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26
Singh P, Santoni S, This P, Péros JP. Genotype-Environment Interaction Shapes the Microbial Assemblage in Grapevine's Phyllosphere and Carposphere: An NGS Approach. Microorganisms 2018;6:microorganisms6040096. [PMID: 30248973 PMCID: PMC6313654 DOI: 10.3390/microorganisms6040096] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2018] [Revised: 09/10/2018] [Accepted: 09/19/2018] [Indexed: 11/26/2022]  Open
27
Salomez M, Subileau M, Vallaeys T, Santoni S, Bonfils F, Sainte-Beuve J, Intapun J, Granet F, Vaysse L, Dubreucq É. Microbial communities in natural rubber coagula during maturation: impacts on technological properties of dry natural rubber. J Appl Microbiol 2018;124:444-456. [PMID: 29222942 DOI: 10.1111/jam.13661] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2017] [Revised: 11/03/2017] [Accepted: 11/29/2017] [Indexed: 11/29/2022]
28
Rode NO, Holtz Y, Loridon K, Santoni S, Ronfort J, Gay L. How to optimize the precision of allele and haplotype frequency estimates using pooled-sequencing data. Mol Ecol Resour 2017;18:194-203. [PMID: 28977733 DOI: 10.1111/1755-0998.12723] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2017] [Revised: 09/12/2017] [Accepted: 09/14/2017] [Indexed: 11/30/2022]
29
Sauvage C, Rau A, Aichholz C, Chadoeuf J, Sarah G, Ruiz M, Santoni S, Causse M, David J, Glémin S. Domestication rewired gene expression and nucleotide diversity patterns in tomato. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2017;91:631-645. [PMID: 28488328 DOI: 10.1111/tpj.13592] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/28/2016] [Revised: 04/24/2017] [Accepted: 04/28/2017] [Indexed: 05/25/2023]
30
Holtz Y, Bonnefoy M, Viader V, Ardisson M, Rode NO, Poux G, Roumet P, Marie-Jeanne V, Ranwez V, Santoni S, Gouache D, David JL. Epistatic determinism of durum wheat resistance to the wheat spindle streak mosaic virus. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2017;130:1491-1505. [PMID: 28451771 PMCID: PMC5487696 DOI: 10.1007/s00122-017-2904-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2016] [Accepted: 03/27/2017] [Indexed: 05/29/2023]
31
Santoni S, Huneau F, Garel E, Aquilina L, Vergnaud-Ayraud V, Labasque T, Celle-Jeanton H. Strontium isotopes as tracers of water-rocks interactions, mixing processes and residence time indicator of groundwater within the granite-carbonate coastal aquifer of Bonifacio (Corsica, France). THE SCIENCE OF THE TOTAL ENVIRONMENT 2016;573:233-246. [PMID: 27565532 DOI: 10.1016/j.scitotenv.2016.08.087] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2016] [Revised: 08/12/2016] [Accepted: 08/13/2016] [Indexed: 06/06/2023]
32
Sarah G, Homa F, Pointet S, Contreras S, Sabot F, Nabholz B, Santoni S, Sauné L, Ardisson M, Chantret N, Sauvage C, Tregear J, Jourda C, Pot D, Vigouroux Y, Chair H, Scarcelli N, Billot C, Yahiaoui N, Bacilieri R, Khadari B, Boccara M, Barnaud A, Péros JP, Labouisse JP, Pham JL, David J, Glémin S, Ruiz M. A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives. Mol Ecol Resour 2016;17:565-580. [PMID: 27487989 DOI: 10.1111/1755-0998.12587] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2014] [Revised: 06/29/2016] [Accepted: 07/06/2016] [Indexed: 12/20/2022]
33
Bataillon T, Galtier N, Bernard A, Cryer N, Faivre N, Santoni S, Severac D, Mikkelsen TN, Larsen KS, Beier C, Sørensen JG, Holmstrup M, Ehlers BK. A replicated climate change field experiment reveals rapid evolutionary response in an ecologically important soil invertebrate. GLOBAL CHANGE BIOLOGY 2016;22:2370-2379. [PMID: 27109012 PMCID: PMC5021122 DOI: 10.1111/gcb.13293] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/30/2015] [Revised: 01/15/2016] [Accepted: 02/17/2016] [Indexed: 06/05/2023]
34
