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Zhou Q, Shi F, Zhao HY, Li Y, Song QK. [Clinicopathologic characteristics of pseudomyxoma peritonei]. ZHONGHUA BING LI XUE ZA ZHI = CHINESE JOURNAL OF PATHOLOGY 2018. [PMID: 29534359 DOI: 10.3760/cma.j.issn.0529-5807.2018.03.009] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
Objective: To analyze the relationship between clinicopathologic characteristics of pseudomyxoma peritonei (PMP) and its prognosis. Methods: Fifty-two cases of PMP collected from 2012 to 2017 at Beijing Shijitan Hospital, Capital Medical University were reviewed using the diagnostic criteria of WHO 2010. The histopathologic features, including original location, neural invasion and calcification were observed; and the relationship with prognosis was analyzed. Immunohistochemical staining for CK7, CK20 and CDX2 was performed on all cases. ER, PR, and p16 were additionally performed on those without clear origin. Results: Patients' mean age was 52.0 years, and included 29 males and 23 females. Thirty-two cases were derived from appendix; among them, 23 were low grade and 29 were high grade. Signet ring-cells, neural invasion and calcification were detected in 15, 12 and 9 cases respectively. Neural invasion was associated with adverse prognosis (P=0.025) and signet ring cell morphology (P<0.01). Prognosis was not related to gender, age, original location or grade. Conclusion: Neural invasion is not uncommon in PMP and predicts a bad prognosis.
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Sun Q, Chen Z, Han R, Nie Y, Zhang S, Luo F, Shi F, Tian G, Lin W, Ren P, Song L, Ruan X, Ren J. Experiment on uranium slabs of different thicknesses with D-T neutrons and validation of evaluated nuclear data. FUSION ENGINEERING AND DESIGN 2017. [DOI: 10.1016/j.fusengdes.2017.10.021] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Zeng Q, Jiang B, Shi F, Ling C, Dong F, Zhang J. 3D Pseudocontinuous Arterial Spin-Labeling MR Imaging in the Preoperative Evaluation of Gliomas. AJNR Am J Neuroradiol 2017; 38:1876-1883. [PMID: 28729293 PMCID: PMC7963629 DOI: 10.3174/ajnr.a5299] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2017] [Accepted: 05/22/2017] [Indexed: 01/19/2023]
Abstract
BACKGROUND AND PURPOSE Previous studies showed conflicting results concerning the value of CBF maps obtained from arterial spin-labeling MR imaging in grading gliomas. This study was performed to investigate the effectiveness of CBF maps derived from 3D pseudocontinuous arterial spin-labeling in preoperatively assessing the grade, cellular proliferation, and prognosis of gliomas. MATERIALS AND METHODS Fifty-eight patients with pathologically confirmed gliomas underwent preoperative 3D pseudocontinuous arterial spin-labeling. The receiver operating characteristic curves for parameters to distinguish high-grade gliomas from low-grade gliomas were generated. Pearson correlation analysis was used to assess the correlation among parameters. Survival analysis was conducted with Cox regression. RESULTS Both maximum CBF and maximum relative CBF were significantly higher in high-grade gliomas than in low-grade gliomas (P < .001). The areas under the curve for maximum CBF and maximum relative CBF in distinguishing high-grade gliomas from low-grade gliomas were 0.828 and 0.863, respectively. Both maximum CBF and maximum relative CBF had no correlation with the Ki-67 index in all subjects and had a moderate negative correlation with the Ki-67 index in glioblastomas (r = -0.475, -0.534, respectively). After adjustment for age, a higher maximum CBF (P = .008) and higher maximum relative CBF (P = .005) were associated with worse progression-free survival in gliomas, while a higher maximum relative CBF (P = .033) was associated with better overall survival in glioblastomas. CONCLUSIONS 3D pseudocontinuous arterial spin-labeling-derived CBF maps are effective in preoperative evaluation of gliomas. Although gliomas with a higher blood flow are more malignant, glioblastomas with a lower blood flow are likely to be more aggressive.
