Molecular characterization and sequence variability of betasatellites associated with leaf curl disease of kenaf (hibiscus cannabinus L.) from different geographical locations of India

Leaf curl disease of kenaf (Hibiscus cannabinus L.) in India has been found to be associated with begomoviruses and betasatellites. Here, we report the molecular characterization and phylogenetic relationship of the nine isolates of betasatellites obtained from three geographical locations in India. The betasatellites coming from northern and eastern region of India shared 84.3% nucleotide sequence identity and formed two sub-clusters within the main cluster containing different isolates of Cotton leaf curl Multan betasatellite (CLCuMB) isolated in Indian subcontinent. Betasatellites coming from the southern part of India were identified as the isolates of Tomato leaf curl Joydebpur betasatellite and shared 45.2 and 44.9% sequences identity with their counterparts coming from the eastern and northern India, respectively. The present study represents the first report about the association of the leaf curl disease of kenaf with the betasatellites infecting both malvaceous and non-malvaceous crops in India.

Sol-gel synthesized SnO2 nanoparticles and their properties

Sol-gel synthesized SnO2 nanoparticles with an average size of 2.0 nm obtained at 373 K were gradually annealed to 673 K in air for 25 minutes. Sequentially taken transmission electron microscopy (TEM) images showed that particle agglomeration of these non-matrix SnO2 nanocrystals was a very slow process. The blue shifts of the band gap (approximately 2.3 eV) obtained from the optical absorbance spectra were matched with the theoretical results of the size related excitonic binding energies. These calculations also supported the observed slow grain growth. The depth sensitive hardness measurements of the thin films indicated hardness in the range of 5.03 GPa to 6.79 GPa. These undoped and non-matrix SnO2 nanoparticles were also investigated with the X-ray photoelectrons spectroscopy (XPS), atomic force microscope (AFM), X-ray diffraction spectroscopy (XRD), and ac impedance analyzer.

The other side of the coin: beneficiary effect of 'oxidative burst' upsurge with T11TS facilitates the elimination of glioma cells

Free radicals and allied molecules are the potential threats for the cellular components when they are produced in excess amount and cause different pathophysiological disorders including aging. Contrary to their detrimental effects, these molecules, in the other hand, can be utilized by the Phagocytic cells to destroy the abnormal cells and cellular components. Generation of reactive oxygen species (ROS) and nitric oxide (NO) are used as important effector molecules by Phagocytic macrophage/microglia to eliminate neoplastic cells in glioma bearing rat model. The glycoprotein T11TS/SLFA-3, by binding with CD2 receptor of macrophage/microglia, induces the generation of these reactive species when applied in three consecutive doses in glioma bearing animals. The CR3 family receptor CD11b is also correlated with the Phagocytic activity of the cells. The 'controlled' and directed production of ROS and NO by phagocytes induce cell death signals to the glioma cells and resulted in phagocytic destruction and apoptosis. The death signals generated by the free radicals and associated molecules resulted in accumulation of p53 proteins in the glioma cells. This oxidative stress induced p53 protein accumulation in neoplastic cells direct them to die by apoptosis. Therefore, the same oxidative stress causing pathophysiological problems, are used here to destroy the glioma cells by the macrophage/microglia in the delicate CNS tissue.

Clinical management of babesiosis in dogs with homeopathic Crotalus horridus 200C

