assigned to M. madagascariensis. The new specimens demonstrate that the small and intermediate sized M. madagascariensis and M. grandidieri were very similar in anatomy and inferred locomotor function, findings that also support the prior suggestion that they belong to a single widespread subgenus (Megaladapis). The new fossils provide the first examples of many pedal elements and present the first opportunity to analyze the whole pedal complex from associated remains. The foot of Megaladapis is distinctive among primates in numerous features. Intrinsic proportions of the hindlimb indicate that the foot is relatively longer than that of any other primate. The first complete calcanei reveal a large and highly modified hindfoot. The calcaneus is reduced distally, indicating an emphasis on climbing over leaping or quadrupedal walking and running. Proximally, a large, medially directed calcaneal tuberosity suggests both a strong inversion component to plantarflexion and a well-developed abductor mechanism and recalls the calcaneal morphology of the larger lorisines in some respects. Talar shape is consistent with considerable tibial rotation during plantarflexion and dorsiflexion. The subtalar joint is designed to emphasize supination/pronation and medial/lateral rotation over proximodistal translation. The distal tarsals are extremely reduced in length, and they form a high transverse arch and a serial tarsus; this configuration promotes inversion/eversion at the transverse tarsal joint. The phalanges are long and moderately curved, and the hallux is very long, robust, and abducted. Pedal morphology suggests that Megaladapis (subgenus Megaladapis) was well adapted to exploit an arboreal environment.(ABSTRACT TRUNCATED)
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Shoshani J, Groves CP, Simons EL, Gunnell GF. Primate phylogeny: morphological vs. molecular results. Mol Phylogenet Evol 1996; 5:102-54. [PMID: 8673281 DOI: 10.1006/mpev.1996.0009] [Citation(s) in RCA: 144] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Our comparative study of morphological (our data on selected living primates) and molecular characters (from the literature) confirms that, overall, phylogenetic reconstructions of Primates, and consequently their classifications, are more similar than dissimilar. When data from fossil Primates are incorporated, there may be several possible relationships among living Primates; the difference between most of them hinges mainly on the position of Tarsius. In one hypothesis, tarsiers are closely related to lemurs and lorises, and thus Primates is divided into Prosimii [lorises, lemurs, and tarsiers] and Anthropoidea [Platyrrhini and Catarrhini, i.e., monkeys, apes, and humans]. Two additional alternatives are that Tarsius is a sister group to the clade embracing lorises + lemurs and Anthropoidea and that in which all three lineages (Tarsius, lorises + lemurs, and Anthropoidea) form a polychotomy. In another hypothesis, tarsiers are closely related to anthropoids, giving these two branches: Strepsirhini [lemurs, lorises] and Haplorhini [tarsiers and Anthropoidea (Platyrrhini, the New World monkeys, and Catarrhini, Old World monkeys and Hominoidea)]. The first three alternatives gain some support from the fossil record, and the fourth from morphology of the living Tarsius and molecular data. It is emphasized that the morphological characters employed in this study for Tarsius are based on the only surviving genus of once-diverse tarsiiform primates known from the Eocene, and, although considered a "living fossil," it cannot represent all of them. Furthermore, Tarsius embodies derived features of its own which may affect its systematic position, but not necessarily the position of Tarsiiformes. Although the early Tertiary adapoids might have more nearly resembled anthropoids in their biochemistry and placental developments, this hypothesis is not testable from fossils, and any inferred relationships here must be based on characters of skeletal anatomy. Alternatively, anthropoids may be derived from certain omomyids or from some as yet undiscovered Eocene African taxon. Close relationships among Homo, Pan, and Gorilla have been confirmed during recent decades; Pongo is the sister group to this trichotomy. With increasing molecular data, Homo and Pan appear to be closer to each other than to any other living hominid taxon. Gorilla is a sister group to the Homo-Pan clade and Pongo is a sister group to all of them. Morphologists have given limited evidence for such a dichotomous grouping. In this study, we support the Homo-Pan clade, although with characters not as strong as for other clades.