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Shi F, Lyu SP, Kong FL, Yang XT, Zhou JY. [Analysis on the exposure level and geographic distribution trend of toxicological indicators in rural drinking water, Shandong Province, in 2015]. ZHONGHUA YU FANG YI XUE ZA ZHI [CHINESE JOURNAL OF PREVENTIVE MEDICINE] 2017; 51:843-847. [PMID: 28881552 DOI: 10.3760/cma.j.issn.0253-9624.2017.09.013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Objective: To analyze the exposure level and the geographical distribution trend of toxicological indicators of rural drinking water in Shandong Province. Methods: The drawing method was used to randomly select no less than 60% villages and towns from 137 counties (cities, districts) of 17 cities in Shandong Province in 2015, and then 1-3 rural centralized water supply units were selected according to the circumstance of rural centralized water supply units in each village and town. In total, 735 villages and towns, 1 473 rural centralized water supply units were selected, and 1 473 water samples were collected. The water treatment process, water supply population and other circumstances of the rural centralized water supply units were investigated, the water quality was monitored, the content of toxicological indicators of drinking water in different areas was compared, and the trend surface isogram of excessive toxicological indicators was drawn. Results: The qualified rate of toxicological indicators in 1 473 water samples was 83.64% (n=1 232). The main toxicological indicators that affected the qualified rate of toxicological indicators of drinking water in rural areas in Shandong Province were nitrate and fluoride. The excessive rate of fluoride was 5.70% (n=84) and the exposed population was 1 736 709 (4.22%). The excessive rate of nitrate (as nitrogen) was 12.29% (n=181) and the exposed population was 1 393 612 (3.39%). The P(5)0 content of fluoride in the eastern, middle and western regions was 0.24, 0.29 and 0.59 mg/L, respective;which was higher in the western region than in the east and the middle regions (P<0.05). There was no significant difference between the eastern and the middle regions (P>0.05). The P(50) content of nitrate (as nitrogen) in the eastern, middle and western regions was 8.00, 7.48, and 2.00 mg/L, which was higher in the eastern and middle regions than in the west region (P<0.05), there was no significant difference between the eastern and the middle regions (P>0.05). The trend surface isogram of nitrate and fluoride content showed that the content of nitrate (as nitrogen) in rural drinking water in the eastern region was significantly higher than that in the western region, especially there was a high peak area in the northeastern region, and this high content distribution extended diagonally to the central region, while the other regions were in a relatively low range. The content of fluoride in rural drinking water in the western region was significantly higher than that in the eastern region, and there were high peaks in the southwest and northwest regions, and the other regions were in a relatively low range. Conclusion: The high exposed toxicological indicators in rural drinking water in Shandong Province were nitrate (as nitrogen) and fluoride, and their distribution showed obvious geographical distribution trend.
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Luo F, Han R, Nie Y, Chen Z, Zhang S, Shi F, Lin W, Ren P, Tian G, Sun Q, Gou B, Ruan X, Ren J, Ye M. Measurement of leakage neutron spectra from silicon carbide cylinders with D–T neutrons and validation of evaluated nuclear data. FUSION ENGINEERING AND DESIGN 2016. [DOI: 10.1016/j.fusengdes.2016.06.063] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Jiang M, Yun Q, Niu G, Gao Y, Shi F, Yu S. Puerarin prevents inflammation and apoptosis in the neurocytes of a murine Parkinson's disease model. GENETICS AND MOLECULAR RESEARCH 2016; 15:gmr7501. [PMID: 27808353 DOI: 10.4238/gmr.15047501] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
The aim of this study was to investigate Parkinson's disease (PD) using a murine model of PD. Specifically, we aimed to explore the mechanism by which puerarin prevents inflammation and apoptosis in neurocytes. Eighty healthy male C57/BL6 mice were randomly selected and divided into four groups (N = 20 each): control group; PD group; PD+puerarin group; and puerarin group. At the end of the treatment period, the animals' brains were removed after perfusion and decollation. The protein expression levels of tyrosine hydroxylase (TH) in the murine brains were assessed by immunohistochemistry and the protein expression levels of TH, glial fibrillary acidic protein (GFAP), inducible nitric oxide synthase (iNOS), cleaved Caspase-3, and Bax in the substantia nigra and corpus striatum of the animals were assessed by western blotting. The spontaneous activity of the PD mice was found to be significantly higher after puerarin treatment and the distance traveled by mice in an open field assessment was 1700 cm further in puerarin-treated PD mice than in PD mice. Immunohistochemistry and western blotting analyses indicated that the expression of TH was significantly higher (2.63-fold) in puerarin-treated PD mice than in untreated PD mice and that the expression of GFAP in PD mice was significantly reduced (~45%) by puerarin treatment. These findings lead us to conclude that puerarin significantly alleviates 1-methyl-4-phenyl- 1,2,3,6-tetrahydropyridine-induced injury in dopaminergic neurons. Puerarin mediates anti-apoptotic and anti-inflammatory activities and plays a neuroprotective role.
