A behaviorally-explicit approach for delivering vaccine baits to mesopredators to control epizootics in fragmented landscapes

Despite the widespread use of aerial baiting to manage epizootics among free-ranging populations, particularly in rabies management, bait acceptance and seroconversion rates often are lower than required to eliminate spread of disease. Our objectives in this study, therefore, were to evaluate the performance of stratified bait distribution models derived from resource selection functions (RSF) on uptake of placebo rabies baits by raccoons (Procyon lotor) and Virginia opossums (Didelphis virginiana), as well as the probability of bait uptake as a function of proximity to bait distribution areas in fragmented agricultural ecosystems. Among 478 raccoons and 108 opossums evaluated for presence of Rhodamine B (RB) across 8 sites, only 26% of raccoons and 20% of opossums exhibited marking consistent with bait consumption 14-24 days post-baiting. The effective area treated, based on 90% kernel density estimators of marked individuals, ranged from 99-240 ha larger than bait distribution zones, with RB marked individuals captured up to 753 m beyond the bait zone. Despite incorporation of RSF data into bait distribution models, no differences in uptake rates were observed between treatment and control sites. These data likely reflect the underlying constraints imposed by the loss and fragmentation of habitat on animal movement in heterogeneous landscapes, forcing individuals to optimize movements at coarse (i.e., patch-level) rather than fine spatial scales in highly fragmented environments. Our data also confirm that the probability of bait acceptance decreases with increasing distance from bait zone interiors, even within the zone itself. Thus, although bait acceptance was confirmed beyond bait zone boundaries, the proportion of vaccinated individuals may comprise a small minority of the population at increasing distances from baiting interiors. These data suggest focal baiting creates a buffered area of treated individuals around bait zones or bait stations, but repeated treatments may be needed to achieve sufficient uptake to eradicate disease.

Habitat selection by a generalist mesopredator near its historical range boundary

The Virginia opossum (Didelphis virginiana Kerr, 1792) has expanded its geographic range northward since European settlement, which has been attributed to its ability to exploit anthropogenic resources. To examine the utility of anthropogenic resources to this species, we monitored 61 opossums from 2009 to 2010 with very high frequency (VHF) telemetry in a fragmented agricultural ecosystem in northern Indiana, USA, at the periphery of the opossum’s historical distribution. We examined the influence of anthropogenic (agricultural areas, developed land, roads), disturbed (corridor, forest edge, grassland, water), and native (forest, shrub land) habitats on habitat selection at the second- and third-order scales across three seasons. At the second-order scale, areas proximate to agricultural fields and developed land were selected in the breeding and postbreeding seasons, respectively. Areas proximate to roads were selected at both spatial scales during all seasons except winter at the third-order scale. Areas near forest with high forest-edge density were selected throughout the year at both spatial scales, but confidence intervals for forest during the postbreeding season marginally overlapped zero (third-order scale). Although anthropogenic habitats provide novel resources for opossums, forest and forest edge remain essential components to populations near their historical distributional limit in agricultural ecosystems.

Baylisascaris procyonis infection in white-footed mice: predicting patterns of infection from landscape habitat attributes

There is a growing body of evidence that habitat fragmentation resulting from anthropogenic land use can alter the transmission dynamics of infectious disease. Baylisascaris procyonis , a parasitic roundworm with the ability to cause fatal central nervous system disease in many mammals, including humans, is a zoonotic threat, and research suggests that parasite recruitment rates by intermediate hosts are highly variable among forest patches in fragmented landscapes. During 2008, we sampled 353 white-footed mice ( Peromyscus leucopus ) from 22 forest patches distributed throughout a fragmented agricultural ecosystem to determine the influence of landscape-level habitat attributes on infection rates of B. procyonis in mice. We characterized each mouse in terms of infection status and intensity of infection, and calculated (on a patch-wide basis) prevalence, mean abundance of B. procyonis , and mean intensity of infection. We used an information-theoretic approach to develop a suite of candidate models characterizing the influence of landscape attributes on each of our measured characteristics of B. procyonis infection in white-footed mice, based on previous knowledge of raccoon ( Procyon lotor ) ecology and B. procyonis distribution in agricultural ecosystems. We observed evidence of B. procyonis infection in mice across all 22 habitat patches sampled. However, parasite recruitment rates and intensity were highly variable among patches, and the results of our analyses suggest that spatial variability in B. procyonis infections was primarily driven by emergent properties of fragmented ecosystems. In particular, prevalence, abundance, and intensity of B. procyonis infections in mice were negatively associated with the size and connectivity of forest patches. These results support previous studies indicating that habitat fragmentation can alter the transmission dynamics of infectious disease, and suggest that factors below the scale of landscape, i.e., fine-scale habitat structure or demographic and behavioral attributes of intermediate and/or definitive hosts, also may be important for predicting patterns of B. procyonis infection in intermediate hosts.

