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Gray JA, Chandry PS, Kaur M, Kocharunchitt C, Bowman JP, Fox EM. Novel Biocontrol Methods for Listeria monocytogenes Biofilms in Food Production Facilities. Front Microbiol 2018; 9:605. [PMID: 29666613 PMCID: PMC5891606 DOI: 10.3389/fmicb.2018.00605] [Citation(s) in RCA: 76] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2017] [Accepted: 03/15/2018] [Indexed: 11/13/2022] Open
Abstract
High mortality and hospitalization rates have seen Listeria monocytogenes as a foodborne pathogen of public health importance for many years and of particular concern for high-risk population groups. Food manufactures face an ongoing challenge in preventing the entry of L. monocytogenes into food production environments (FPEs) due to its ubiquitous nature. In addition to this, the capacity of L. monocytogenes strains to colonize FPEs can lead to repeated identification of L. monocytogenes in FPE surveillance. The contamination of food products requiring product recall presents large economic burden to industry and is further exacerbated by damage to the brand. Poor equipment design, facility layout, and worn or damaged equipment can result in Listeria hotspots and biofilms where traditional cleaning and disinfecting procedures may be inadequate. Novel biocontrol methods may offer FPEs effective means to help improve control of L. monocytogenes and decrease cross contamination of food. Bacteriophages have been used as a medical treatment for many years for their ability to infect and lyse specific bacteria. Endolysins, the hydrolytic enzymes of bacteriophages responsible for breaking the cell wall of Gram-positive bacteria, are being explored as a biocontrol method for food preservation and in nanotechnology and medical applications. Antibacterial proteins known as bacteriocins have been used as alternatives to antibiotics for biopreservation and food product shelf life extension. Essential oils are natural antimicrobials formed by plants and have been used as food additives and preservatives for many years and more recently as a method to prevent food spoilage by microorganisms. Competitive exclusion occurs naturally among bacteria in the environment. However, intentionally selecting and applying bacteria to effect competitive exclusion of food borne pathogens has potential as a biocontrol application. This review discusses these novel biocontrol methods and their use in food safety and prevention of spoilage, and examines their potential to control L. monocytogenes within biofilms in food production facilities.
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Seko Y, Hayasaka D, Nishino A, Uchida T, Sánchez-Bayo F, Sawahata T. Host-Tree Selection by the Invasive Argentine Ant (Hymenoptera: Formicidae) in Relation to Honeydew-Producing Insects. JOURNAL OF ECONOMIC ENTOMOLOGY 2018; 111:319-326. [PMID: 29329403 DOI: 10.1093/jee/tox351] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
The Argentine ant, Linepithema humile (Mayr; Hymenoptera: Formicidae), is one of the world's most hazardous invasive species, and thus its eradication from Japan is important. Physical and chemical controls can be expensive and cause strong adverse effects on local terrestrial ecosystems regardless of their high efficacy. Here, presence/absence of host-tree selection by Argentine ants was investigated to understand the ant-honeydew-producing insects interactions in order to develop new cultural controls compatible with biodiversity conservation. Abundance of Argentine ants and their tree utilization ratio was measured among dominant roadside trees (Cinnamomum camphora, Myrica rubra, Nerium indicum, Rhaphiolepis indica var. umbellata, Juniperus chinensis var. kaizuka) in two areas around Kobe, Japan. Almost all ants collected were Argentine ants suggesting that native ants would have been competitively excluded. Tree utilization of Argentine ants clearly differed among host trees. Abundance of both Argentine ants and honeydew-producing insects and tree utilization rate of the ants were significantly lower in especially C. camphora and J. chinensis. Few Argentine ants were observed trailing on C. camphora, J. Chinensis, and N. indicum, most probably due to low abundance of honeydew-producing insects on these trees with the toxic and repellent chemical components. On the other hand, high abundance of both Argentine ants and homopterans were found in M. rubra and especially R. indica. We suggest that reductions of R. indica and M. rubra would lead to a decrease in abundance of honeydew-producing insects, and thus effectively control populations of Argentine ants. At the same time, planting of C. camphora, J. Chinensis, and N. indicum may also play a role in restraint efficacy against invasion of the invasive ants.