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Liu X, Shi F, Li Y, Yu X, Peng S, Li W, Luo X, Cao Y. Post-translational modifications as key regulators of TNF-induced necroptosis. Cell Death Dis 2016; 7:e2293. [PMID: 27383048 PMCID: PMC4973344 DOI: 10.1038/cddis.2016.197] [Citation(s) in RCA: 43] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2016] [Revised: 05/20/2016] [Accepted: 06/07/2016] [Indexed: 12/17/2022]
Abstract
Necroptosis is a novel form of programmed cell death that is independent of caspase activity. Different stimuli can trigger necroptosis. At present, the most informative studies about necroptosis derive from the tumor necrosis factor (TNF)-triggered system. The initiation of TNF-induced necroptosis requires the kinase activity of receptor-interacting protein 1 and 3 (RIP1 and RIP3). Evidence now reveals that the ability of RIP1 and RIP3 to modulate this key cellular event is tightly controlled by post-translational modifications, including ubiquitination, phosphorylation, caspase 8-mediated cleavage and GlcNAcylation. These regulatory events coordinately determine whether a cell will survive or die by apoptosis or necroptosis. In this review, we highlight recent advances in the study of post-translational modifications during TNF-induced necroptosis and discuss how these modifications regulate the complex and delicate control of programmed necrosis.
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Tian Z, Shi F, Gu X, Graves Y, Tan J, Hassan-Rezaeian N, Jiang S, Jia X. MO-FG-202-08: Real-Time Monte Carlo-Based Treatment Dose Reconstruction and Monitoring for Radiotherapy. Med Phys 2016. [DOI: 10.1118/1.4957311] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Zhao HB, Zhang XF, Shi F, Zhang MZ, Xue WL. Comparison of the expression of human equilibrative nucleotide transporter 1 (hENT1) and ribonucleotide reductase subunit M1 (RRM1) genes in seven non-Hodgkin lymphoma cell lines. GENETICS AND MOLECULAR RESEARCH 2016; 15:gmr8275. [PMID: 27173327 DOI: 10.4238/gmr.15028275] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
We investigated the variability in the expression of human equilibrative nucleoside transporter 1 (hENT1) and ribonucleotide reductase subunit M1 (RRM1) in non-Hodgkin lymphoma cell lines. hENT1 and RRM1 mRNA expression levels in natural killer (NK) cells and seven non-Hodgkin lymphoma cell lines (YTS, SNK-6, Jeko-1, ly-1, Raji, Karpas, and Jurket) were studied using reverse-transcription quantitative real-time polymerase chain reaction (RT-qPCR) and the results were compared using the Student t-test. mRNA expression of hENT1 was detectable in YTS, SNK-6, Jeko-1, ly-1, Raji, Karpas, Jurket, and NK cells, which revealed variability in gene expression. There were significant differences in the mRNA expression values of hENT1 (P = 0.021) and RRM1 (P = 0.002) compared to those in NK cells. mRNA expression of both hENT1 and RRM1 was closely associated with non-Hodgkin lymphoma cell proliferation. Differential expression analysis of hENT1 and RRM1 in non-Hodgkin lymphoma cell lines may provide novel drug leads for precision medicine.