Effects of culling on mesopredator population dynamics

Anthropogenic changes in land use and the extirpation of apex predators have facilitated explosive growth of mesopredator populations. Consequently, many species have been subjected to extensive control throughout portions of their range due to their integral role as generalist predators and reservoirs of zoonotic disease. Yet, few studies have monitored the effects of landscape composition or configuration on the demographic or behavioral response of mesopredators to population manipulation. During 2007 we removed 382 raccoons (Procyon lotor) from 30 forest patches throughout a fragmented agricultural ecosystem to test hypotheses regarding the effects of habitat isolation on population recovery and role of range expansion and dispersal in patch colonization of mesopredators in heterogeneous landscapes. Patches were allowed to recolonize naturally and demographic restructuring of patches was monitored from 2008-2010 using mark-recapture. An additional 25 control patches were monitored as a baseline measure of demography. After 3 years only 40% of experimental patches had returned to pre-removal densities. This stagnant recovery was driven by low colonization rates of females, resulting in little to no within-patch recruitment. Colonizing raccoons were predominantly young males, suggesting that dispersal, rather than range expansion, was the primary mechanism driving population recovery. Contrary to our prediction, neither landscape connectivity nor measured local habitat attributes influenced colonization rates, likely due to the high dispersal capability of raccoons and limited role of range expansion in patch colonization. Although culling is commonly used to control local populations of many mesopredators, we demonstrate that such practices create severe disruptions in population demography that may be counterproductive to disease management in fragmented landscapes due to an influx of dispersing males into depopulated areas. However, given the slow repopulation rates observed in our study, localized depopulation may be effective at reducing negative ecological impacts of mesopredators in fragmented landscapes at limited spatial and temporal scales.

Habitats associated with vehicle collisions with wild pigs

Context Over the past few decades, the frequency of wild pig–vehicle collisions (WPVCs) and number of human fatalities associated with these accidents have increased with expanding populations of this species, particularly in regions outside its native distribution. Aims To better understand this widespread and growing human safety threat, we quantified habitat attributes associated with 311 WPVC locations occurring between 1983 and 2012 at the Savannah River Site (SRS) in South Carolina, USA, to test the hypothesis that WPVCs occur more frequently in areas proximal to preferred habitats (i.e. riparian and bottomland hardwood habitats). Methods At each collision site, we measured the distance to the nearest wetland and stream, as well as the composition of habitats within 100-m and 1699-m buffers. We then contrasted habitat attributes associated with collision sites with those from randomly selected locations along the same roads, to identify habitat characteristics contributing to a higher incidence of these accidents. Key results WPVCs were non-randomly distributed across both spatial scales measured, with collisions occurring more frequently in areas of preferred habitat for this species. Specifically, collisions occurred in areas closer to streams and containing less pine forest than at random locations at both spatial scales evaluated. Conclusions Similar to vehicle accidents with other ungulate species, our study suggested that vehicle collisions involving wild pigs are spatially clustered around preferred habitat types. Management efforts to reduce vehicle collisions with wild pigs should be focussed in areas where roadways bisect preferred habitats such as stream crossings and bottomland hardwood or other riparian habitats. Implications These data will aid in the development of mitigation strategies to reduce the frequency and impacts of WPVCs in areas of high wild-pig densities. However, given the paucity of data on WPVC mitigation, additional research is needed to quantify the efficacy of various methods (e.g. signage, fencing, underpasses) at reducing the frequency and severity of collisions with this species.