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Okano JI, Tayasu I, Nakano SI, Okuda N. Differential Responses of Two Ecologically Similar Case-Bearing Caddisfly Species to a Fish Chemical Cue: Implications for a Coexistence Mechanism. Zoolog Sci 2017; 34:461-467. [PMID: 29219044 DOI: 10.2108/zs160207] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
The mechanisms for the coexistence of multiple species occupying the same ecological niche are often puzzling. Predator effects on competitively superior species is one possible mechanism. In this study, we tested whether the presence of size-selective predators (fishes) acts as a mechanism for the coexistence of two species of case-bearing caddisfly larvae, Perissoneura paradoxa and Psilotreta kisoensis (Odontoceridae, Trichoptera). The larvae of these two species have similar ecological and life history traits except their body size, and they have been found to coexist only in habitats shared with predatory fishes. Experiments on intra and interspecific competition revealed that the larger Pe. paradoxa always outcompeted the smaller Ps. kisoensis in the absence of predatory fishes, suggesting that Pe. paradoxa performed intra-guild predation on Ps. kisoensis. We also conducted experiments to examine how strongly each of these species responded in terms of case repair with/without a predator chemical cue after their cases were partly dismantled. Perissoneura paradoxa exhibited a stronger case repair response in the presence of a predator chemical cue than that exhibited by Ps. kisoensis, suggesting that Pe. paradoxa is more vulnerable to fish predation, probably because their body size is in the preferred prey range of fishes. We suggest that the presence of predators works in the favor of smaller, subordinate species through size-selective predator effects, enabling these two competitive species to coexist in the same habitat.
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Fukuda K. Is it feasible to control pathogen infection by competitive binding of probiotics to the host? Virulence 2017; 8:1502-1505. [PMID: 28934003 DOI: 10.1080/21505594.2017.1382798] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022] Open
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Grether GF, Peiman KS, Tobias JA, Robinson BW. Causes and Consequences of Behavioral Interference between Species. Trends Ecol Evol 2017; 32:760-772. [PMID: 28797610 DOI: 10.1016/j.tree.2017.07.004] [Citation(s) in RCA: 90] [Impact Index Per Article: 12.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2017] [Revised: 07/10/2017] [Accepted: 07/18/2017] [Indexed: 11/18/2022]
Abstract
Behavioral interference between species, such as territorial aggression, courtship, and mating, is widespread in animals. While aggressive and reproductive forms of interspecific interference have generally been studied separately, their many parallels and connections warrant a unified conceptual approach. Substantial evidence exists that aggressive and reproductive interference have pervasive effects on species coexistence, range limits, and evolutionary processes, including divergent and convergent forms of character displacement. Alien species invasions and climate change-induced range shifts result in novel interspecific interactions, heightening the importance of predicting the consequences of species interactions, and behavioral interference is a fundamental but neglected part of the equation. Here, we outline priorities for further theoretical and empirical research on the ecological and evolutionary consequences of behavioral interference.
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Competitive Exclusion Reduces Transmission and Excretion of Extended-Spectrum-β-Lactamase-Producing Escherichia coli in Broilers. Appl Environ Microbiol 2017; 83:AEM.03439-16. [PMID: 28314728 DOI: 10.1128/aem.03439-16] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2017] [Accepted: 03/14/2017] [Indexed: 11/20/2022] Open
Abstract
Extended-spectrum β-lactamases (ESBLs) and plasmid-mediated AmpC β-lactamases (pAmpC) are enzymes able to hydrolyze a large variety of β-lactam antibiotics, including third-generation cephalosporins and monobactams. Broilers and broiler meat products can be highly contaminated with ESBL- and pAmpC-producing Escherichia coli strains, also known as extended-spectrum cephalosporin (ESC)-resistant E. coli strains, and can be a source for human infections. As few data on interventions to reduce the presence of ESC-resistant E. coli in broilers are available, we used transmission experiments to examine the role of competitive exclusion (CE) on reducing transmission and excretion in broilers. A broiler model to study the transmission of ESC-resistant E. coli was set up. Day-old chickens were challenged with an ESBL-producing E. coli strain isolated from healthy broilers in the Netherlands. Challenged and not challenged chicks were housed together in pairs or in groups, and ESBL-producing E. coli transmission was monitored via selective culturing of cloacal swab specimens. We observed a statistically significant reduction in both the transmission and excretion of ESBL-producing E. coli in chicks treated with the probiotic flora before E. coli challenge compared to the transmission and excretion in untreated controls. In conclusion, our results support the use of competitive exclusion as an intervention strategy to control ESC-resistant E. coli in the field.IMPORTANCE Extended-spectrum β-lactamases (ESBLs) and plasmid-mediated AmpC β-lactamases are a primary cause of resistance to β-lactam antibiotics among members of the family Enterobacteriaceae in humans, animals, and the environment. Food-producing animals are not exempt from this, with a high prevalence being seen in broilers, and there is evidence pointing to a possible foodborne source for human contamination. We investigated the effect of administration of a commercial probiotic product as an intervention to reduce the amount of ESBL-producing Escherichia coli in broilers. Our results showed a substantial reduction in the level of colonization of broiler intestines by ESBL-producing E. coli after administration of commercial probiotic product. The protective effect provided by these probiotics could be implemented on a larger scale in poultry production. Reductions in the levels of ESBL-producing Enterobacteriaceae in the food chain would considerably benefit public health.
