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76
Tang X, Liu H, Chen Q, Wang X, Xiong Y, Zhao P. Genome-Wide Identification, Characterization and Expression Analysis of the Solute Carrier 6 Gene Family in Silkworm (Bombyx mori). Int J Mol Sci 2016;17:ijms17101675. [PMID: 27706106 PMCID: PMC5085708 DOI: 10.3390/ijms17101675] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2016] [Accepted: 09/26/2016] [Indexed: 11/16/2022]  Open
77
Zhang X, Li Y, Wang J, Zhang T, Li T, Dong W, Ma E, Zhang J. Identification and characteristic analysis of the catalase gene from Locusta migratoria. PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY 2016;132:125-131. [PMID: 27521923 DOI: 10.1016/j.pestbp.2016.03.010] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2015] [Revised: 02/23/2016] [Accepted: 03/29/2016] [Indexed: 06/06/2023]
78
Wang X, Werren JH, Clark AG. Allele-Specific Transcriptome and Methylome Analysis Reveals Stable Inheritance and Cis-Regulation of DNA Methylation in Nasonia. PLoS Biol 2016;14:e1002500. [PMID: 27380029 PMCID: PMC4933354 DOI: 10.1371/journal.pbio.1002500] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2016] [Accepted: 06/03/2016] [Indexed: 11/18/2022]  Open
79
Pettie KP, Dresch JM, Drewell RA. Spatial distribution of predicted transcription factor binding sites in Drosophila ChIP peaks. Mech Dev 2016;141:51-61. [PMID: 27264535 DOI: 10.1016/j.mod.2016.06.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2015] [Revised: 04/24/2016] [Accepted: 06/01/2016] [Indexed: 11/19/2022]
80
Palazzo A, Lovero D, D’Addabbo P, Caizzi R, Marsano RM. Identification of Bari Transposons in 23 Sequenced Drosophila Genomes Reveals Novel Structural Variants, MITEs and Horizontal Transfer. PLoS One 2016;11:e0156014. [PMID: 27213270 PMCID: PMC4877112 DOI: 10.1371/journal.pone.0156014] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2015] [Accepted: 05/09/2016] [Indexed: 11/18/2022]  Open
81
Yeates DK, Meusemann K, Trautwein M, Wiegmann B, Zwick A. Power, resolution and bias: recent advances in insect phylogeny driven by the genomic revolution. CURRENT OPINION IN INSECT SCIENCE 2016;13:16-23. [PMID: 27436549 DOI: 10.1016/j.cois.2015.10.007] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2015] [Revised: 10/08/2015] [Accepted: 10/18/2015] [Indexed: 06/06/2023]
82
Poelchau MF, Coates BS, Childers CP, Peréz de León AA, Evans JD, Hackett K, Shoemaker D. Agricultural applications of insect ecological genomics. CURRENT OPINION IN INSECT SCIENCE 2016;13:61-69. [PMID: 27436554 DOI: 10.1016/j.cois.2015.12.002] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2015] [Revised: 12/07/2015] [Accepted: 12/13/2015] [Indexed: 06/06/2023]
83
Kapheim KM. Genomic sources of phenotypic novelty in the evolution of eusociality in insects. CURRENT OPINION IN INSECT SCIENCE 2016;13:24-32. [PMID: 27436550 DOI: 10.1016/j.cois.2015.10.009] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2015] [Revised: 10/13/2015] [Accepted: 10/28/2015] [Indexed: 06/06/2023]
84
Edwards O. Editorial overview: Insect genomics-shifting the focus of genomics from the lab to the field. CURRENT OPINION IN INSECT SCIENCE 2016;13:v-vi. [PMID: 27436560 DOI: 10.1016/j.cois.2015.12.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
85