Homeopathic Crotalus horridus 200C was evaluated in 13 clinical cases of babesiosis in dogs, compared with another 20 clinical cases treated with diminazine. Babesiosis is an important tropical tick-borne haemoprotozoan disease in dogs clinically manifested by anorexia, dehydration, temperature, dullness/depression, diarrhoea/constipation, pale mucosa, hepatomegaly, vomiting/nausea, splenomegaly, distended abdomen/ascites, yellow coloured urine, emaciation/weight loss, and occular discharge. The diagnosis of babesiosis was based on cytological evidence of Babesia gibsoni in freshly prepared blood smears. The dogs were treated with oral C. horridus 200C, 4 pills four times daily for 14 days (n=13) or diminazine aceturate 5 mg/kg single intramuscularly dose (n=20). All the dogs were administered 5% Dextrose normal saline at 60 ml/kg intravenously for 4 days. Initial clinical scores were similar in both groups and showed similar progressive improvement with the two treatments over 14 days. Parasitaemia also improved in both groups, but haematological values showed no change. No untoward reactions were observed. It appears that C. horridus is as effective in causing clinical recovery in moderate cases of canine babesiosis caused by Babesia gibsoni as the standard drug diminazine. Large scale randomized trials are indicated for more conclusive results.

A sequential scanning of the immune efficiency in astrocytoma (Grade I to Grade Iii), meningioma and secondary glioma patients with and without therapeutic scheduling

PURPOSE

Glioma induces immune suppression. However, data revealing the immune status in glioma patients with sequential therapeutic interventions is missing. Thus, the study aims at evaluating the sequential immune status of glioma bearing patients (Astrocytoma Grade I to Grade III) receiving conventional therapeutic measures. The results were compared with the immune status of metastatic secondary glioma and meningioma patients where there is minimal immune suppression and the effect of therapeutic intervention on the above score.

METHODS

Functional immune parameters of peripheral blood lymphocytes were assayed by CD2 receptors enumeration through E-rosetting and lymphocyte cytotoxicity assay and assessing the generation of reactive oxygen species by NBT assay of peripheral blood macrophages in patient groups bearing Astrocytoma (Grade I to Grade III), meningioma and secondary glioma.

RESULTS

Patients bearing Astrocytoma (all 3 grades) showed maximum immune suppression as compared to the normal subjects, diseased meningioma controls, and secondary glioma. Therapeutic interventions viz. radiotherapy, surgery and radiotherapy after surgery and chemotherapy could not recover the suppressed activity of the CD2 bearing lymphocytes and that of peripheral blood macrophages. However, therapeutic scheduling could recover the functional activity of the CD8 bearing lymphocytes and the CD56 NK cells from that of tumor bearing patients.

CONCLUSION

Astrocytoma and not meningioma is capable of causing immunesuppression. As the tumor progresses from Grade I to Grade III, a linear reduction in the functional efficacy of immunocytes is seen to occur. Radiotherapy, surgery, and chemotherapy also induces an inhibitory effect towards the host immune system. The inhibitory effect of tumor as well as of therapy were mainly directed towards the CD2 bearing lymphocyte population and the peripheral blood macrophage population.

Morphology and size dependent optical properties of CdS nanostructures

CdS nanoparticles with different sizes ranging from 2.5 nm to 300 nm and nanorods with aspect ratio -32 were synthesized by simple solvothermal process with a view to explore the effect of size and shape on the optical properties of these nanoforms. Solvent, temperature and the Cd source played important role in determining the morphologies and sizes of the nanocrystals. Comparative study of the optical properties of these nanoforms showed systematic changes in the optical absorption spectra with the reduction in particle size. Nanorods showed bulk like properties. Photoluminescence and Raman studies were carried out to explore the size and morphology dependent optical properties of the CdS nanoforms.

Why does ethanol induce cellular heat-shock response?

At the time of induction of the periplasmic protein alkaline phosphatase (AP) in Escherichia coli, the presence of ethanol (10% v/v) in the growth medium did not allow the induced AP to be translocated out to the periplasm. The nontransported AP was stored in the cytoplasm as the unfolded precursor form (AP with its amino-terminal signal sequence), which had no enzymatic activity. The presence of 10% v/v ethanol in the growth medium also induced the heat-shock response in E. coli, which was evident from the enhanced syntheses of several heat-shock proteins (HSPs) over their cellular basal levels. These results, in conjunction with our earlier findings on the occurrence of heat-shock response in an AP-signal sequence mutant of E. coli due to the export deficiency of AP precursor, suggest that the membrane protein precursors, stored in the cytoplasm due to the ethanol-mediated inhibition of translocation, behaved to the cells as abnormal proteins, which ultimately triggered the signal for the induction of heat-shock response in E. coli.