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Mañes-Lázaro R, Van Diemen PM, Pin C, Mayer MJ, Stevens MP, Narbad A. Administration of Lactobacillus johnsonii FI9785 to chickens affects colonisation by Campylobacter jejuni and the intestinal microbiota. Br Poult Sci 2017; 58:373-381. [PMID: 28318296 DOI: 10.1080/00071668.2017.1307322] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
1. Campylobacter jejuni is the most common bacterial cause of human food-borne gastroenteritis in the world. A major source of human infection is the consumption of contaminated meat, particularly poultry. New control measures to reduce or eliminate this pathogen from the animal gastrointestinal tract are urgently required, and the use of probiotics as competitive exclusion agents is a promising biocontrol measure to reduce C. jejuni in the food chain. 2. In this study, we assessed the potential of Lactobacillus johnsonii FI9785, which has shown efficacy against Clostridium perfringens, to combat C. jejuni. The effect of prophylactic administration of L. johnsonii on the ability of C. jejuni to colonise chickens was determined. 3. Two doses of L. johnsonii given a week apart led to a reduction in C. jejuni colonisation in the caecal contents, but this biocontrol seemed reliant upon a high level of initial colonisation by the probiotic. 4. The microbial composition in the chicken gut was significantly altered by the probiotic treatment, as shown by denaturing gradient gel electrophoresis of 16S rRNA gene amplicons. 5. Together these results demonstrate the potential of this probiotic strain to be tested further as a competitive exclusion agent in poultry against C. jejuni.
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Taillefumier T, Posfai A, Meir Y, Wingreen NS. Microbial consortia at steady supply. eLife 2017; 6. [PMID: 28473032 PMCID: PMC5419753 DOI: 10.7554/elife.22644] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2016] [Accepted: 03/04/2017] [Indexed: 11/13/2022] Open
Abstract
Metagenomics has revealed hundreds of species in almost all microbiota. In a few well-studied cases, microbial communities have been observed to coordinate their metabolic fluxes. In principle, microbes can divide tasks to reap the benefits of specialization, as in human economies. However, the benefits and stability of an economy of microbial specialists are far from obvious. Here, we physically model the population dynamics of microbes that compete for steadily supplied resources. Importantly, we explicitly model the metabolic fluxes yielding cellular biomass production under the constraint of a limited enzyme budget. We find that population dynamics generally leads to the coexistence of different metabolic types. We establish that these microbial consortia act as cartels, whereby population dynamics pins down resource concentrations at values for which no other strategy can invade. Finally, we propose that at steady supply, cartels of competing strategies automatically yield maximum biomass, thereby achieving a collective optimum.
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Martcheva M, Tuncer N, Kim Y. On the principle of host evolution in host-pathogen interactions. JOURNAL OF BIOLOGICAL DYNAMICS 2017; 11:102-119. [PMID: 26998890 DOI: 10.1080/17513758.2016.1161089] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
In this paper, we use a two-host one pathogen immuno-epidemiological model to argue that the principle for host evolution, when the host is subjected to a fatal disease, is minimization of the case fatality proportion [Formula: see text]. This principle is valid whether the disease is chronic or leads to recovery. In the case of continuum of hosts, stratified by their immune response stimulation rate a, we suggest that [Formula: see text] has a minimum because a trade-off exists between virulence to the host induced by the pathogen and virulence induced by the immune response. We find that the minimization of the case fatality proportion is an evolutionary stable strategy for the host.
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85
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Kavallieratos NG, Athanassiou CG, Guedes RNC, Drempela JD, Boukouvala MC. Invader Competition with Local Competitors: Displacement or Coexistence among the Invasive Khapra Beetle, Trogoderma granarium Everts (Coleoptera: Dermestidae), and Two Other Major Stored-Grain Beetles? FRONTIERS IN PLANT SCIENCE 2017; 8:1837. [PMID: 29163574 PMCID: PMC5681968 DOI: 10.3389/fpls.2017.01837] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2017] [Accepted: 10/10/2017] [Indexed: 05/09/2023]
Abstract
Local potential competitor species are important determinants of the invasibility of an environment even when widely recognized invasive species are concerned since it may compromise its establishment. Thus, the outcome of the direct competition among the invasive khapra beetle, Trogoderma granarium, and the cosmopolitan species lesser grain borer, Rhyzopertha dominica and rice weevil, Sitophilus oryzae, and thus the likelihood of establishment of T. granarium under their co-occurrence, was here explored in paddy rice and wheat, at temperatures between 25 and 35°C and through 200 days of storage. Insect infestations were higher in wheat rather than in paddy rice. Trogoderma granarium was unable to displace any of the competing species under two and three-species competition experiments retaining lower adult population than both local competitors at the lowest temperature level. Rhyzopertha dominica prevailed in paddy rice, while S. oryzae prevailed in wheat. Paradoxically, T. granarium adults retained low population growth but contributed more for the total frass production and grain loss, much more than that recorded for R. dominica. Nonetheless, T. granarium larvae exhibited high population numbers 130 days after the introduction of the parental individuals. At higher temperature levels (30 and 35°C) the numbers of T. granarium larvae were extremely high even after 65 days, while the numbers of the other two species rapidly declined. Interestingly, the simultaneous presence of R. dominica and S. oryzae was beneficial for the population growth of T. granarium. Consequently, T. granarium has the ability to outperform other primary stored-product insects at high temperatures, while its presence at low temperatures remains for long periods apparently unaffected by other co-occurring species. Hence, T. granarium, in wheat, is able to outcompete other major species of stored-product insects at elevated temperatures, while at 25°C this species can maintain low numbers of individuals for long periods, which can rapidly produce population outbursts when the prevailing conditions are suitable for its development.