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Li M, Zhao F, Zhang X, Shi F, Zhu H, Han A, Zhang Y, Kong L, Yu J. Involved-field irradiation in definitive chemoradiotherapy for T4 squamous cell carcinoma of the esophagus. ACTA ACUST UNITED AC 2016; 23:e131-7. [PMID: 27122981 DOI: 10.3747/co.23.2846] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
OBJECTIVES Definitive concurrent chemoradiotherapy (ccrt) is currently a therapeutic option for locally advanced esophageal cancer. However, clinical practice differs with respect to the target volume for irradiation. The purpose of the present study was to analyze failure patterns and survival, and to determine the feasibility of using involved-field irradiation (ifi) with concurrent chemotherapy for T4 squamous cell carcinoma (scc) of the esophagus. METHODS Between January 2003 and January 2013, 56 patients with clinical T4M0 scc of the esophagus received ccrt using ifi. The radiation field included the primary tumour and clinically involved lymph nodes. Target volumes and sites of failure were analyzed, as were treatment-related toxicity and survival time. RESULTS In this 56-patient cohort, 13 patients (23.2%) achieved a complete response, and 21 (37.5%) achieved a partial response, for a total response rate of 60.7%. The major toxicities experienced were leucocytopenia and esophagitis, with 14 patients (25.0%) experiencing grade 3 toxicities. At a median follow-up of 34 months, 48 patients (85.7%) had experienced failure: 39 (69.6%) in-field, 7 (12.5%) elective nodal, and 19 (33.9%) distant. Only 1 patient (1.8%) experienced isolated elective nodal failure. The 1-, 2-, and 3-year survival rates were 39.3%, 21.4%, and 12.5% respectively. CONCLUSIONS For patients with T4M0 scc of the esophagus, definitive ccrt using ifi resulted in an acceptable rate of isolated elective nodal failure and an overall survival comparable to that achieved with elective nodal irradiation. A limited radiation therapy target volume, including only clinically involved lesions, would therefore be a feasible choice for this patient subgroup.
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Zhao GF, Hu YH, Liu RL, Shi F, Li HP, Wang DH, Wang BC. [Clinical significance of the preoperative neutrophil lymphocyte ratio in the evaluation of the prognosis of laryngeal carcinoma]. ZHONGHUA ER BI YAN HOU TOU JING WAI KE ZA ZHI = CHINESE JOURNAL OF OTORHINOLARYNGOLOGY HEAD AND NECK SURGERY 2016; 51:112-6. [PMID: 26898867 DOI: 10.3760/cma.j.issn.1673-0860.2016.02.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
OBJECTIVE To explore the effect of preoperative neutrophil lymphocyte ratio (NLR) on the prognosis of patients with laryngeal carcinoma. METHODS Clinical data of 202 patients with laryngeal carcinoma treated from January 2004 to October 2009 were retrospective analyzed to determine the optimal critical value of NLR. To study whether NLR is an independent factor affecting the recurrence and 5-year survival rate of patients with laryngeal cancer after surgery, single factor and multivariate analyses were performed. The factors included age, gender, T stage, pathological differentiation, lymph node metastasis, primary tumor site and NLR value. The relationship between NLR and cervical lymph node metastasis was analyzed. RESULTS The optimal critical value of NLR was 2.85, by which cases were divided into high NLR group (NLR≥2.85) and low NLR group (NLR<2.85). Single factor and multivariate analyses indicated that T staging, lymph node metastasis, primary tumor location, and NLR were the independent factors affecting the recurrence of laryngeal carcinoma. T stage and lymph node metastasis were the independent factors affecting 5-year survival rate of laryngeal carcinoma. The increase of NLR value increased the rate of cervical lymph node metastasis. CONCLUSION Preoperative NLR level influences the recurrence and cervical lymph node metastasis of laryngeal carcinoma and can be considered a prognosis factor of laryngeal cancer.