Hydrogen production by Cyanobacteria

The limited fossil fuel prompts the prospecting of various unconventional energy sources to take over the traditional fossil fuel energy source. In this respect the use of hydrogen gas is an attractive alternate source. Attributed by its numerous advantages including those of environmentally clean, efficiency and renew ability, hydrogen gas is considered to be one of the most desired alternate. Cyanobacteria are highly promising microorganism for hydrogen production. In comparison to the traditional ways of hydrogen production (chemical, photoelectrical), Cyanobacterial hydrogen production is commercially viable. This review highlights the basic biology of cynobacterial hydrogen production, strains involved, large-scale hydrogen production and its future prospects. While integrating the existing knowledge and technology, much future improvement and progress is to be done before hydrogen is accepted as a commercial primary energy source.

Synthesis and Optical Properties of CdS Nanoribbons

Rapid production of single crystalline CdS nanoribbons with hexagonal wurtzite phase has been achieved by thermal evaporation of CdS powder on Si wafers. The flow rate of the carrier (Ar) gas along with the synthesis temperature plays an important role in defining the size and shape of the CdS nanoribbons. Scanning electron and transmission electron microscopic observations revealed the nanoribbons to have a flat end as well as side surfaces which will make it ideal for optoelectronic devices such as nanolasers and light emitting diodes based on individual nanoribbons. The nanoribbons have widths within 200-400 nm and lengths approximately a few hundred micrometers. Room-temperature photoluminescence measurements show green emission centered at approximately 525 nm which may be ascribed to the near band edge emission. The Raman spectra of the CdS nanoribbons show peaks around 304, 609, 915, and 1220 cm(-1) corresponding to the first-, second-, third-, and fourth-order longitudinal optical phonon modes, respectively.

Hepatitis B infection in Eastern Indian families: need for screening of adult siblings and mothers of adult index cases

OBJECTIVES

India, with its 43 million hepatitis B virus (HBV) carriers and absence of any national immunization programme, adds a substantial number of HBV infections to the HBV carrier pool yearly. The aim of this study was to assess the spread of HBV infection in families with an infected member and to identify the family members with the highest risk of infection in our community.

METHODS

A total of 937 serum samples from 215 HBV-infected cases and 722 members of their households were screened prospectively for markers of HBV by commercial enzyme-linked immunosorbent assay.

RESULTS

Among family members, 140 (19.4%) were HBsAg positive and 272 (37.6%) were negative for HBsAg but positive for either anti HBc or anti HBs. There were 145 HBsAg-positive adults among the index cases whose 133 adult siblings, 59 spouses and 59 mothers participated in the study. Interestingly, 28.81% mothers and 28.57% adult siblings of these adult index cases were positive for HBsAg compared with only 8.75% of their spouses (P < 0.001). Only 15.2% of the HBsAg-positive women in the childbearing age group were found to be HBeAg positive.

CONCLUSIONS

Our results suggest that intrafamilial childhood horizontal transmission is important for HBV transmission in our community, and highlight the need for screening of adult siblings and mothers of adult HBsAg carriers in addition to their spouses and children.

CBFbeta-SMMHC slows proliferation of primary murine and human myeloid progenitors