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86
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Dang YX, Li XZ, Martcheva M. Competitive exclusion in a multi-strain immuno-epidemiological influenza model with environmental transmission. JOURNAL OF BIOLOGICAL DYNAMICS 2016; 10:416-456. [PMID: 27608293 DOI: 10.1080/17513758.2016.1217355] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
In this paper, a multi-strain model that links immunological and epidemiological dynamics across scales is formulated. On the within-host scale, the n strains eliminate each other with the strain having the largest immunological reproduction number persisting. However, on the population scale, we extend the competitive exclusion principle to a multi-strain model of SI-type for the dynamics of highly pathogenic flu in poultry that incorporates both the infection age of infectious individuals and biological age of pathogen in the environment. The two models are linked through the age-since-infection structure of the epidemiological variables. In addition the between-host transmission rate, the shedding rate of individuals infected by strain j and the disease-induced death rate depend on the within-host viral load. The immunological reproduction numbers [Formula: see text] and the epidemiological reproduction numbers [Formula: see text] are computed. By constructing a suitable Lyapunov function, the global stability of the infection-free equilibrium in the system is obtained if all reproduction numbers are smaller or equal to one. If [Formula: see text], the reproduction number of strain j is larger than one, then a single-strain equilibrium, corresponding to strain j exists. This single-strain equilibrium is globally stable whenever [Formula: see text] and [Formula: see text] is the unique maximal reproduction number and all of the reproduction numbers are distinct. That is, the strain with the maximal basic reproduction number competitively excludes all other strains.
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87
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Geheber AD, Geheber PK. The effect of spatial scale on relative influences of assembly processes in temperate stream fish assemblages. Ecology 2016; 97:2691-2704. [PMID: 27859111 DOI: 10.1002/ecy.1503] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/14/2015] [Revised: 05/18/2016] [Accepted: 06/01/2016] [Indexed: 11/09/2022]
Abstract
Understanding how biotic and abiotic processes influence community assembly is a fundamental aim in ecology. Although spatial scales at which communities are studied may affect the relative importance of such assembly processes, spatial influences on community assembly have not been thoroughly addressed. We tested how spatial scale affects inferences of habitat filtering and competitive exclusion assembly processes in darter (Percidae: Etheostomatinae) assemblages across four temperate stream systems. We predicted competitive exclusion would influence assembly in fine-scale assemblages, and habitat filtering would be more influential as spatial scale increased. Moreover, we assumed that habitat heterogeneity would increase with scale, and consequently alleviate direct competitive exclusion acting at finer scales. Using a framework that incorporated genetic relatedness, morphological traits, and habitat use among co-occurring darter species, we identified ecological and evolutionary patterns of structure, which allowed us to elucidate processes of assembly. Based on phylogenetic structure, assemblages showed an increase in habitat filtering (i.e., increased phylogenetic clustering) as we scaled up from fine to intermediate assemblages; however, we found mixed signals for habitat filtering and competitive exclusion at the broadest spatial scale. While habitat filtering was found to have an overall high relative importance during assembly, we also found influence of competitive exclusion processes based on limited morphological similarity among co-occurring species. Our results generally support an increased influence of habitat filtering processes in broader scale assemblages. Moreover, we suggest that habitat filtering and competitive exclusion processes act simultaneously during assembly, although the relative influence of each process may be spatial-scale dependent.
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88
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Lafferty KD, Suchanek TH. Revisiting Paine's 1966 Sea Star Removal Experiment, the Most-Cited Empirical Article in the American Naturalist. Am Nat 2016; 188:365-78. [PMID: 27622872 DOI: 10.1086/688045] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
"Food Web Complexity and Species Diversity" (Paine 1966) is the most-cited empirical article published in the American Naturalist. In short, Paine removed predatory sea stars (Pisaster ochraceus) from the rocky intertidal and watched the key prey species, mussels (Mytilus californianus), crowd out seven subordinate primary space-holding species. However, because these mussels are a foundational species, they provide three-dimensional habitat for over 300 associated species inhabiting the mussel beds; thus, removing sea stars significantly increases community-wide diversity. In any case, most ecologists cite Paine (1966) to support a statement that predators increase diversity by interfering with competition. Although detractors remained skeptical of top-down effects and keystone concepts, the paradigm that predation increases diversity spread. By 1991, "Food Web Complexity and Species Diversity" was considered a classic ecological paper, and after 50 years it continues to influence ecological theory and conservation biology.