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Zhou D, Xie D, Shi F, Wang D, Ge X, Xia X, Wang X, Gu C, Tu J. Crystalline/amorphous tungsten oxide core/shell hierarchical structures and their synergistic effect for optical modulation. J Colloid Interface Sci 2015; 460:200-8. [PMID: 26321573 DOI: 10.1016/j.jcis.2015.08.042] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2015] [Revised: 08/16/2015] [Accepted: 08/20/2015] [Indexed: 10/23/2022]
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Zhao X, Shi F, Zhan W. Overexpression of ZWF1 and POS5 improves carotenoid biosynthesis in recombinant Saccharomyces cerevisiae. Lett Appl Microbiol 2015; 61:354-60. [PMID: 26179622 DOI: 10.1111/lam.12463] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2015] [Revised: 06/15/2015] [Accepted: 06/24/2015] [Indexed: 11/28/2022]
Abstract
UNLABELLED Recombinant Saccharomyces cerevisiae expressing exogenous carotenogenic genes can synthesize carotenoids. NADPH is a key cofactor for carotenoid biosynthesis, while glucose-6-phosphate dehydrogenase (Zwf1) and an NADH kinase (Pos5) are the two main NADPH-supplying sources in S. cerevisiae. Here, the effect of ZWF1 and POS5 overexpression on carotenoid yield in recombinant S. cerevisiae was explored. The initial carotenogenic strain Sc-EYBIH+I which expressed crtE, crtYB, crtI, cHMG1 and another copy of crtI could synthesize 1·35 ± 0·13 mg l(-1) of lycopene and 0·32 ± 0·02 mg l(-1) of β-carotene. When ZWF1 was overexpressed (Sc-EYBIZH+I), glucose-6-phosphate dehydrogenase activity increased by 103-fold, the transcription level of crtE and crtI increased significantly, the lycopene and β-carotene yield increased to 2·29 ± 0·06 and 0·38 ± 0·02 mg l(-1) respectively. When POS5 was overexpressed (Sc-EYBIPH+I), NAD kinase activity increased by 5·5-fold, the transcription level of crtE, crtYB and crtI increased obviously, the lycopene and β-carotene yield increased to 2·50 ± 0·11 and 0·53 ± 0·03 mg l(-1) respectively. Therefore, improvement of NADPH supply contributed to carotenoids biosynthesis in S. cerevisiae and overexpression of POS5 was more effective than overexpression of ZWF1. This study provides a new strategy for enhancing carotenoid biosynthesis. SIGNIFICANCE AND IMPACT OF THE STUDY NADPH is a key cofactor for carotenoid biosynthesis. Glucose-6-phosphate dehydrogenase (Zwf1) and an NADH kinase (Pos5) are effective NADPH-supplying sources in Saccharomyces cerevisiae. When ZWF1 and POS5 were overexpressed in a carotenoid-producing S. cerevisiae strain individually, the total yield of lycopene and β-carotene increased by 59·9% and 81·4%, respectively, and the final product β-carotene yield increased by 18·8% and 65·6% respectively. This suggests the improvement of NADPH supply as a useful strategy for carotenoids biosynthesis.
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Shi F, Choi W, Lowe MJS, Skelton EA, Craster RV. The validity of Kirchhoff theory for scattering of elastic waves from rough surfaces. Proc Math Phys Eng Sci 2015. [DOI: 10.1098/rspa.2014.0977] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
The Kirchhoff approximation (KA) for elastic wave scattering from two-dimensional (2D) and three-dimensional (3D) rough surfaces is critically examined using finite-element (FE) simulations capable of extracting highly accurate data while retaining a fine-scale rough surface. The FE approach efficiently couples a time domain FE solver with a boundary integration method to compute the scattered signals from specific realizations of rough surfaces. Multiple random rough surfaces whose profiles have Gaussian statistics are studied by both Kirchhoff and FE models and the results are compared; Monte Carlo simulations are used to assess the comparison statistically. The comparison focuses on the averaged peak amplitude of the scattered signals, as it is an important characteristic measured in experiments. Comparisons, in both two dimensions and three dimensions, determine the accuracy of Kirchhoff theory in terms of an empirically estimated parameter
σ
2
/λ
0
(
σ
is the RMS value, and λ
0
is the correlation length, of the roughness), being considered accurate when this is less than some upper bound
c
, (
σ
2
/λ
0
<
c
). The incidence and scattering angles also play important roles in the validity of the Kirchhoff theory and it is found that for modest incidence angles of less than 30°, the accuracy of the KA is improved even when
σ
2
/λ
0
>
c
. In addition, the evaluation results are compared using 3D isotropic rough surfaces and 2D surfaces with the same surface parameters.