CBFbeta-SMMHC is expressed in 8% of acute myeloid leukemias and inhibits AML1/RUNX1. In this study, murine marrow or human CD34(+) cells were transduced with retroviral or lentiviral vectors expressing CBFbeta-SMMHC or two mutant variants. CBFbeta-SMMHC reduced murine or human myeloid cell proliferation three- to four-fold in liquid culture relative to empty vector-transduced cells, during a period when vector-transduced cells accumulated five-fold and human cells 20-fold. CBFbeta-SMMHC decreased the formation of myeloid, but not erythroid, colonies two- to four-fold, and myeloid colonies expressing CBFbeta-SMMHC were markedly reduced in size. However, CBFbeta-SMMHC did not slow differentiation to granulocytes or monocytes. Neither CBFbeta-SMMHC(Delta2-11), which does not bind AML1, nor CBFbeta-SMMHC(DeltaACD), which does not multimerize or efficiently bind corepressors, slowed proliferation or reduced myeloid colonies. CBFbeta-SMMHC increased the G1/S ratio 1.4-fold. AML1 had an effect opposite to CBFbeta-SMMHC, stimulating proliferation of murine myeloid progenitors 2.0-fold in liquid culture. Thus, CBFbeta-SMMHC directly inhibits the proliferation of normal myeloid progenitors via inhibition of AML1 and dependent upon the integrity of its assembly competence domain. These findings support the development of therapeutics that target the ability of CBFbeta-SMMHC to interact with AML1 or to multimerize via its assembly competence domain.

Stem cells and frontiers of therapeutic advances in cancer

Cancer is a dreadful disease characterized by unscheduled and uncontrolled abnormal cell proliferation. The cause(s) of cancer incidence are varied and involve multiple etiological factors. Recent studies provided ample evidences that apart from the chemo- and radio-therapeutic approaches, the immunological defense can be manipulated as an effective therapeutic module by directing immuno-competent cells against the cancer target. This ultimately constituted the anti-cancer cytotherapy or cell therapy, which included the natural killer (NK) cells, specifically directed cytotoxic cells, dendritic cells and other immune-killer cells. Stem cells, above all, occupied the most important position by contributing to the constituent cellular potential on one hand, and, secondly, acting as a docile vehicle for targeted gene therapy. Worldwide, attempts are now being made to achieve successful therapeutic approaches with stem cells against both haematological malignancies as well as various solid tumors. The adult stem cell corpuscular therapy has been reported to be the most inspiring and safe module for cancer therapy.

Documentation of immune profile of microglia through cell surface marker study in glioma model primed by a novel cell surface glycopeptide T11TS/SLFA-3

STATEMENT OF THE PROBLEM

The sheep erythrocyte membrane glycoprotein T11TS/SLFA-3 can form a ligand-receptor complex with CD2 present on immunocyte and exert stimuli for activation and proliferation. Regression of brain tumor with the application of T11TS indicates the probable role of microglia, the chief immunomodulatory cell within the brain compartment. In the present study microglial activation and immunophenotypic modulation were assessed in T11TS treated brain tumor-bearing animal models. Rat glioma models induced by chemical carcinogen ENU were treated with three consecutive doses of T11TS. Microglial cells from brain were isolated and assessed through E-rosette formation, SEM and FACS for CD2, MHC class II, CD25, and CD4. The preliminary indication of presence of CD2 on microglia through E-rosette formation was confirmed by SEM and FACS. MHC class II and CD2 single and double positive subpopulations exist, and their expression is also modulated in different doses of T11TS. A general trend of highest receptor saturation and microglial activation, measured through the activation marker CD25 and CD4 expression, was observed in 2nd dose of T11TS administration, which was then dampened via a complex immune feedback mechanism in the 3rd dose.

Molecular epidemiology of HCV infection among acute and chronic liver disease patients in Kolkata, India

BACKGROUND

In recent years, hepatitis C virus (HCV) infection is gaining importance in Asian countries. Recent studies conducted in different parts of the world revealed that there is a genotypic correlation of disease severity and treatment outcome.

OBJECTIVES

A detailed study was carried out to delineate the genotypic distribution of HCV among acute and chronic liver disease patients in Kolkata, a city in eastern India.

STUDY DESIGN

Acute and chronic liver disease was diagnosed among patients attending hepatitis clinics in the city. Anti-HCV ELISA was performed on the blood samples of the cases and positive samples were tested for presence of HCV-RNA and genotyping of the samples were carried out by reverse transcription and polymerase chain reaction (RT-PCR) and sequencing.