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Varmuzova K, Kubasova T, Davidova-Gerzova L, Sisak F, Havlickova H, Sebkova A, Faldynova M, Rychlik I. Composition of Gut Microbiota Influences Resistance of Newly Hatched Chickens to Salmonella Enteritidis Infection. Front Microbiol 2016; 7:957. [PMID: 27379083 PMCID: PMC4911395 DOI: 10.3389/fmicb.2016.00957] [Citation(s) in RCA: 51] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2016] [Accepted: 06/02/2016] [Indexed: 12/02/2022] Open
Abstract
Since poultry is a very common source of non-typhoid Salmonella for humans, different interventions aimed at decreasing the prevalence of Salmonella in chickens are understood as an effective measure for decreasing the incidence of human salmonellosis. One such intervention is the use of probiotic or competitive exclusion products. In this study we tested whether microbiota from donor hens of different age will equally protect chickens against Salmonella Enteritidis infection. Newly hatched chickens were therefore orally inoculated with cecal extracts from 1-, 3-, 16-, 28-, and 42-week-old donors and 7 days later, the chickens were infected with S. Enteritidis. The experiment was terminated 4 days later. In the second experiment, groups of newly hatched chickens were inoculated with cecal extracts of 35-week-old hens either on day 1 of life followed by S. Enteritidis infection on day 2 or were infected with S. Enteritidis infection on day 1 followed by therapeutic administration of the cecal extract on day 2 or were inoculated on day 1 of life with a mixture of the cecal extract and S. Enteritidis. This experiment was terminated when the chickens were 5 days old. Both Salmonella culture and chicken gene expression confirmed that inoculation of newly hatched chickens with microbiota from 3-week-old or older chickens protected them against S. Enteritidis challenge. On the other hand, microbiota from 1-week-old donors failed to protect chickens against S. Enteritidis challenge. Microbiota from 35-week-old hens protected chickens even 24 h after administration. However, simultaneous or therapeutic microbiota administration failed to protect chickens against S. Enteritidis infection. Gut microbiota can be used as a preventive measure against S. Enteritidis infection but its composition and early administration is critical for its efficacy.
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90
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Li L, Chesson P. The Effects of Dynamical Rates on Species Coexistence in a Variable Environment: The Paradox of the Plankton Revisited. Am Nat 2016; 188:E46-58. [PMID: 27420794 DOI: 10.1086/687111] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
Hutchinson's famous hypothesis for the "paradox of the plankton" has been widely accepted, but critical aspects have remained unchallenged. Hutchinson argued that environmental fluctuations would promote coexistence when the timescale for environmental change is comparable to the timescale for competitive exclusion. Using a consumer-resource model, we do find that timescales of processes are important. However, it is not the time to exclusion that must be compared with the time for environmental change but the time for resource depletion. Fast resource depletion, when resource consumption is favored for different species at different times, strongly promotes coexistence. The time for exclusion is independent of the rate of resource depletion. Therefore, the widely believed predictions of Hutchinson are misleading. Fast resource depletion, as determined by environmental conditions, ensures strong coupling of environmental processes and competition, which leads to enhancement over time of intraspecific competition relative to interspecific competition as environmental shifts favor different species at different times. This critical coupling is measured by the covariance between environment and competition. Changes in this quantity as densities change determine the stability of coexistence and provide the key to rigorous analysis, both theoretically and empirically, of coexistence in a variable environment. These ideas apply broadly to diversity maintenance in variable environments whether the issue is species diversity or genetic diversity and competition or apparent competition.