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Bartoli B, Bernardini P, Bi XJ, Branchini P, Budano A, Camarri P, Cao Z, Cardarelli R, Catalanotti S, Chen SZ, Chen TL, Creti P, Cui SW, Dai BZ, D’Amone A, Danzengluobu, De Mitri I, D’Ettorre Piazzoli B, Girolamo TD, Sciascio GD, Feng CF, Feng Z, Feng Z, Gou QB, Guo YQ, He HH, Hu H, Hu H, Iacovacci M, Iuppa R, Jia HY, Labaciren, Li HJ, Liguori G, Liu C, Liu J, Liu MY, Lu H, Ma LL, Ma XH, Mancarella G, Mari SM, Marsella G, Martello D, Mastroianni S, Montini P, Ning CC, Panareo M, Perrone L, Pistilli P, Ruggieri F, Salvini P, Santonico R, Shen PR, Sheng XD, Shi F, Surdo A, Tan YH, Vallania P, Vernetto S, Vigorito C, Wang H, Wu CY, Wu HR, Xue L, Yang QY, Yang XC, Yao ZG, Yuan AF, Zha M, Zhang HM, Zhang L, Zhang XY, Zhang Y, Zhao J, Zhaxiciren, Zhaxisangzhu, Zhou XX, Zhu FR, Zhu QQ, Zizzi G. STUDY OF THE DIFFUSE GAMMA-RAY EMISSION FROM THE GALACTIC PLANE WITH ARGO-YBJ. ACTA ACUST UNITED AC 2015. [DOI: 10.1088/0004-637x/806/1/20] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Tian Z, Shi F, Folkerts M, Qin N, Jiang S, Jia X. SU-E-T-112: An OpenCL-Based Cross-Platform Monte Carlo Dose Engine (oclMC) for Coupled Photon-Electron Transport. Med Phys 2015. [DOI: 10.1118/1.4924473] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Tian Z, Folkerts M, Li Y, Shi F, Jiang S, Jia X. TH-EF-BRD-02: An Analytic Linear Accelerator Source Model and Automatic Source Commissioning for GPU-Based Fast Monte Carlo Dose Calculation. Med Phys 2015. [DOI: 10.1118/1.4926289] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Tan J, Shi F, Hrycushko B, Medin P, Stojadinovic S, Pompos A, Yang M, Albuquerque K, Jia X. TU-AB-201-02: An Automated Treatment Plan Quality Assurance Program for Tandem and Ovoid High Dose-Rate Brachytherapy. Med Phys 2015. [DOI: 10.1118/1.4925540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Tian ZH, Shi F, Zhong FG, Bai DP, Zhang XY. Analysis of Fcgrt gene polymorphism in indigenous Chinese sheep and its association with colostrum IgG concentration. GENETICS AND MOLECULAR RESEARCH 2015; 14:2461-70. [PMID: 25867392 DOI: 10.4238/2015.march.30.4] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
The neonatal Fc receptor (FcRn) plays an important role in regulating IgG homeostasis in the body and passive protection to the offspring. Changes in FcRn expression levels caused by genetic polymorphisms of Fcgrt, which encodes FcRn, may lead to inter-individual differences in colostrum IgG levels in sheep. In this study, we sequenced the FcRn partial heavy chain from 179 sheep from Xinjiang Province, China, and detected the differences in colostrum IgG levels and Fcgrt genotypes to identify the correlation between the Fcgrt genotype and colostrum IgG levels in 4 sheep breeds. The DNA sequencing of a 680-bp fragment of the Fcgrt gene revealed various patterns depending on the single-strand conformation in the Suffolk breed. Sequencing analysis revealed a total of 3 patterns, AA, BB, AB, in this fragment, among which the absence of AB and BB genotype acted as a marker for breed identification and characterization, while the AA genotype was shared by Suffolk and 3 other breeds. The only allele found in all 4 breeds was allele A, indicating that natural selection may be favoring the AB and BB genotypes in general and B allele in particular, as the colostrum IgG concentration was relatively higher in the Suffolk breed compared to the other 3 breeds.