Reid W, O'Brochta DA. Applications of genome editing in insects. CURRENT OPINION IN INSECT SCIENCE 2016;13:43-54. [PMID: 27436552 DOI: 10.1016/j.cois.2015.11.001] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2015] [Revised: 09/23/2015] [Accepted: 11/01/2015] [Indexed: 05/14/2023]
86
Ma L, Dong WW, Jiang GF, Wang X. The Complete Mitochondrial Genome of Brachmia macroscopa (Lepidoptera: Gelechiidae) and Its Related Phylogenetic Analysis. JOURNAL OF INSECT SCIENCE (ONLINE) 2016;16:9. [PMID: 26810560 PMCID: PMC4725263 DOI: 10.1093/jisesa/iev157] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/24/2015] [Accepted: 12/11/2015] [Indexed: 06/05/2023]
87
Wu Y, Cheng T, Liu C, Liu D, Zhang Q, Long R, Zhao P, Xia Q. Systematic Identification and Characterization of Long Non-Coding RNAs in the Silkworm, Bombyx mori. PLoS One 2016;11:e0147147. [PMID: 26771876 PMCID: PMC4714849 DOI: 10.1371/journal.pone.0147147] [Citation(s) in RCA: 80] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2015] [Accepted: 11/22/2015] [Indexed: 02/04/2023]  Open
88
Liu J, Guo Y, Li C, Chen Y, Jiao R. Methods for TALEN-Mediated Genomic Manipulations in Drosophila. Methods Mol Biol 2016;1338:179-190. [PMID: 26443222 DOI: 10.1007/978-1-4939-2932-0_14] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
89
Wang ZL, Li C, Fang WY, Yu XP. The Complete Mitochondrial Genome of two Tetragnatha Spiders (Araneae: Tetragnathidae): Severe Truncation of tRNAs and Novel Gene Rearrangements in Araneae. Int J Biol Sci 2016;12:109-19. [PMID: 26722222 PMCID: PMC4679403 DOI: 10.7150/ijbs.12358] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2015] [Accepted: 10/26/2015] [Indexed: 11/30/2022]  Open
90
Donnelly MJ, Isaacs AT, Weetman D. Identification, Validation, and Application of Molecular Diagnostics for Insecticide Resistance in Malaria Vectors. Trends Parasitol 2015;32:197-206. [PMID: 26750864 DOI: 10.1016/j.pt.2015.12.001] [Citation(s) in RCA: 71] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2015] [Revised: 11/27/2015] [Accepted: 12/02/2015] [Indexed: 12/20/2022]
91
Richart CH, Hayashi CY, Hedin M. Phylogenomic analyses resolve an ancient trichotomy at the base of Ischyropsalidoidea (Arachnida, Opiliones) despite high levels of gene tree conflict and unequal minority resolution frequencies. Mol Phylogenet Evol 2015;95:171-82. [PMID: 26691642 DOI: 10.1016/j.ympev.2015.11.010] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2015] [Revised: 09/16/2015] [Accepted: 11/13/2015] [Indexed: 11/19/2022]
92
Zhang NX, Yu G, Li TJ, He QY, Zhou Y, Si FL, Ren S, Chen B. The Complete Mitochondrial Genome of Delia antiqua and Its Implications in Dipteran Phylogenetics. PLoS One 2015;10:e0139736. [PMID: 26427045 PMCID: PMC4591329 DOI: 10.1371/journal.pone.0139736] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2015] [Accepted: 09/15/2015] [Indexed: 11/28/2022]  Open
93
Chang H, Cheng T, Wu Y, Hu W, Long R, Liu C, Zhao P, Xia Q. Transcriptomic Analysis of the Anterior Silk Gland in the Domestic Silkworm (Bombyx mori) - Insight into the Mechanism of Silk Formation and Spinning. PLoS One 2015;10:e0139424. [PMID: 26418001 PMCID: PMC4587926 DOI: 10.1371/journal.pone.0139424] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2015] [Accepted: 09/14/2015] [Indexed: 01/08/2023]  Open
94