Genetic structure of a Virginia opossum (Didelphis virginiana) population inhabiting a fragmented agricultural ecosystem

Fragmentation has drastically altered the quality of habitats throughout numerous ecosystems, often leading to dramatic changes in the composition of wildlife communities. The ecology and associated movement behavior of a species may also be modified as a result of forest fragmentation, resulting in changes in genetic composition of the affected species. In this research, we evaluated the genetic structure of the Virginia opossum ( Didelphis virginiana Kerr, 1792) at the landscape and local scales in a fragmented, agricultural ecosystem in northern Indiana using 13 microsatellite loci. We examined 290 samples from opossums inhabiting 28 discrete habitat patches, and evaluated partitioning of genetic variation of opossums among and within habitat patches. We observed low but significant levels of genetic structure (FST = 0.005) overall, and pairwise comparisons of FST values among habitat patches also were relatively low. Relatedness within patches was highly variable (–0.077 ≤ rxy ≤ 0.060), with a few patches exhibiting significantly higher levels of relatedness than random expectations, and we detected no evidence of sex-biased natal dispersal. These results contrast with previous field studies that documented male-biased dispersal in the Virginia opossum, indicating dispersal in this species is plastic and dependent upon local environmental conditions.

Impacts of generalist mesopredators on the demography of small-mammal populations in fragmented landscapes

A consequence of the reduction and subsequent fragmentation of native habitats has been the loss or severe reduction of specialist predator populations from these altered ecosystems, resulting in a “release” of generalist predators. Demographic aspects of small-rodent populations, especially predator-driven density cycles, have been extensively studied. However, the majority of studies examining predator–prey dynamics have been conducted in relatively undisturbed ecosystems, while more limited data are available for regions that have been greatly modified by human settlement. Using raccoons ( Procyon lotor (L., 1758)) and white-footed mice ( Peromyscus leucopus (Rafinesque, 1818)) as focal species, we used an experimental framework to evaluate the hypothesis that generalist mesopredators limit small-mammal abundance in landscapes that have been significantly altered by human land use. Both parametric and nonparametric analyses indicated that populations of white-footed mice exhibited a significant increase (32%) in density where raccoon abundance was reduced when compared with control populations. Our study highlights an important role that superabundant mesopredators can play in ecosystems through the limitation of secondary prey populations. This research suggests that further investigation of the trophic dynamics of agricultural ecosystems is critical if we are to elucidate the fundamental ecological mechanisms associated with the persistence of species in disturbed environments.

Reducing Baylisascaris procyonis roundworm larvae in raccoon latrines

Baylisascaris procyonis roundworms, a parasite of raccoons, can infect humans, sometimes fatally. Parasite eggs can remain viable in raccoon latrines for years. To develop a management technique for parasite eggs, we tested anthelmintic baiting. The prevalence of eggs decreased at latrines, and larval infections decreased among intermediate hosts, indicating that baiting is effective.

Heterozygote deficiencies in parasite populations: an evaluation of interrelated hypotheses in the raccoon tick, Ixodes texanus

Population genetics is increasingly being used to study the biology of parasites at the scales of both the host (infrapopulation, IP) and host population (component population, CP). In this study we tested three mechanistic hypotheses that could explain deviations from Hardy-Weinberg equilibrium (HWE) expectations due to heterozygote deficits (HDs) at the CP scale in raccoon ticks (Ixodes texanus; n=718) collected from raccoons (Procyon lotor; n=91) and genotyped at 11 microsatellite loci. These hypotheses were presence of technical issues (for example, null alleles), hierarchical structure (for example, host demography) and cryptic structure (for example, kin structure). Although statistical support for null alleles existed, their presence would also be expected to lead to an underestimation in levels of relatedness, and thus kin structure. However, we found the opposite pattern: significant HD at the IP scale being more likely in CPs with significant vs non-significant levels of kin structure. Our analyses revealed that pooling of kin groups could lead to highly variable levels of F(IS) among loci, a pattern usually suggestive of null alleles. We used Monte-Carlo (MC) simulations to show that the existence of subdivided breeding groups and high variance in individual reproductive success could adequately explain deviations from HWE in I. texanus. Thus, our results indicate that biological factors can lead to patterns that have usually been interpreted as technical issues (for example, null alleles), and that it is important to take such factors into consideration because loci deviating from HWE likely reflect the effects of real biological processes.