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Shi F, Zhang Q, Wang P, Sun H, Wang J, Rong X, Chen M, Ju C, Reinhard F, Chen H, Wrachtrup J, Wang J, Du J. Single-protein spin resonance spectroscopy under ambient conditions. Science 2015; 347:1135-8. [DOI: 10.1126/science.aaa2253] [Citation(s) in RCA: 217] [Impact Index Per Article: 24.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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Zhang S, Chen Z, Nie Y, Wada R, Ruan X, Han R, Liu X, Lin W, Liu J, Shi F, Ren P, Tian G, Luo F, Ren J, Bao J. Measurement of leakage neutron spectra for Tungsten with D-T neutrons and validation of evaluated nuclear data. FUSION ENGINEERING AND DESIGN 2015. [DOI: 10.1016/j.fusengdes.2015.01.010] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Shi F, Hsiang T. First Report of Pseudonectria buxi Causing Volutella Blight on Boxwood (Buxus sp.) in Beijing, China. PLANT DISEASE 2014; 98:1282. [PMID: 30699632 DOI: 10.1094/pdis-04-14-0434-pdn] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Pseudonectria buxi (also called Volutella buxi) is a fungal pathogen that causes a disease of boxwood (Buxus spp.). This disease has been reported in several countries in Europe and North America, and has been traditionally considered the primary cause of boxwood decline (1), although box blight caused by Cylindrocladium buxicola has claimed notoriety because of its recent introduction to North America. In August 2013, symptoms resembling Volutella blight were observed at a park in Haidian District, Beijing, China, on leaves and stems of Korean boxwood (B. sinica var. insularis). The plants were still alive, but diseased leaves and twigs were yellowed and showed dieback. Symptoms were common on boxwood throughout this park, and the disease was also seen in other nearby areas. Pink sporodochia were observed on some yellowed leaves and stems. Diseased tissues (stems and leaves) were collected, cut into 1 mm2 pieces, surface sterilized in 1% sodium hypochlorite for 1 min, and placed on potato dextrose agar. After 3 days of incubation at room temperature, white fluffy mycelia were seen. The middle of the colonies turned pink by 7 days, and conidia produced on verticillately branched conidiophores in these pink areas were elliptical, 6 to 9 × 2 to 2.5 μm. DNA was extracted from one colony containing spores and mycelium, and a portion of the beta-tubulin gene was amplified using primers designed from highly conserved regions (5'-AACAACTGGGCCAAGGGTC, 5'-GAAGAGTTCTTGTTCTGGA) (3). The 676-bp amplicon was sequenced (GenBank Accession No. KJ755987), and the top matches were two isolates of P. buxi (KC819609 and DQ522522) with identities of 566/567 bp (99.8%) and 551/567 bp (97.2%), respectively. The next best matches were at 92% for Fusarium spp. For inoculation, four pots of 2-year-old healthy B. sinica var. insularis × B. sempervirens cv. Green Velvet were used. As wounds are required for the infection process (2,3), two parallel light scratches were made using needles on adaxial surface of three leaves per plant. One plant was only sprayed with water until runoff, while the other three plants were sprayed with a spore suspension (106 spores/ml) of P. buxi until runoff, covered with plastic bags, and placed at 25°C. After 3 days, pink sporodochia were observed on inoculated wounded leaves, but not on non-wounded leaves. By 10 days, inoculated wounded leaves turned yellow and became covered with sporodochia all over the adaxial surface, and on wound sites on the adaxial surfaces. No signs or symptoms were observed on either non-wounded inoculated leaves or on plants sprayed only with water. P. buxi was re-isolated from the diseased leaves but not the water-treated leaves, to successfully complete Koch's postulates. To the best of our knowledge, this is the first report of P. buxi causing Volutella blight on boxwood in China. References: (1) J. L. Bezerra. Acta Botanica Neerlandica 12:58, 1963. (2) B. Henricot et al. Plant Pathol. 49:805, 2000. (3) F. Shi and T. Hsiang. Eur. J. Plant Pathol. 138:763, 2014.
