Functional delineation of rice MADS29 reveals its role in embryo and endosperm development by affecting hormone homeostasis

Rice MADS29 has recently been reported to cause programmed cell death of maternal tissues, the nucellus, and the nucellar projection during early stages of seed development. However, analyses involving OsMADS29 protein expression domains and characterization of OsMADS29 gain-of-function and knockdown phenotypes revealed novel aspects of its function in maintaining hormone homeostasis, which may have a role in the development of embryo and plastid differentiation and starch filling in endosperm cells. The MADS29 transcripts accumulated to high levels soon after fertilization; however, protein accumulation was found to be delayed by at least 4 days. Immunolocalization studies revealed that the protein accumulated initially in the dorsal-vascular trace and the outer layers of endosperm, and subsequently in the embryo and aleurone and subaleurone layers of the endosperm. Ectopic expression of MADS29 resulted in a severely dwarfed phenotype, exhibiting elevated levels of cytokinin, thereby suggesting that cytokinin biosynthesis pathway could be one of the major targets of OsMADS29. Overexpression of OsMADS29 in heterologous BY2 cells was found to mimic the effects of exogenous application of cytokinins that causes differentiation of proplastids to starch-containing amyloplasts and activation of genes involved in the starch biosynthesis pathway. Suppression of MADS29 expression by RNAi severely affected seed set. The surviving seeds were smaller in size, with developmental abnormalities in the embryo and reduced size of endosperm cells, which also contained loosely packed starch granules. Microarray analysis of overexpression and knockdown lines exhibited altered expression of genes involved in plastid biogenesis, starch biosynthesis, cytokinin signalling and biosynthesis.

Managing nitrogen inputs into seagrass meadows near a coastal city: flow-on from research to environmental improvement plans

Increased human habitation has led to a 30 to 50-fold increase in nutrient loads to the coastal waters of Adelaide, resulting in the loss of over 5000 ha of seagrass meadows. The rate of loss since the 1940s has been irregular, averaging 85 ha yr(-1), marked by a substantial peak between 1971 and 1977. A modelling approach allowed comparison of the annual input with the annual uptake rates for the different biotic components in the seagrass bed. In 2005, the estimated uptake of ammonium (465 t yr(-1)) and nitrate (3.04 t yr(-1)) by the seagrass and associated epiphytes in the Adelaide region accounted for 31% of the ammonium and <1% of the nitrate that is currently discharged into the coastal waters. Environment Improvement Programs, such as the one implemented in 1996, may reduce the total nitrogen loads to 700 t yr(-1), possibly stemming further losses and facilitating recolonisation of new seagrass.

Uptake and resource allocation of ammonium and nitrate in temperate seagrasses Posidonia and Amphibolis

Ecologically relevant estimates of seasonal variability in nitrogen uptake and allocation in two species of temperate seagrasses were obtained using in situ isotope-labelling approach. Significantly higher uptake rates of ammonium by leaves, roots and epiphytes of Amphibolis than Posidonia were observed. Overall, root uptake rates were lower than other components. Effect of season was not significant for leaves, roots or epiphytes of the two species. However, plankton uptake varied seasonally with higher rates in winter (0.98 mg N g(-1)D Wh(-1)). In contrast, nitrate uptake rates for various components were significantly affected by seasons. Uptake rates by plankton were highest ranging from 0.003 mg N g(-1)D Wh(-1) (summer, Amphibolis) to 0.69 mg N g(-1)DWh(-1) (winter, Posidonia). Uptake of nitrate by roots was negligible. Biotic uptake rates for nitrate were an order of magnitude slower than ammonium, demonstrating an affinity for ammonium over nitrate as a preferred inorganic nitrogen source. Adelaide coastal waters have lost over 5000 ha of seagrasses, much of this attributed to nutrient inputs from wastewater, industrial and stormwater. Managing these inputs into future requires better understanding of the fate of nutrients, particularly biological uptake. This study attempts to quantify uptake rates of nitrogen by seagrasses.