Atray I, Bentur JS, Nair S. The Asian Rice Gall Midge (Orseolia oryzae) Mitogenome Has Evolved Novel Gene Boundaries and Tandem Repeats That Distinguish Its Biotypes. PLoS One 2015. [PMID: 26226163 PMCID: PMC4520695 DOI: 10.1371/journal.pone.0134625] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]  Open
95
Yuan ML, Zhang QL, Guo ZL, Wang J, Shen YY. Comparative mitogenomic analysis of the superfamily Pentatomoidea (Insecta: Hemiptera: Heteroptera) and phylogenetic implications. BMC Genomics 2015;16:460. [PMID: 26076960 PMCID: PMC4469028 DOI: 10.1186/s12864-015-1679-x] [Citation(s) in RCA: 61] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2014] [Accepted: 06/01/2015] [Indexed: 11/23/2022]  Open
96
Kapheim KM, Pan H, Li C, Salzberg SL, Puiu D, Magoc T, Robertson HM, Hudson ME, Venkat A, Fischman BJ, Hernandez A, Yandell M, Ence D, Holt C, Yocum GD, Kemp WP, Bosch J, Waterhouse RM, Zdobnov EM, Stolle E, Kraus FB, Helbing S, Moritz RFA, Glastad KM, Hunt BG, Goodisman MAD, Hauser F, Grimmelikhuijzen CJP, Pinheiro DG, Nunes FMF, Soares MPM, Tanaka ÉD, Simões ZLP, Hartfelder K, Evans JD, Barribeau SM, Johnson RM, Massey JH, Southey BR, Hasselmann M, Hamacher D, Biewer M, Kent CF, Zayed A, Blatti C, Sinha S, Johnston JS, Hanrahan SJ, Kocher SD, Wang J, Robinson GE, Zhang G. Social evolution. Genomic signatures of evolutionary transitions from solitary to group living. Science 2015;348:1139-43. [PMID: 25977371 PMCID: PMC5471836 DOI: 10.1126/science.aaa4788] [Citation(s) in RCA: 235] [Impact Index Per Article: 26.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2014] [Accepted: 05/06/2015] [Indexed: 12/14/2022]
97
Aldrich JC, Maggert KA. Transgenerational inheritance of diet-induced genome rearrangements in Drosophila. PLoS Genet 2015;11:e1005148. [PMID: 25885886 PMCID: PMC4401788 DOI: 10.1371/journal.pgen.1005148] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2014] [Accepted: 03/17/2015] [Indexed: 12/17/2022]  Open
98
Hutchison AL, Maienschein-Cline M, Chiang AH, Tabei SMA, Gudjonson H, Bahroos N, Allada R, Dinner AR. Improved statistical methods enable greater sensitivity in rhythm detection for genome-wide data. PLoS Comput Biol 2015;11:e1004094. [PMID: 25793520 PMCID: PMC4368642 DOI: 10.1371/journal.pcbi.1004094] [Citation(s) in RCA: 60] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2014] [Accepted: 12/16/2014] [Indexed: 11/18/2022]  Open
99
Harrup LE, Bellis GA, Balenghien T, Garros C. Culicoides Latreille (Diptera: Ceratopogonidae) taxonomy: current challenges and future directions. INFECTION, GENETICS AND EVOLUTION : JOURNAL OF MOLECULAR EPIDEMIOLOGY AND EVOLUTIONARY GENETICS IN INFECTIOUS DISEASES 2015;30:249-266. [PMID: 25535946 PMCID: PMC4330985 DOI: 10.1016/j.meegid.2014.12.018] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/12/2014] [Revised: 12/12/2014] [Accepted: 12/13/2014] [Indexed: 11/23/2022]
100
Pasquier C, Clément M, Dombrovsky A, Penaud S, Da Rocha M, Rancurel C, Ledger N, Capovilla M, Robichon A. Environmentally selected aphid variants in clonality context display differential patterns of methylation in the genome. PLoS One 2014;9:e115022. [PMID: 25551225 PMCID: PMC4281257 DOI: 10.1371/journal.pone.0115022] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2014] [Accepted: 11/17/2014] [Indexed: 11/18/2022]  Open
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