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Anderson PE, Matsunaga J, Simons EL, Simons RW. Structure and regulation of the Salmonella typhimurium rnc-era-recO operon. Biochimie 1996; 78:1025-34. [PMID: 9150881 DOI: 10.1016/s0300-9084(97)86726-0] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
The Escherichia coli rnc-era-recO operon encodes ribonuclease III (RNase III; a dsRNA endonuclease involved in rRNA and mRNA processing and decay), Era (an essential G-protein of unknown functions and RecO (involved in the RecF homologous recombination pathway). Expression of the rnc and era genes is negatively autoregulated: RNase III cleaves the rncO 'operator' in the untranslated leader, destabilizing the operon mRNA. As part of a larger effort to understand RNase III and Era structure and function, we characterized rnc operon structure, function and regulation in the closely related bacterium Salmonella typhimurium. Construction of a S typhimurium strain conditionally defective for RNase III and Era expression showed that Era is essential for cell growth. This mutant strain also enabled selection of recombinant clones containing the intact S typhimurium rnc-era-recO operon, whose nucleotide sequence, predicted protein sequence, and predicted rncO RNA secondary structure were all highly conserved with those of E coli. Furthermore, genetic and biochemical analysis revealed that S typhimurium rnc gene expression is negatively autoregulated by a mechanism very similar or identical to that in E coli, and that the cleavage specificities of RNase IIIs.t. and RNase IIIE.c. are indistinguishable with regard to rncO cleavage and S typhimurium 23S rRNA fragmentation in vivo.
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Jungers WL, Godfrey LR, Simons EL, Chatrath PS. Subfossil Indri indri from the Ankarana Massif of northern Madagascar. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY 1995; 97:357-66. [PMID: 7485433 DOI: 10.1002/ajpa.1330970403] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
Subfossil specimens of Indri indri have been recovered recently from the Ankarana Massif cave system in the far north of Madagascar. Taken together with material from the central highland site of Ampasambazimba, the range of this species appears to have once included much of the northern half of the island and to have extended north and west beyond the eastern rainforest (not unlike Hapalemur simus). It is probable that forest corridors connected the subfossil localities to the current range at some time in the past. Climatic desiccation (fluctuating or long-term) and/or human degradation of the environment may have created the disjunct distributions of living and subfossil I. indri. It is also possible that I. indri once included populations or subspecies that were better adapted to dry forest, woodland, or mosaic environments, habitats very different from those occupied by their living conspecifics. Such adaptive diversity would have been similar to that of Propithecus diadema which today has subspecies in the montane forests and one (P.d. perrieri) in the dry forests of the northeast. These discoveries add new information on range extensions to the distributional database for the primates of Madagascar, and illustrate the piecemeal process of their extinctions.
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Fleagle JG, Simons EL. Limb skeleton and locomotor adaptations of Apidium phiomense, an Oligocene anthropoid from Egypt. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY 1995; 97:235-89. [PMID: 7573376 DOI: 10.1002/ajpa.1330970303] [Citation(s) in RCA: 68] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Apidium phiomense is the most common primate from the early Oligocene deposits of Fayum, Egypt. It is known from hundreds of dental remains and dozens of skeletal remains, including numerous representatives of the long bones of the forelimb and hindlimb. Apidium phiomense was a small (1,600 g) arboreal quadruped. The forelimb bones of this species show features characteristic of arboreal quadrupeds and lack characteristic features found in the forelimb bones of vertial clingers, terrestrial quadrupeds, or suspensory species. The pelvis and hindlimb bones show numerous adaptations for leaping from a quadrupedal position. In general, Apidium lacks characteristic features of either cercopithecoid monkeys or hominoid apes. Overall, the skeleton shows greatest similarities to the same elements of small platyrrhines such as Saimiri and is also very similar to the hypothetical morphotype for ancestral platyrrhine. The skeleton of Apidium phiomense is the most primitive anthropoid postcranial skeleton known.
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Simons EL. Skulls and anterior teeth of Catopithecus (primates:Anthropoidea) from the Eocene and anthropoid origins. Science 1995; 268:1885-8. [PMID: 7604261 DOI: 10.1126/science.7604261] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Recent finds of Catopithecus browni at an upper Eocene fossil site in the Fayum depression, Egypt, reveal features of the earliest higher primates. This basal anthropoidean shows a set of derived cranial and dental features that first occur in combination in this fossil. Old World Anthropoidea or Catarrhini can now be traced back to Catopithecus in Egypt. Size, shape, orientation of incisors and canines, and other features of the teeth and skull relate Catopithecus both to later Anthropoidea and to the early and middle Eocene cercamoniine adapoids. Most defining characteristics of higher primates cannot be documented earlier than the late Eocene of Africa.