RESULTS

Seroprevalence of HCV infection among acute (11.0%) and chronic (25.3%) hepatitis patients were high and among them 97 (75.8%) and 323 (86.1%) were HCV-RNA positive for acute and chronic hepatitis patients, respectively. Genotyping by PCR showed that the predominant genotype was 3b (42.3%) followed by 3a (28.9%) among acute hepatitis group whereas among chronic hepatitis group, the most prevalent genotypes were 3a (34.7%) and 3b (47.7%). Sequence analysis of the untypeable isolates revealed the presence of a rare subtype 6b.

CONCLUSIONS

The study revealed very high prevalence of HCV among acute and chronic hepatitis patients with predominance of genotype 3. Subtype 6b was commonly found in Thailand but not in India. The detection of this rare strain of Thai origin reveals the spread of HCV infection from Thailand to other parts of Asia. This observation necessitates further intensive surveillance of HCV infection in India to unravel the distribution of genotypes in the country and to correlate disease severity and treatment outcome to the genotype prevalence.

Photoluminescence and raman study of CdS-Al2O3 nanocomposite films prepared by sol-gel techniques

The optical and microstructural properties of CdS-Al2O3 nanocomposite (CdS-Al2O3 = 20:80 to 50:50) thin films synthesized by sol-gel techniques were studied. Optical transmission spectra indicated a marked blue shift of the absorption edge due to quantum confinement. Band gaps of CdS-Al2O3 nanocomposites were found to vary in the range 3.69-2.61 eV. The sizes of the nanocrystals, estimated from the blue shift (0.2-1.2 eV) of the absorption edges and transmission electron microscopy, were found to vary in the range 2.8-7.0 nm. X-ray diffraction studies showed reflections from (111), (200), (220), and (311) planes of CdS in the cubic phase. Microstructural characterization by high-resolution transmission electron microscope (HRTEM) indicated well crystallinity of the nanoparticles and lattice fringes supported the cubic phase of CdS. Raman spectroscopy was carried out for CdS-Al2O3 nanocomposites, which indicated a prominent peak at approximately 299 cm(-1). Significant changes in the peak position and intensity of the Raman peak were observed with varying the annealing temperature (373-573 K). Photoluminescence measurements indicated a prominent broad peak at approximately 1.81 eV due to the surface defects in the CdS nanocrystallites. The present study revealed Al2O3 to be a good capping material for CdS nanoparticles.

Inactive enzymatic mutant proteins (phosphoglycerate mutase and enolase) as sugar binders for ribulose-1,5-bisphosphate regeneration reactors

Background

Carbon dioxide fixation bioprocess in reactors necessitates recycling of D-ribulose1,5-bisphosphate (RuBP) for continuous operation. A radically new close loop of RuBP regenerating reactor design has been proposed that will harbor enzyme-complexes instead of purified enzymes. These reactors will need binders enabling selective capture and release of sugar and intermediate metabolites enabling specific conversions during regeneration. In the current manuscript we describe properties of proteins that will act as potential binders in RuBP regeneration reactors.

Results

We demonstrate specific binding of 3-phosphoglycerate (3PGA) and 3-phosphoglyceraldehyde (3PGAL) from sugar mixtures by inactive mutant of yeast enzymes phosphoglycerate mutase and enolase. The reversibility in binding with respect to pH and EDTA has also been shown. No chemical conversion of incubated sugars or sugar intermediate metabolites were found by the inactive enzymatic proteins. The dissociation constants for sugar metabolites are in the micromolar range, both proteins showed lower dissociation constant (Kd) for 3-phosphoglycerate (655–796 μM) compared to 3-phosphoglyceraldehyde (822–966 μM) indicating higher affinity for 3PGA. The proteins did not show binding to glucose, sucrose or fructose within the sensitivity limits of detection. Phosphoglycerate mutase showed slightly lower stability on repeated use than enolase mutants.