Zehdi-Azouzi S, Cherif E, Guenni K, Abdelkrim AB, Bermil A, Rhouma S, Salah MB, Santoni S, Pintaud JC, Aberlenc-Bertossi F, Hannachi AS. Endemic insular and coastal Tunisian date palm genetic diversity. Genetica 2016;144:181-90. [PMID: 26895027 DOI: 10.1007/s10709-016-9888-z] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2015] [Accepted: 02/14/2016] [Indexed: 11/30/2022]
35
Zehdi-Azouzi S, Cherif E, Moussouni S, Gros-Balthazard M, Abbas Naqvi S, Ludeña B, Castillo K, Chabrillange N, Bouguedoura N, Bennaceur M, Si-Dehbi F, Abdoulkader S, Daher A, Terral JF, Santoni S, Ballardini M, Mercuri A, Ben Salah M, Kadri K, Othmani A, Littardi C, Salhi-Hannachi A, Pintaud JC, Aberlenc-Bertoss F. Genetic structure of the date palm (Phoenix dactylifera) in the Old World reveals a strong differentiation between eastern and western populations. ANNALS OF BOTANY 2015;116:847. [PMID: 26378059 PMCID: PMC4590333 DOI: 10.1093/aob/mcv132] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
36
Zehdi-Azouzi S, Cherif E, Moussouni S, Gros-Balthazard M, Abbas Naqvi S, Ludeña B, Castillo K, Chabrillange N, Bouguedoura N, Bennaceur M, Si-Dehbi F, Abdoulkader S, Daher A, Terral JF, Santoni S, Ballardini M, Mercuri A, Ben Salah M, Kadri K, Othmani A, Littardi C, Salhi-Hannachi A, Pintaud JC, Aberlenc-Bertossi F. Genetic structure of the date palm (Phoenix dactylifera) in the Old World reveals a strong differentiation between eastern and western populations. ANNALS OF BOTANY 2015;116:101-12. [PMID: 26113618 PMCID: PMC4479755 DOI: 10.1093/aob/mcv068] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2015] [Revised: 03/02/2015] [Accepted: 04/13/2015] [Indexed: 05/28/2023]
37
Clermont D, Santoni S, Saker S, Gomard M, Gardais E, Bizet C. Assessment of DNA encapsulation, a new room-temperature DNA storage method. Biopreserv Biobank 2015;12:176-83. [PMID: 24955733 DOI: 10.1089/bio.2013.0082] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
38
Picq S, Santoni S, Lacombe T, Latreille M, Weber A, Ardisson M, Ivorra S, Maghradze D, Arroyo-Garcia R, Chatelet P, This P, Terral JF, Bacilieri R. A small XY chromosomal region explains sex determination in wild dioecious V. vinifera and the reversal to hermaphroditism in domesticated grapevines. BMC PLANT BIOLOGY 2014;14:229. [PMID: 25179565 PMCID: PMC4167142 DOI: 10.1186/s12870-014-0229-z] [Citation(s) in RCA: 56] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2014] [Accepted: 08/18/2014] [Indexed: 05/20/2023]
39
Mariac C, Scarcelli N, Pouzadou J, Barnaud A, Billot C, Faye A, Kougbeadjo A, Maillol V, Martin G, Sabot F, Santoni S, Vigouroux Y, Couvreur TLP. Cost-effective enrichment hybridization capture of chloroplast genomes at deep multiplexing levels for population genetics and phylogeography studies. Mol Ecol Resour 2014;14:1103-13. [DOI: 10.1111/1755-0998.12258] [Citation(s) in RCA: 95] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2013] [Revised: 03/07/2014] [Accepted: 03/17/2014] [Indexed: 11/30/2022]
40
Nabholz B, Sarah G, Sabot F, Ruiz M, Adam H, Nidelet S, Ghesquière A, Santoni S, David J, Glémin S. Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (Oryza glaberrima). Mol Ecol 2014;23:2210-27. [PMID: 24684265 DOI: 10.1111/mec.12738] [Citation(s) in RCA: 64] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2013] [Accepted: 03/19/2014] [Indexed: 12/17/2022]
41
Aberlenc-Bertossi F, Castillo K, Tranchant-Dubreuil C, Chérif E, Ballardini M, Abdoulkader S, Gros-Balthazard M, Chabrillange N, Santoni S, Mercuri A, Pintaud JC. In silico mining of microsatellites in coding sequences of the date palm (Arecaceae) genome, characterization, and transferability. APPLICATIONS IN PLANT SCIENCES 2014;2:apps1300058. [PMID: 25202594 PMCID: PMC4123382 DOI: 10.3732/apps.1300058] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2013] [Accepted: 09/24/2013] [Indexed: 05/09/2023]
42