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Simons EL, Bown TM. Ptolemaiida, a new order of Mammalia--with description of the cranium of Ptolemaia grangeri. Proc Natl Acad Sci U S A 1995; 92:3269-73. [PMID: 11607526 PMCID: PMC42147 DOI: 10.1073/pnas.92.8.3269] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
All records of the exotic mammalian family Ptolemaiidae are known from 182 m of section in the lower to middle parts of the upper Eocene and lower Oligocene Jebel Qatrani Formation, Fayum Depression, Egypt. Previous tentative assignments of ptolemaiid affinity have suggested that these animals are allied with the primitive suborder Pantolesta (currently placed in the order Cimolesta). Though perhaps ultimately derived from an unknown member of that group, the likelihood that ptolemaiids constitute a distinct group is considered, and analysis of all known materials of Ptolemaia, Qarunavus, and Cleopatrodon demonstrates that these genera belong in their own order, the Ptolemaiida, described here. The morphologically unique dentition and only known ptolemaiid cranium, that of Ptolemaia grangeri, is described. Although Qarunavus and Cleopatrodon show some similarities in primitive characters to European merialine Paroxyclaenidae (suborder Pantolesta), their affinities clearly lie with Ptolemaia and the Ptolemaiida.
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Ma CK, Kolesnikow T, Rayner JC, Simons EL, Yim H, Simons RW. Control of translation by mRNA secondary structure: the importance of the kinetics of structure formation. Mol Microbiol 1994; 14:1033-47. [PMID: 7536290 DOI: 10.1111/j.1365-2958.1994.tb01337.x] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
RNA secondary structure is important in a wide variety of biological processes, but relatively little is known about the pathways and kinetics of RNA folding. When the IS10 transposase (tnp) gene is transcribed from a promoter outside the element, little increase in tnp expression is observed. This protection from outside transcription (pot) occurs at the translational level, presumably resulting from mRNA secondary structure proposed to sequester the tnp ribosome-binding site. Here, we confirm the pot RNA structure and show that it blocks 30S ribosomal subunit binding in vitro. Point mutations that abolish protection in vivo map to the pot structure. Surprisingly, these pot mutations do not severely alter the pot secondary structure or increase 30S subunit binding in vitro, except in one case. Using an oligonucleotide hybridization assay, we show that most of the pot mutations slow the kinetics of pot structure formation, with little or no effect on the inhibitory function of the final structure. Moreover, a suppressor mutation reverses this effect. We propose a pathway for pot mRNA folding that is consistent with the mutations and implicates the formation of important kinetic intermediates. The significance of these observations for the RNA folding problem in general is discussed.
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Simons EL, Rasmussen DT. A remarkable cranium of Plesiopithecus teras (Primates, Prosimii) from the Eocene of Egypt. Proc Natl Acad Sci U S A 1994; 91:9946-50. [PMID: 7937923 PMCID: PMC44934 DOI: 10.1073/pnas.91.21.9946] [Citation(s) in RCA: 79] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023] Open
Abstract
Between 1991 and 1993 specimens of a highly distinctive primate, named Plesiopithecus teras [Simons, E.L. (1992) Proc. Natl. Acad. Sci. USA 89, 10743-10747], were found at site L-41 in late Eocene deposits of the Fayum Depression, Egypt. The most important of these specimens consists of a nearly complete skull, which facilitates the evaluation of affinities of this primate. Characteristics of the known material now demonstrate that Plesiopithecus is a prosimian, although mandibular molar morphology, in particular, bears similarity to that in molars of archaic members of Anthropoidea. Plesiopithecus has a postorbital bar but lacks postorbital closure, it has upper molars without hypocones, and it may retain four lower premolars. Its familial rank was considered incertae sedis by Simons [Simons, E.L. (1992) Proc. Natl. Acad. Sci. USA 89, 10743-10747]; it can now be demonstrated that Plesiopithecus justifies establishment of a new family and superfamily. The new superfamily apparently lies closer to the toothcomb prosimians (strepsirhines) than to any other known primate group. Under this interpretation the enlarged, procumbent tooth in the jaw of Plesiopithecus is homologous to either the lateral incisor or the canine of the prosimian toothcomb.