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91
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Loranger J, Blonder B, Garnier É, Shipley B, Vile D, Violle C. Occupancy and overlap in trait space along a successional gradient in Mediterranean old fields. AMERICAN JOURNAL OF BOTANY 2016; 103:1050-1060. [PMID: 27307209 DOI: 10.3732/ajb.1500483] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2015] [Accepted: 05/16/2016] [Indexed: 06/06/2023]
Abstract
PREMISE OF THE STUDY Secondary succession is a worldwide phenomenon affecting plant communities. Studying functional variation during succession aids in understanding the mechanisms through which environmental shifts drive succession. We investigated changes in the functional space occupied by herbaceous communities during succession. Furthermore, since different traits are differently affected by environmental conditions, we asked how considering different sets of plant traits impacts those changes. METHODS Using a chronosequence of Mediterranean old fields (2-42 yr after abandonment), we analyzed shifts of the occupied functional space during succession, how the volume of occupied functional space varies compared with null expectations, and the functional overlap between communities of different successional status. We repeated these analyses considering (1) the leaf-height-seed functional dimensions separately and together and (2) different sets of traits representing those dimensions. KEY RESULTS From early to late succession, a shift toward nutrient conservative-light competitive species occurred. Functional strategies of mid-successional communities appeared more diverse than expected by chance and less diverse than expected for early and late communities. Early and middle stages overlapped the most. These patterns were generally robust to the choice of functional axes, though important trait-specific exceptions occurred. CONCLUSIONS We showed evidence for a well-defined history of successive dominance of different assembly mechanisms along succession, resulting in a generally stronger functional diversification in mid-succession. We also demonstrated that different traits typically grouped under one functional dimension can substantially affect the results, discouraging the use of surrogate traits from the same dimension.
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Capitán JA, Cuenda S, Alonso D. How similar can co-occurring species be in the presence of competition and ecological drift? J R Soc Interface 2016; 12:0604. [PMID: 26269234 DOI: 10.1098/rsif.2015.0604] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
If two species live on a single resource, the one with a slight advantage will out-compete the other: complete competitors cannot coexist. This is known as the competitive exclusion principle. If no extinction occurs, it is because evolutionary adaptation to slightly different niches takes place. Therefore, it is widely accepted that ecological communities are assembled by evolutionary differentiation and progressive adaptation of species to different niches. However, some ecologists have recently challenged this classic paradigm highlighting the importance of chance and stochasticity. Using a synthetic framework for community dynamics, here we show that, while deterministic descriptors predict coexistence, species similarity is limited in a more restrictive way in the presence of stochasticity. We analyse the stochastic extinction phenomenon, showing that extinction occurs as competitive overlap increases above a certain threshold well below its deterministic counterpart. We also prove that the extinction threshold cannot be ascribed only to demographic fluctuations around small population sizes. The more restrictive limit to species similarity is, therefore, a consequence of the complex interplay between competitive interactions and ecological drift. As a practical implication, we show that the existence of a stochastic limit to similarity has important consequences in the recovery of fragmented habitats.
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93
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Schneitz C, Hakkinen M. The efficacy of a commercial competitive exclusion product on Campylobacter colonization in broiler chickens in a 5-week pilot-scale study. Poult Sci 2016; 95:1125-8. [PMID: 26944963 PMCID: PMC4957530 DOI: 10.3382/ps/pew020] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2015] [Accepted: 11/30/2015] [Indexed: 11/21/2022] Open
Abstract
The efficacy of the commercial competitive exclusion product Broilact against Campylobacter jejuni was evaluated in broiler chickens in a 5-week pilot-scale study. Newly-hatched broiler chicks were brought from a commercial hatchery. After arrival 50 seeder chicks were challenged orally with approximately 10(3) cfu of C. jejuni, wing marked, and placed back in a delivery box and moved to a separate room. The rest of the chicks (contact chicks) were placed in floor pens, 100 chicks per pen. Birds in two pens were treated orally on the day of hatch with the commercial competitive exclusion (CE) product Broilact, and three pens were left untreated. The following day 10 seeder chicks were introduced into the Broilact treated and untreated control pens. One pen was left both untreated and unchallenged (0-control). Each week the ceca of 10 contact chicks and one seeder chick were examined quantitatively for Campylobacter The treatment prevented or significantly reduced the colonization of the challenge organism in the ceca during the two first weeks; the percentage of colonized birds being 0% after the first week and 30% after the second week in the Broilact treated groups but was 100% in the control groups the entire 5-week rearing period. During the third rearing week the proportion of Campylobacter positive birds started to increase in the treated pens, being 80% after the third week and 95 and 90% after the fourth and fifth rearing weeks, respectively. Similarly the average count of Campylobacter in the cecal contents of the Broilact treated chicks started to increase, the difference between the treated and control chicks being 1.4 logs at the end of the rearing period. Although the protective effect was temporary and occurred only during the first two weeks of the rearing period, the results of this study support the earlier observations that CE flora designed to protect chicks from Salmonella may also reduce Campylobacter colonization of broiler chickens.
