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26
Trogdon JG, Weir WH, Shai S, Mucha PJ, Kuo TM, Meyer AM, Stitzenberg KB. Comparing Shared Patient Networks Across Payers. J Gen Intern Med 2019;34:2014-2020. [PMID: 30945065 PMCID: PMC6816773 DOI: 10.1007/s11606-019-04978-9] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/11/2018] [Revised: 11/21/2018] [Accepted: 02/19/2019] [Indexed: 11/24/2022]
27
Barnett I, Malik N, Kuijjer ML, Mucha PJ, Onnela JP. EndNote: Feature-based classification of networks. NETWORK SCIENCE (CAMBRIDGE UNIVERSITY PRESS) 2019;7:438-444. [PMID: 31984135 PMCID: PMC6980283 DOI: 10.1017/nws.2019.21] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
28
Robinson JI, Weir WH, Crowley JR, Hink T, Reske KA, Kwon JH, Burnham CAD, Dubberke ER, Mucha PJ, Henderson JP. Metabolomic networks connect host-microbiome processes to human Clostridioides difficile infections. J Clin Invest 2019;129:3792-3806. [PMID: 31403473 DOI: 10.1172/jci126905] [Citation(s) in RCA: 55] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2019] [Accepted: 06/11/2019] [Indexed: 12/15/2022]  Open
29
Lee HW, Malik N, Shi F, Mucha PJ. Social clustering in epidemic spread on coevolving networks. Phys Rev E 2019;99:062301. [PMID: 31330685 PMCID: PMC6790070 DOI: 10.1103/physreve.99.062301] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2017] [Indexed: 11/29/2022]
30
Gates KM, Fisher ZF, Arizmendi C, Henry TR, Duffy KA, Mucha PJ. Assessing the robustness of cluster solutions obtained from sparse count matrices. Psychol Methods 2019;24:675-689. [PMID: 30742473 DOI: 10.1037/met0000204] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
31
Granell C, Mucha PJ. Epidemic spreading in localized environments with recurrent mobility patterns. Phys Rev E 2018;97:052302. [PMID: 29906863 PMCID: PMC6195814 DOI: 10.1103/physreve.97.052302] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2017] [Indexed: 11/08/2022]
32
Kirk JM, Kim SO, Inoue K, Smola MJ, Lee DM, Schertzer MD, Wooten JS, Baker AR, Sprague D, Collins DW, Horning CR, Wang S, Chen Q, Weeks KM, Mucha PJ, Calabrese JM. Functional classification of long non-coding RNAs by k-mer content. Nat Genet 2018;50:1474-1482. [PMID: 30224646 PMCID: PMC6262761 DOI: 10.1038/s41588-018-0207-8] [Citation(s) in RCA: 121] [Impact Index Per Article: 20.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2017] [Accepted: 07/24/2018] [Indexed: 12/30/2022]
33
Heroy S, Taylor D, Shi FB, Forest MG, Mucha PJ. RIGID GRAPH COMPRESSION: MOTIF-BASED RIGIDITY ANALYSIS FOR DISORDERED FIBER NETWORKS. MULTISCALE MODELING & SIMULATION : A SIAM INTERDISCIPLINARY JOURNAL 2018;16:1283-1304. [PMID: 30450018 PMCID: PMC6234004 DOI: 10.1137/17m1157271] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
34
Li Z, Mucha PJ, Taylor D. NETWORK-ENSEMBLE COMPARISONS WITH STOCHASTIC REWIRING AND VON NEUMANN ENTROPY. SIAM JOURNAL ON APPLIED MATHEMATICS 2018;78:897-920. [PMID: 30319156 PMCID: PMC6181241 DOI: 10.1137/17m1124218] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
35
Lee HW, Malik N, Mucha PJ. Evolutionary prisoner's dilemma games coevolving on adaptive networks. JOURNAL OF COMPLEX NETWORKS 2018;6:1-23. [PMID: 29732158 PMCID: PMC5931405 DOI: 10.1093/comnet/cnx018] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
36
Strano E, Giometto A, Shai S, Bertuzzo E, Mucha PJ, Rinaldo A. The scaling structure of the global road network. ROYAL SOCIETY OPEN SCIENCE 2017;4:170590. [PMID: 29134071 PMCID: PMC5666254 DOI: 10.1098/rsos.170590] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2017] [Accepted: 09/18/2017] [Indexed: 05/30/2023]
37
Weir WH, Emmons S, Gibson R, Taylor D, Mucha PJ. Post-Processing Partitions to Identify Domains of Modularity Optimization. ALGORITHMS 2017;10. [PMID: 29046743 PMCID: PMC5642987 DOI: 10.3390/a10030093] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
38