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Bartoli B, Bernardini P, Bi X, Bolognino I, Branchini P, Budano A, Camarri P, Cao Z, Cardarelli R, Catalanotti S, Cattaneo C, Chen S, Chen T, Creti P, Cui S, Dai B, D'Amone A, Danzengluobu, De Mitri I, D'Ettorre Piazzoli B, Di Girolamo T, Di Sciascio G, Feng C, Zhaoyang Feng, Zhenyong Feng, Giroletti E, Gou Q, Guo Y, He H, Haibing Hu, Hongbo Hu, Iacovacci M, Iuppa R, Jia H, Labaciren, Li H, Liguori G, Liu C, Liu J, Liu M, Lu H, Ma L, Ma X, Mancarella G, Mari S, Marsella G, Martello D, Mastroianni S, Montini P, Ning C, Panareo M, Perrone L, Pistilli P, Ruggieri F, Salvini P, Santonico R, Shen P, Sheng X, Shi F, Surdo A, Tan Y, Vallania P, Vernetto S, Vigorito C, Wang H, Wu C, Wu H, Xue L, Yang Q, Yang X, Yao Z, Yuan A, Zha M, Zhang H, Zhang L, Zhang X, Zhang Y, Zhao J, Zhaxiciren, Zhaxisangzhu, Zhou X, Zhu F, Zhu Q, Zizzi G. Radon contribution to single particle counts of the ARGO-YBJ detector. RADIAT MEAS 2014. [DOI: 10.1016/j.radmeas.2014.07.006] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Li M, Zhang X, Liao Z, Meng X, Kong L, Zhang X, Shi F, Zhang Y, Wei G, Man H, Zhang G, Yu J. Failure Patterns after Definitive Chemoradiation Therapy with Involved-Field Irradiation for Locally Advanced Esophageal Squamous Cell Carcinoma. Int J Radiat Oncol Biol Phys 2014. [DOI: 10.1016/j.ijrobp.2014.05.092] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Zhang X, Wang C, Zhang Y, Ju Z, Qi C, Wang X, Huang J, Zhang S, Li J, Zhong J, Shi F. Association between an alternative promoter polymorphism and sperm deformity rate is due to modulation of the expression of KATNAL1 transcripts in Chinese Holstein bulls. Anim Genet 2014; 45:641-51. [PMID: 24990491 DOI: 10.1111/age.12182] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/05/2014] [Indexed: 11/25/2022]
Abstract
Katanin p60 subunit A-like 1 (KATNAL1) is an ATPase that regulates Sertoli cell microtubule dynamics and sperm retention. We evaluated one novel splice variant and characterized the promoter and a functional single nucleotide polymorphism (SNP) of the bovine KATNAL1 gene to explore its expression pattern, possible regulatory mechanism and relationship with semen traits in Chinese Holstein bulls. A novel splice variant, KATNAL1 transcript variant 2 (KATNAL1-TV2) of the retained 68 bp in intron 2, was identified by RT-PCR and compared with KATNAL1 transcript variant 1 (KATNAL1-TV1, NM 001192918.1) in various tissues. Bioinformatics analyses predicted that KATNAL1 transcription was regulated by two promoters: P1 in KATNAL1-TV1 and P2 in KATNAL1-TV2. Results of qRT-PCR revealed that KATNAL1-TV1 had higher expression than did KATNAL1-TV2 in testes of adult bulls (P < 0.05). Promoter luciferase activity analysis suggested that the core sequences of P1 and P2 were mapped to the region of c.-575˜c.-180 and c.163-40˜c.333+59 respectively. One novel SNP (c.163-210T>C, ss836312085) located in intron 1 was found using sequence alignment. The SNP in P2 resulted in the presence of the DeltaE binding site, improving its basal promoter activity (P < 0.05); and we observed a greater sperm deformity rate in bulls with the genotype CC than in those with the genotype TT (P < 0.05), which indicated that different genotypes were associated with the bovine semen traits. Bioinformatics analysis of the KATNAL1 protein sequence predicted that the loss of the MIT domain in the KATNAL1-TV2 transcript resulted in protein dysfunction. These findings help us to understand that a functional SNP in P2 and subsequent triggering of expression diversity of KATNAL1 transcripts are likely to play an important role with regard to semen traits in bull breeding programs.
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