Spatial and temporal factors affecting parasite genotypes encountered by hosts: empirical data from American dog ticks (Dermacentor variabilis) parasitising raccoons (Procyon lotor)

The American dog tick (Dermacentor variabilis) is an important vector of numerous pathogens of humans and animals. In this study, we analysed population genetic patterns in D. variabilis at scales of the host individual (infrapopulation) and population (component population) to elucidate fine-scale spatial and temporal factors influencing transmission dynamics. We genotyped D. variabilis collected from raccoons (Procyon lotor) trapped in two habitat patches (located in Indiana, USA) which were spatially proximate (5.9 km) and limited in size (10.48 Ha and 25.47 Ha, respectively). Despite the fine spatial sampling scale, our analyses revealed significant genetic differentiation amongst component populations and infrapopulations (within each component population), indicating a non-random pattern of encountering tick genotypes by raccoons at both scales evaluated. We found evidence for male-biased dispersal in the ticks themselves (in one component population) and an age-bias in spatial scales at which raccoons encountered ticks in the environment. At the scale of the component population, our analyses revealed that raccoons encountered ticks from a limited number of D. variabilis family groups, likely due to high reproductive variance amongst individual ticks. Finally, we found evidence for a temporal effect with raccoons encountering ticks in the environment as "clumps" of related individuals. While the genetic structure of parasite populations are increasingly being investigated at small spatial scales (e.g. the infrapopulation), our data reveal that genetic structuring can originate at scales below that of the infrapopulation, due to the interaction between temporal and biological factors affecting the encounter of parasites by individual hosts. Ultimately, our data indicate that genetic structure in parasites must be viewed as a consequence of both spatial and temporal variance in host-parasite interactions, which in turn are driven by demographic factors related to both the host and parasite.

A genetic analysis of the Virginia opossum mating system: evidence of multiple paternity in a highly fragmented landscape

Using molecular techniques, we examined patterns of paternity in Virginia opossums occupying a highly fragmented agricultural landscape in northern Indiana. During 2008, we collected tissue from 64 females and their pouch young in 34 forest patches distributed over a 1100-km(2) region. Using genotypes from 10 microsatellite loci, we determined the minimum number of fathers contributing to each litter using GERUD 1.0. Genotyped offspring with known mothers were then analyzed using CERVUS 3.0, incorporating genotypes from 317 males sampled from 2007-2008 to identify potential fathers. Our analyses revealed that promiscuity was common among females, with 26 (41%) litters having > or = 2 sires. Despite the fact that we intensively sampled forest patches for potential fathers, we only were able to identify 13 fathers contributing to 14 litters, with an average Euclidean distance of 18.7 km between father-offspring pairs found in disparate patches (N = 6). Our inability to identify most (85%) fathers of sampled litters, coupled with the extensive distances observed between putative father-offspring pairs, suggests that opossums may not maintain explicit home ranges in highly fragmented landscapes.

Population genetic structure of raccoons (Procyon lotor) inhabiting a highly fragmented landscape

The raccoon ( Procyon lotor (L., 1758)), a generalist mesocarnivore, has thrived in anthropogenically fragmented landscapes. In this study we utilized 13 microsatellites to analyze the population genetic structure in raccoons occupying an agriculturally fragmented habitat. Our analyses revealed low, but significant, levels of genetic structure (FST = 0.022, P < 0.001) among 645 raccoons inhabiting 29 spatially distinct habitat patches (neighborhoods). We found no evidence for the presence of either isolation by distance or barriers. However, spatial autocorrelation revealed evidence for social structure at the raccoon-neighborhood scale. About 30% of the variance in levels of social structure among raccoon neighborhoods was explained by effects of habitat-patch size and the percentage of land cover represented by forest around the individual habitat patch. We found strong evidence of sex-biased dispersal using direct (parentage analysis) and indirect (relatedness and assignment indices) genetic estimators. However, our analysis revealed that among dispersing raccoons there was no difference in dispersal distance between sexes and that dispersal events are randomly distributed with respect to distance. Our study provides evidence that demographic and behavioral processes affecting raccoon spatial organization may be most critical at very fine scales of biological organization, such as within individual habitat patches.