Tonnabel J, Olivieri I, Mignot A, Rebelo A, Justy F, Santoni S, Caroli S, Sauné L, Bouchez O, Douzery EJP. Developing nuclear DNA phylogenetic markers in the angiosperm genus Leucadendron (Proteaceae): a next-generation sequencing transcriptomic approach. Mol Phylogenet Evol 2013;70:37-46. [PMID: 23948865 DOI: 10.1016/j.ympev.2013.07.027] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2012] [Revised: 07/12/2013] [Accepted: 07/29/2013] [Indexed: 01/30/2023]
43
Pintaud JC, Ludeña B, Aberlenc-Bertossi F, Zehdi S, Gros-Balthazard M, Ivorra S, Terral JF, Newton C, Tengberg M, Abdoulkader S, Daher A, Nabil M, Saro Hernández I, González-Pérez M, Sosa P, Santoni S, Moussouni S, Si-Dehbi F, Bouguedoura N. BIOGEOGRAPHY OF THE DATE PALM (PHOENIX DACTYLIFERA L., ARECACEAE): INSIGHTS ON THE ORIGIN AND ON THE STRUCTURE OF MODERN DIVERSITY. ACTA ACUST UNITED AC 2013. [DOI: 10.17660/actahortic.2013.994.1] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
44
Bobadilla Landey R, Cenci A, Georget F, Bertrand B, Camayo G, Dechamp E, Herrera JC, Santoni S, Lashermes P, Simpson J, Etienne H. High genetic and epigenetic stability in Coffea arabica plants derived from embryogenic suspensions and secondary embryogenesis as revealed by AFLP, MSAP and the phenotypic variation rate. PLoS One 2013;8:e56372. [PMID: 23418563 PMCID: PMC3572038 DOI: 10.1371/journal.pone.0056372] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2012] [Accepted: 01/08/2013] [Indexed: 01/30/2023]  Open
45
Besnard G, Khadari B, Navascués M, Fernández-Mazuecos M, El Bakkali A, Arrigo N, Baali-Cherif D, Brunini-Bronzini de Caraffa V, Santoni S, Vargas P, Savolainen V. The complex history of the olive tree: from Late Quaternary diversification of Mediterranean lineages to primary domestication in the northern Levant. Proc Biol Sci 2013;280:20122833. [PMID: 23390107 DOI: 10.1098/rspb.2012.2833] [Citation(s) in RCA: 86] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
46
Cherif E, Zehdi S, Castillo K, Chabrillange N, Abdoulkader S, Pintaud JC, Santoni S, Salhi-Hannachi A, Glémin S, Aberlenc-Bertossi F. Male-specific DNA markers provide genetic evidence of an XY chromosome system, a recombination arrest and allow the tracing of paternal lineages in date palm. THE NEW PHYTOLOGIST 2013;197:409-415. [PMID: 23231423 DOI: 10.1111/nph.12069] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2012] [Accepted: 10/23/2012] [Indexed: 05/26/2023]
47
Causse M, Santoni S, Damerval C, Maurice A, Charcosset A, Deatrick J, Vienne D. A composite map of expressed sequences in maize. Genome 2012;39:418-32. [PMID: 18469903 DOI: 10.1139/g96-053] [Citation(s) in RCA: 61] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
48
Bourguiba H, Audergon JM, Krichen L, Trifi-Farah N, Mamouni A, Trabelsi S, D’Onofrio C, Asma BM, Santoni S, Khadari B. Loss of genetic diversity as a signature of apricot domestication and diffusion into the Mediterranean Basin. BMC PLANT BIOLOGY 2012;12:49. [PMID: 22510209 PMCID: PMC3511222 DOI: 10.1186/1471-2229-12-49] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2011] [Accepted: 02/23/2012] [Indexed: 05/06/2023]
49
Rousset M, Bonnin I, Remoué C, Falque M, Rhoné B, Veyrieras JB, Madur D, Murigneux A, Balfourier F, Le Gouis J, Santoni S, Goldringer I. Deciphering the genetics of flowering time by an association study on candidate genes in bread wheat (Triticum aestivum L.). TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2011;123:907-26. [PMID: 21761163 DOI: 10.1007/s00122-011-1636-2] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2010] [Accepted: 06/13/2011] [Indexed: 05/18/2023]
50
Escobar JS, Scornavacca C, Cenci A, Guilhaumon C, Santoni S, Douzery EJP, Ranwez V, Glémin S, David J. Multigenic phylogeny and analysis of tree incongruences in Triticeae (Poaceae). BMC Evol Biol 2011;11:181. [PMID: 21702931 PMCID: PMC3142523 DOI: 10.1186/1471-2148-11-181] [Citation(s) in RCA: 66] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2011] [Accepted: 06/24/2011] [Indexed: 11/30/2022]  Open
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