Extramedullary paraspinal hematopoiesis in hereditary spherocytosis

Hereditary spherocytosis (HS) is a common inherited hemolytic anemia due to red cell membrane defects. Extramedullary hematopoiesis is a compensatory response to insufficient bone marrow blood cell production. The preferred sites of extramedullary hematopoietic involvement are the spleen, liver and lymph nodes; but in HS, the posterior paravertebral mediastinum is also commonly involved. We report a case of a 50-year-old male who presented to us in respiratory distress and with bilateral paravertebral posterior mediastinal masses, which on trucut biopsy were found to be extra-hematopoietic masses; and the patient was found to have hereditary spherocytosis.

Environmental effects of dredging on sediment nutrients, carbon and granulometry in a tropical estuary

This monitoring study encompassed a period prior to dredging, during dredging and post dredging between July 1999 to June 2000 in Ponggol estuary located along the northeastern coast of Singapore. Mean concentrations of sediment nutrients in mg x Kg(-1) (+/- standard error of means) prior to dredging, during dredging and post dredging were 9.75 +/- 4.24, 8.18 +/- 4.29 and 11.46 +/- 4.74 for ammonium, 0.08 +/- 0.05, 0.06 +/- 0.02 and 0.09 +/- 0.01 for nitrite, 0.04 +/- 0.04, 0.11 +/- 0.17 and 0.25 +/- 0.30 for nitrate, 4.83 +/- 3.48, 0.77 +/- 0.48 and 8.33 +/- 9.73 for phosphate respectively. Pre dredge, dredge and post dredge levels of total carbon (TC) were 18.5 +/- 3.7, 20.2 +/- 3.5 and 34.6 +/- 12.0, of total organic carbon (TOC) were 10.5 +/- 2.9, 19.5 +/- 3.6 and 34.6 +/- 12.0 and of total inorganic carbon (TIC) were 7.9 +/- 1.0, 0.7 +/- 0.4 and non detectable in the sediments, respectively. Both, sediment nutrients and carbon registered lower concentrations with onset of dredging, with the exception of nitrate and TOC. A shift in sedimentary carbon from inorganic carbon to organic carbon was also observed with the onset of the dredging activities when the organically enriched historically contaminated layer was exposed. Sediment granulometry showed that the sediments in the estuary were predominantly silt and clay prior to dredging, which changed to sand with onset of dredging. Silt load in the sediments was highest post-dredge. Sediment nutrients and sediment organic carbon were observed to associate with the finer fractions (silt and clay) of sediments. Finer fractions of sediments get resuspended during a dredging event and are dispersed spatially as the result of tides and water movements. Prior to this study, the potential for nutrient release and sediment granulometry due to dredging have been suggested, but there have been few studies of it, especially in the tropics. The baseline information gathered from this study could be used to work out effective management strategies to protect similar tropical ecosystems elsewhere, should there be no other alternative to dredging.

Spatio-temporal fluxes in particulate organic carbon in a tropical coastal lagoon

Temporal and spatial variations in particulate organic carbon (POC) in relation to primary production, chlorophyll a, phaeophytin, plankton abundance, secondary production and suspended particulate matter (SPM) were studied monthly for 1 year from April 1996 to March 1997 in a shallow tropical coastal lagoon on the southwest coast of India. Though temporal variations in all components were significant, spatial variabilities were not statistically significant. POC values range from 200 to 5690 mg C m(3) h(-1), while primary production, chlorophyll a, and phaeophytin varied between 0.02 and 14.53 mg C m(-3) h(-1), 0.87 and 23.11 mg m(-3) and 3.02 and 30.581 mg m(-3), respectively. Phytoplankton and zooplankton abundance varied from 0.01 to 655.5 x 10(5) no m(-3) and negligible to 7.08 x 10(5) no m(-3) respectively; secondary production from 10 to 490 mg C m(-3) and SPM between 0.38 and 74.43 x 10(4) mg m(-3) during this study. Temporally, postmonsoon months were observed to have the highest concentrations of POC in the lagoon waters. The bulk of the POC pool in the lagoon was composed of secondary producers (72%), followed by chlorophyll a (21%), phaeophytin (7%) and suspended particulate matter of inorganic origin (< 0.1%).