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Shimura Y, Shoji N, Tanikawa T, Obayashi T, Honda J, Tanaka M, Sasaki Y, Fukushima J, Inamoto T. Nurmi-type Culture Prepared using Culture Media without l-Cysteine Enhances Salmonella Exclusion in Hatched Layer Chicks. J Poult Sci 2016; 53:165-172. [PMID: 32908380 PMCID: PMC7477276 DOI: 10.2141/jpsa.0150101] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2015] [Accepted: 11/18/2015] [Indexed: 11/21/2022] Open
Abstract
To determine the influence of media composition on Salmonella exclusion of Nurmi-type cultures, two and four types of cultures in the first and second trial, respectively, were prepared from the cecal contents of conventional laying hens, and Salmonella exclusion was assessed in newly hatched chicks. In the first trial, modified Viande Levure (VL) broth or nutrient broth (NB) were used to prepare Nurmi-type cultures (N-VL and N-NB), which were administered to the newly hatched chicks. Twenty-four hours later, the chicks were challenged with Salmonella enterica Typhimurium EF85-9 (ST). ST recoveries (log10 colony forming units/g of cecal contents) from the N-VL-, N-NB-, and control-treated groups 5 days after the challenge were 7.6±0.6, 0.9±1.9, and 7.7±0.4, respectively. The results suggested the influence of l-cysteine (Cys) present in the VL broth. Thus, we determined the effect of Cys in the second trial. We prepared two other cultures using VL broth without Cys (N-VL-Cys) and NB with Cys (NNB-Cys). ST recoveries from the cecal contents of the N-VL-, N-VL-Cys-, and control-treated groups were 6.3±0.9, 2.1±2.5, and 9.2±0.8, respectively. ST was not recovered from the N-NB- and N-NB-Cys-treated groups. To identify bacteria with Salmonella exclusion activity, we isolated 41 bacterial strains from the ceca of N-NB-treated chicks without Salmonella challenge. Most isolates were identified as Enterococcus faecalis or E. mundtii based on 16S rRNA gene sequencing, and only four cultures excluded Salmonella. Therefore, VL broth containing Cys was not always required for preparing Nurmi-type cultures. The use of media prepared with Cys at the lowest possible concentration or without Cys would promote to enhance Salmonella exclusion from Nurmi-type cultures.
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95
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Macagno ALM, Moczek AP, Pizzo A. Rapid Divergence of Nesting Depth and Digging Appendages among Tunneling Dung Beetle Populations and Species. Am Nat 2016; 187:E143-51. [PMID: 27105002 DOI: 10.1086/685776] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
Many dung beetle communities are characterized by species that share very similar morphological, ecological, and behavioral traits and requirements yet appear to be stably maintained. Here, we document that the morphologically nearly indistinguishable, sympatric, and syntopic tunneling sister species Onthophagus taurus and Onthophagus illyricus may be avoiding competitive exclusion by nesting at remarkably different soil depths. Intriguingly, we also find rapid divergence in preferred nesting depth across native and recently established O. taurus populations. Furthermore, geometric morphometric analyses reveal that both inter- and intraspecific divergences in nesting depth are paralleled by similar changes in the shape of the primary digging appendages, the fore tibiae. Collectively, our results identify preferred nesting depth and tibial shape as surprisingly evolutionarily labile and with the potential to ease interspecific competition and/or to facilitate adaptation to local climatic conditions.
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96
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Abstract
The large number of intestinal microorganisms, which exceeds the total number of human cells by ten folds, alludes to a significant contribution to human health. This is vivid in enteric and some systemic diseases emanating from disruption of the microbiota. As life style keeps shifting towards disruption of the microbiota in most societies worldwide, interest in the contribution of the microbiota to gut health has grown enormously. Many studies have been conducted to elucidate the exact contribution of the microbiota to human health. The knowledge gained from these studies indicates that the microbiota interacts with the intestinal milieu to maintain gut health. In this review, the crosstalk of microbiota with the intestinal physicochemical barrier pivotal to the gut innate immunity is highlighted. In particular, the review focuses on the role of the microbiota on competitive exclusion of pathogens, intestinal pH, epithelial mechanical barrier integrity, apical actin cytoskeleton, antimicrobial peptides, and the mucus layer. Understanding this microbe-host relationship will provide useful insight into overcoming some diseases related to the disruption of the host microbiota.
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97
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Kennedy JP, Pil MW, Proffitt CE, Boeger WA, Stanford AM, Devlin DJ. Postglacial expansion pathways of red mangrove, Rhizophora mangle, in the Caribbean Basin and Florida. AMERICAN JOURNAL OF BOTANY 2016; 103:260-276. [PMID: 26838364 DOI: 10.3732/ajb.1500183] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2015] [Accepted: 12/04/2015] [Indexed: 06/05/2023]
Abstract
PREMISE OF THE STUDY The Last Glacial Maximum (LGM) was a period of massive range contraction. Post-LGM, water-dispersed coastal species, including the red mangrove (Rhizophora mangle), expanded poleward as propagules were transported by ocean currents. We assessed postglacial marine expansion pathways for R. mangle within the Caribbean Basin and Florida. METHODS Six microsatellite loci were used to genotype 237 individuals from nine R. mangle populations in the Caribbean, Florida, and Northwest Africa. We evaluated genetic variation, population structure, gene flow along alternative post-LGM expansion pathways to Florida, and potential long-distance dispersal (LDD) from West Africa to Caribbean islands. KEY RESULTS These R. mangle populations had substantial genetic structure (FST = 0.37, P < 0.0001) with three discrete population clusters (Caribbean mainland, Caribbean islands, and Florida). Genetic connectivity along the mainland pathway (Caribbean mainland to Florida) vs. limited gene dispersal along the Antilles Island pathway (Caribbean islands to Florida) supported Florida recolonization from Caribbean mainland sources. Genetic similarity of Northwest Africa and two Caribbean islands provided evidence for trans-Atlantic LDD. We did not find a pattern of decreasing genetic diversity with latitude. CONCLUSIONS We outline a complex expansion history for R. mangle, with discrete pathways of recolonization for Florida and Caribbean islands. Contrary to expectation, connectivity to putative Caribbean mainland refugial populations via ocean currents, and not latitude, appears to dictate genetic diversity within Caribbean island and Florida R. mangle. These findings provide a framework for further investigation of additional water-dispersed neotropical species, and insights for management initiatives.