Taylor D, Caceres RS, Mucha PJ. Super-Resolution Community Detection for Layer-Aggregated Multilayer Networks. PHYSICAL REVIEW. X 2017;7:031056. [PMID: 29445565 PMCID: PMC5809009 DOI: 10.1103/physrevx.7.031056] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
39
Taylor D, Myers SA, Clauset A, Porter MA, Mucha PJ. EIGENVECTOR-BASED CENTRALITY MEASURES FOR TEMPORAL NETWORKS. MULTISCALE MODELING & SIMULATION : A SIAM INTERDISCIPLINARY JOURNAL 2017;15:537-574. [PMID: 29046619 PMCID: PMC5643020 DOI: 10.1137/16m1066142] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
40
Aikat J, Carsey TM, Fecho K, Jeffay K, Krishnamurthy A, Mucha PJ, Rajasekar A, Ahalt SC. Scientific Training in the Era of Big Data: A New Pedagogy for Graduate Education. BIG DATA 2017;5:12-18. [PMID: 28287837 DOI: 10.1089/big.2016.0014] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
41
Malik N, Shi F, Lee HW, Mucha PJ. Transitivity reinforcement in the coevolving voter model. CHAOS (WOODBURY, N.Y.) 2016;26:123112. [PMID: 28039984 PMCID: PMC5848690 DOI: 10.1063/1.4972116] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2016] [Accepted: 11/29/2016] [Indexed: 06/06/2023]
42
Entwisle B, Williams NE, Verdery AM, Rindfuss RR, Walsh SJ, Malanson GP, Mucha PJ, Frizzelle BG, McDaniel PM, Yao X, Heumann BW, Prasartkul P, Sawangdee Y, Jampaklay A. Climate Shocks and Migration: An Agent-Based Modeling Approach. POPULATION AND ENVIRONMENT 2016;38:47-71. [PMID: 27594725 PMCID: PMC5004973 DOI: 10.1007/s11111-016-0254-y] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
43
Taylor D, Shai S, Stanley N, Mucha PJ. Enhanced Detectability of Community Structure in Multilayer Networks through Layer Aggregation. PHYSICAL REVIEW LETTERS 2016;116:228301. [PMID: 27314740 PMCID: PMC5125641 DOI: 10.1103/physrevlett.116.228301] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2015] [Indexed: 05/24/2023]
44
Stanley N, Shai S, Taylor D, Mucha PJ. Clustering network layers with the strata multilayer stochastic block model. IEEE TRANSACTIONS ON NETWORK SCIENCE AND ENGINEERING 2016;3:95-105. [PMID: 28435844 PMCID: PMC5400296 DOI: 10.1109/tnse.2016.2537545] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
45
Malik N, Bookhagen B, Mucha PJ. Spatiotemporal patterns and trends of Indian monsoonal rainfall extremes. GEOPHYSICAL RESEARCH LETTERS 2016;43:1710-1717. [PMID: 27909349 PMCID: PMC5125774 DOI: 10.1002/2016gl067841] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
46
Verdery AM, Mouw T, Bauldry S, Mucha PJ. Correction: Network Structure and Biased Variance Estimation in Respondent Driven Sampling. PLoS One 2016;11:e0148006. [PMID: 26799651 PMCID: PMC4723124 DOI: 10.1371/journal.pone.0148006] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
47
Verdery AM, Mouw T, Bauldry S, Mucha PJ. Network Structure and Biased Variance Estimation in Respondent Driven Sampling. PLoS One 2015;10:e0145296. [PMID: 26679927 PMCID: PMC4682989 DOI: 10.1371/journal.pone.0145296] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2013] [Accepted: 12/02/2015] [Indexed: 11/19/2022]  Open
48
Parker KS, Wilson JD, Marschall J, Mucha PJ, Henderson JP. Network Analysis Reveals Sex- and Antibiotic Resistance-Associated Antivirulence Targets in Clinical Uropathogens. ACS Infect Dis 2015;1:523-532. [PMID: 26985454 PMCID: PMC4788272 DOI: 10.1021/acsinfecdis.5b00022] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2015] [Indexed: 01/29/2023]
49
Jeub LGS, Balachandran P, Porter MA, Mucha PJ, Mahoney MW. Think locally, act locally: detection of small, medium-sized, and large communities in large networks. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015;91:012821. [PMID: 25679670 PMCID: PMC5125638 DOI: 10.1103/physreve.91.012821] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2014] [Indexed: 06/04/2023]
50
Wilson JD, Wang S, Mucha PJ, Bhamidi S, Nobel AB. A testing based extraction algorithm for identifying significant communities in networks. Ann Appl Stat 2014. [DOI: 10.1214/14-aoas760] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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