Environmental impacts of diesel fuel on bacteria and phytoplankton in a tropical estuary assessed using in situ mesocosms

Dissolved or dispersed petroleum hydrocarbon concentrations (DDPH) were monitored in Ponggol estuary, Singapore, fortnightly from July 1999 to June 2000. DDPH concentrations ranged from 4.4 to 248.9 microg l(-1) and 0.4 to 1099.7 microg l(-1) for surface and subsurface waters, respectively and with mean concentrations of 41.01 microg l(-1) in the water column. Absorbed or adsorbed petroleum hydrocarbon (AAPH) concentrations measured in sediments ranged from 20.6 to 541.0 mg kg(-1), with mean concentrations of 148.23 mg kg(-1). In situ mesocosm studies of bacteria and phytoplankton were based on field monitoring of environmentally measured concentrations of petroleum hydrocarbons, using diesel fuel as the source of contaminant. The mesocosm comprised of 25 L clear polycarbonate carboys incubated in situ for 6 days. Water and sediments from a clean site with undetectable levels of petroleum hydrocarbons were used in controls. The treatment mesocosms comprised of mean and highest concentrations of DDPH and AAPH. The study revealed signs of acute toxicity to autotrophs viz., phytoplankton and autotrophic bacteria in treatments simulating concentrations of diesel fuel found in the sediments. A stimulatory effect was seen at lower concentrations. Bacterial heterotrophs responded positively to all concentrations of diesel fuel because of the abundance of a carbon source, reduced grazing pressure and reduced competition for nutrients from phytoplankton.

Environmental impact of heavy metals from dredged and resuspended sediments on phytoplankton and bacteria assessed in in situ mesocosms

Past and on-going reclamation, dredging, construction and shipping activities impact Ponggol Estuary, located on the northeastern coast of Singapore. Tin, lead, nickel, cadmium, and copper in particulate and dissolved fractions and sediments ranged from ND (undetectable)-92 ppm, ND-303.2 ppm, ND-2818.4 ppm, ND-74.4 ppm and ND-1117.7 ppm, respectively. Intensive dredging activity during the monitoring period may have led to the resuspension and bioavailability of particulate metals. This was tested by the exposure of phytoplankton and bacteria in mesocosms to previously measured environmental levels of heavy metals and the contaminated sediments with the highest heavy metal concentrations from one of the impacted sites. The results showed significant copper toxicity to phytoplankton and autotrophic bacteria, followed by nickel and lead at all concentrations tested. Enhanced rates of heterotrophic bacterial production and total bacterial abundance were observed in treatments with higher metal concentrations. Among the various treatments, particulate and sediment metal concentrations were significantly different from those of the control. Mesocosms using contaminated sediments with the highest metal concentrations compared with the control showed a bioavailability of metals that resulted in the inhibition of phytoplankton and autotrophic bacteria. High concentrations of copper (5.52-11.35 mg L(-1)) and nickel (2.42-2.71 mg L(-1)) observed in the aqueous phase of treatment mesocosms, and attributed to release from the contaminated sediments could account for the toxicity to phytoplankton and autotrophic bacteria.