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Lindsay RJ, Kershaw MJ, Pawlowska BJ, Talbot NJ, Gudelj I. Harbouring public good mutants within a pathogen population can increase both fitness and virulence. eLife 2016; 5:e18678. [PMID: 28029337 PMCID: PMC5193496 DOI: 10.7554/elife.18678] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2016] [Accepted: 11/14/2016] [Indexed: 01/27/2023] Open
Abstract
Existing theory, empirical, clinical and field research all predict that reducing the virulence of individuals within a pathogen population will reduce the overall virulence, rendering disease less severe. Here, we show that this seemingly successful disease management strategy can fail with devastating consequences for infected hosts. We deploy cooperation theory and a novel synthetic system involving the rice blast fungus Magnaporthe oryzae. In vivo infections of rice demonstrate that M. oryzae virulence is enhanced, quite paradoxically, when a public good mutant is present in a population of high-virulence pathogens. We reason that during infection, the fungus engages in multiple cooperative acts to exploit host resources. We establish a multi-trait cooperation model which suggests that the observed failure of the virulence reduction strategy is caused by the interference between different social traits. Multi-trait cooperative interactions are widespread, so we caution against the indiscriminant application of anti-virulence therapy as a disease-management strategy.
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van Zyl WF, Deane SM, Dicks LMT. Enterococcus mundtii ST4SA and Lactobacillus plantarum 423 excludes Listeria monocytogenes from the GIT, as shown by bioluminescent studies in mice. Benef Microbes 2015; 7:227-35. [PMID: 26689230 DOI: 10.3920/bm2015.0082] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
Listeria monocytogenes is an opportunistic food-borne pathogen and is life-threatening to individuals with a weakened immune system. The aim of this study was to determine if Lactobacillus plantarum 423 and Enterococcus mundtii ST4SA could prevent colonisation of L. monocytogenes in the gastro-intestinal tract (GIT). Mice were gavaged with L. plantarum 423, E. mundtii ST4SA, and a combination of the two strains, for 6 consecutive days and orally infected with a bioluminescent strain of L. monocytogenes (strain EGDe) on the last day of treatment. 30 min after infection, high cell numbers of L. plantarum 423, E. mundtii ST4SA and L. monocytogenes EGDe were isolated from faeces. L. monocytogenes EGDe cells were absent from the small intestine of L. plantarum 423-treated mice 4 h after infection and from the large intestine 2 h later. No bioluminescent, and thus metabolically active, cells of L. monocytogenes EGDe were recorded in the GIT of mice treated with E. mundtii ST4SA, suggesting that their growth was repressed. L. plantarum 423 and E. mundtii ST4SA colonised the colon the strongest. These strains may be considered for the competitive exclusion of L. monocytogenes from the GIT.
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100
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Caly DL, D'Inca R, Auclair E, Drider D. Alternatives to Antibiotics to Prevent Necrotic Enteritis in Broiler Chickens: A Microbiologist's Perspective. Front Microbiol 2015; 6:1336. [PMID: 26648920 PMCID: PMC4664614 DOI: 10.3389/fmicb.2015.01336] [Citation(s) in RCA: 143] [Impact Index Per Article: 15.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2015] [Accepted: 11/16/2015] [Indexed: 12/20/2022] Open
Abstract
Since the 2006 European ban on the use of antibiotics as growth promoters in animal feed, numerous studies have been published describing alternative strategies to prevent diseases in animals. A particular focus has been on prevention of necrotic enteritis in poultry caused by Clostridium perfringens by the use of microbes or microbe-derived products. Microbes produce a plethora of molecules with antimicrobial properties and they can also have beneficial effects through interactions with their host. Here we review recent developments in novel preventive treatments against C. perfringens-induced necrotic enteritis in broiler chickens that employ yeasts, bacteria and bacteriophages or secondary metabolites and other microbial products in disease control.
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