Conclusions

The sugar and their intermediate metabolite binders may have a useful role in RuBP regeneration reactors. The reversibility of binding with respect to changes in physicochemical factors and stability when subjected to repeated changes in these conditions are expected to make the mutant proteins candidates for in-situ removal of sugar intermediate metabolites for forward driving of specific reactions in enzyme-complex reactors.

Depth estimation and image restoration using defocused stereo pairs

We propose a method for estimating depth from images captured with a real aperture camera by fusing defocus and stereo cues. The idea is to use stereo-based constraints in conjunction with defocusing to obtain improved estimates of depth over those of stereo or defocus alone. The depth map as well as the original image of the scene are modeled as Markov random fields with a smoothness prior, and their estimates are obtained by minimizing a suitable energy function using simulated annealing. The main advantage of the proposed method, despite being computationally less efficient than the standard stereo or DFD method, is simultaneous recovery of depth as well as space-variant restoration of the original focused image of the scene.

Sequencing and sequence analysis of VP7 and NSP5 genes reveal emergence of a new genotype of bovine group B rotaviruses in India

Three bovine group B rotavirus strains were detected from diarrheic calves during a surveillance study of rotaviral diarrhea in West Bengal, India. The sequence analysis of VP7 and NSP5 genes of these strains demonstrates a high degree of sequence variation from other group B rotavirus strains, indicating the emergence of a new genotype.

Pluripotent bone marrow cells in leukemic mice elicit enhanced immune reactivity following sheep erythrocyte administration in-vivo. A possible S-LFA3 interactive immunotherapy

Reports concerning the compartmentwise immunoreactivity and migratory property of the bone marrow derived stem/progenitor cells have been poorly documented. The present study shows that both in normal and leukemic mice a low density group of bone marrow cells (LDC) are functionally less matured than a high density group of cells (HDC) as revealed from spontaneous E-rosetting, cytotoxic efficacy and phagocytic function against the targets which correlated well with the migratory activity of the cells from LDC to HDC compartment. This is deranged in leukaemic groups of animals. Administration of Sheep Erythrocytes (SRBC) significantly increased the CD34+ cell population as evident through flowcytometric (FACS) analysis and the above immune reactivity in leukemic mice. The results indicated that, (a) bone marrow cells comprising the major fractions of immature cells are capable of eliciting immune-reactivity against the targets in normal and (b) poorly in leukemic mice and that (c) sheep red blood cells could effectively trigger such immunological functions together with enhanced maturation dependent migration in leukemic mice. The study hints at therapeutic potentiality of SRBC or its determinant molecule TIITS or Sheep-leucocyte function antigen 3 (S-LFA3/CD 58) in stimulating the stem and progenitor cells in vivo.

Role of biomodulators and involvement of protein tyrosine kinase on stem cell migration in normal and leukaemic mice

Tyrosine kinase has an important role with regard to self-renewal and as a comitogen in the movement of stem cells out of the haemopoietic stem cell pool into the progeny pool. The present investigation has an objective to evaluate the protein tyrosine kinase (PTK) activity of bone marrow derived pluripotent cells before and after application of biological response modifiers (BRMs) in normal and leukaemic mice. The PTK activity of the cytosolic fraction of bone marrow cells has been determined by the assay kit based on per-oxidase labeled substrate analog and biotin-streptavidin expression. A consequent cell population kinetic study has also been conducted. Results showed a higher activity in the cells of leukaemic mice, which under the influence of interleukin-2 (IL-2) and the non-specific BRM sheep erythrocytes (SRBC) undergo further activation. Interferon-gamma (IFN-gamma) when administered alone showed a suppressive effect and the combination of the three manifested a resultant suppression. Corresponding migration (cell population kinetics) of the bone marrow cells (BMC) also correlated well with the PTK activity of the cells concerned. The observations indicated that the pluripotent BMCs are under regulated control of the PTK activity, which can be manipulated by selective BRMs. The data also suggested the therapeutic benefit of IFN-gamma along with chemotherapeutics against leukaemia and that of IL-2 and SRBC during bone marrow failure.