In situ microcosms to study the impact of heavy metals resuspended by dredging on periphyton in a tropical estuary

Ponggol estuary, located on the northeastern coast of Singapore, is heavily impacted by reclamation, dredging, construction and shipping. Tin, lead, nickel, cadmium, copper and zinc in the particulate and dissolved fraction and in sediments were monitored biweekly in the estuary from July 1999 to June 2000. The concentrations of tin, lead, nickel, cadmium, copper and zinc were observed to range from ND-92 ppm, ND-303 ppm, ND-2818 ppm, ND-74 ppm, ND-1117 ppm and ND-137000 ppm, respectively, in the dissolved, particulate and sediments fractions. Intensive dredging activity occurred during the monitoring period, and this may have led to the resuspension and increased bioavailability of particulate metals. Periphytic algae were established on glass slides and exposed to previously measured environmental levels of heavy metals using in situ estuarine microcosms. The toxicity of heavy metals in various fractions to periphytic algae was assessed from the changes in their chlorophyll a content. Cadmium had the least significant effect followed by lead, zinc, nickel, tin and copper at all concentrations tested. A reduction in periphyton biomass (with respect to controls) of 95-100% was observed for treatments with metals in particulate form. In addition, exposure to contaminated sediments for 3 days significantly decreased chlorophyll a by 90-99% compared to controls. High concentrations of zinc (9893-17240 mg l(-1)), copper (5-11 mg l(-1)) and cadmium (1-1.8 mg l(-1)) recorded in the aqueous phase of treatment microcosms, and attributed to release from the contaminated sediments, could account for the toxicity to periphyton.

UDP-galactose 4-epimerase from Escherichia coli: equilibrium unfolding studies

UDP-galactose 4-epimerase from Escherichia coli is a homodimer of 39 kDa subunit with non-covalently bound NAD acting as cofactor. The enzyme can be reversibly reactivated after denaturation and dissociation using 8 M urea at pH 7.0. There is a strong affinity between the cofactor and the refolded molecule as no extraneous NAD is required for its reactivation. Results from equilibrium denaturation using parameters like catalytic activity, circular-dichroism, fluorescence emission (both intrinsic and with extraneous fluorophore 1-aniline 8-naphthalene sulphonic acid), 'reductive inhibition' (associated with orientation of NAD on the native enzyme surface), elution profile from size-exclusion HPLC and light scattering have been compiled here. These show that inactivation, integrity of secondary, tertiary and quaternary structures have different transition mid-points suggestive of non-cooperative transition. The unfolding process may be broadly resolved into three parts: an active dimeric holoenzyme with 50% of its original secondary structure at 2.5 M urea; an active monomeric holoenzyme at 3 M urea with only 40% of secondary structure and finally further denaturation by 6 M urea leads to an inactive equilibrium unfolded state with only 20% of residual secondary structure. Thermodynamical parameters associated with some transitions have been quantitated. The results have been discussed with the X-ray crystallographic structure of the enzyme.

Prevalence of sputum-positive pulmonary tuberculosis in tribal and non-tribal populations of the Ashti and Karanja tahsils in Wardha district, Maharashtra State, India

SETTING

Ashti and Karanja tahsils, Wardha district, Maharashtra State, Central India.

OBJECTIVE

To find and compare the prevalence of bacillary positive pulmonary tuberculosis amongst the different tribes and in the non-tribal population.

DESIGN

Prevalence study of pulmonary tuberculosis by house-to-house survey of symptoms among tribal (n = 20596) and non-tribal (n = 93 670) populations aged 5 years and over, between September 1989 and November 1990.

RESULTS

The prevalence of smear and/or culture-positive tuberculosis/100000 population was 133 in the tribal and 144 in the non-tribal population. The difference in prevalence of symptomatic individuals and sputum-positive cases among the tribal and the non-tribal populations was statistically significant only in the symptomatic individuals/100000 (P = 0.01). The prevalence of cases in both groups was higher in males than females; however this difference was significant only in the tribal group (P = 0.05). Only two of the 46 tribes encountered, the Mana and Pawara tribes, showed a high prevalence, of 730 and 612/100000, respectively. The three other tribes with positive cases (the Gond group) had prevalences comparable to that of the nontribal population.

CONCLUSION

The prevalence of tuberculosis in tribal people was comparable to that of the non-tribal population.