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Ravosa MJ, Simons EL. Mandibular growth and function in Archaeolemur. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY 1994; 95:63-76. [PMID: 7998602 DOI: 10.1002/ajpa.1330950106] [Citation(s) in RCA: 56] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Ontogenetic changes in the morphology of the mandibular symphysis are described in Archaeolemur so as to infer the functional significance of symphyseal fusion in this subfossil Malagasy lemur. The first regions of the symphysis to show a more complex morphology were the lower and anterior borders of the joint and, to a lesser extent, the lingual borders of the superior and inferior transverse tori. During growth, these regions became increasingly rugose and encroached upon a centrally located, smooth, "oval" region, which may have been a principal pathway for neurovascular structures communicating with the unfused joint. In subadults, the symphysis was completely fused except for the lingual surface of the inferior transverse torus, where a patent suture and potential space were present between dentaries. Thus, in Archaeolemur there was an age- and size-related pattern of increased symphyseal ossification or fusion that was complete by adulthood. The morphology of the interlocking bony processes and the sequence of ossification in the symphysis suggest that increased dorsoventral shear stress during mastication was the most likely determinant of symphyseal fusion in Archaeolemur. The allometric pattern of greater symphyseal fusion may be linked to the presence of relatively greater dorsoventral shear in adults due to an increased recruitment of balancing-side jaw-muscle force. There is little indication that the symphysis of juvenile Archaeolemur was buttressed to resist forces associated with "wishboning" during mastication or vertical bending during incision. Our observations, as well as those of others, suggest that symphyseal fusion in primates occurs initially as a response to increased dorsoventral shear during mastication. Therefore, wishboning stress might only become a major determinant of symphyseal form and function in those taxa that develop a fused symphysis to counter increased dorsoventral shear.
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Abstract
Subfossils of a giant form of aye-aye are found at scattered sites in the south and southwest of the island of Madagascar, outside the known distribution of the living, or common, aye-aye. The subfossil aye-aye, named Daubentonia robusta, has massive, robust limb bones implying a species with a body weight 2.5-5 times as great as that of the living species. A mystery exists regarding how a species this large with the same specializations of teeth and manus as the living species could have existed in a xeric environment.
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Abstract
Between 1987 and 1991 recent field seasons in the Fayum Depression of Egypt have yielded five species and genera of primates that were earlier unknown. Three of these species and genera are described below. All these genera and species are known only from Fayum site L-41, which has been dated as of late Eocene age. In the Fayum, these 5 species from L-41 are added to 3 kinds of prosimians (1 species formally described) and 11 earlier named species of Anthropoidea. When certain undescribed species are added, the total of known Fayum primate species comes to 21, belonging to at least 10 genera, genera that, in turn, could belong to as many as seven families. This arguably represents more taxonomic diversity of primates, especially higher primates, than has been demonstrated before in one so spatially and temporally limited area. These facts argue that an important, perhaps primary, radiation of anthropoideans took place in the African Eocene.
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Stanyon R, Wienberg J, Simons EL, Izard MK. A third karyotype for Galago demidovii suggests the existence of multiple species. Folia Primatol (Basel) 1992; 59:33-8. [PMID: 1473778 DOI: 10.1159/000156639] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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Simons EL, Holroyd PA, Bown TM. Early tertiary elephant-shrews from Egypt and the origin of the Macroscelidea. Proc Natl Acad Sci U S A 1991; 88:9734-7. [PMID: 11607230 PMCID: PMC52794 DOI: 10.1073/pnas.88.21.9734] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Recent expeditions to the Fayum Depression, Egypt, have made possible the discovery of mandibles and a maxilla of a new genus and species of late Eocene elephant-shrew as well as initial evidence of the upper dentition of the early Oligocene taxon Metoldobotes. These fossils demonstrate that macroscelideans underwent a significant radiation in the Early Tertiary of Africa. Two new subfamilies are recognized and described. These Tertiary macroscelideans are the most primitive elephant-shrews known and indicate that previous hypotheses of a close phylogenetic relationship between macroscelideans and either lagomorphs, erinaceotans, or tree-shrews are unlikely. Rather, the dental anatomy of the Fayum macroscelideans provides evidence for a derivation of the order from within the Condylarthra.
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