1101
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Killick-Kendrick R, Tang Y, Killick-Kendrick M. Phlebotomine sandflies of Kenya (Diptera: Psychodidae). IV. The armature in the genital atrium of female Larroussius as a means of identification. ANNALS OF TROPICAL MEDICINE AND PARASITOLOGY 1994; 88:433-7. [PMID: 7979630 DOI: 10.1080/00034983.1994.11812885] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Descriptions are given of armatures in the genital atria of the six known Kenyan species of phlebotomine sandflies of the subgenus, Larroussius, namely Phlebotomus aculeatus, P. elgonensis, P. guggisbergi, P. longipes, P. orientalis and P. pedifer. Phlebotomus aculeatus, P. longipes and P. pedifer can be recognized by the shapes of their armatures. Differences in the length and arrangement of the spines in the armature of P. elgonensis and P. longipes are diagnostic features. The distinguishing feature of P. guggisbergi is a wide variation in spine thickness. The most notable feature of P. orientalis is the angle at which the spines lie. The appearance of the base of the spermathecal duct remains the method of choice for the identification of all six but, if this feature is not well displayed in dissected females, they can be distinguished by the armature. It is suggested that descriptions of new species should include an illustration of the armature in the genital atrium.
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1102
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Li Y, Huang Q, Zhang S, Liu S, Chi C, Tang Y. Studies on an artificial trypsin inhibitor peptide derived from the mung bean trypsin inhibitor: chemical synthesis, refolding, and crystallographic analysis of its complex with trypsin. J Biochem 1994; 116:18-25. [PMID: 7798176 DOI: 10.1093/oxfordjournals.jbchem.a124491] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023] Open
Abstract
The active fragment with Lys at the reactive site of mung bean trypsin inhibitor (MBILF) is composed of two peptide chains, A1 of 26 residues and A2 of 9 residues linked via two disulfide bonds. In the present study, a peptide of 22 residue comprising the sequence of chain A1 from position 3 to 24 was synthesized by the solid-phase method. This synthetic peptide with six Cys residues contains a reactive site at position Lys11I-Ser12I (I denotes an inhibitor residue). Air oxidation and HPLC purification resulted in two antitrypsin active components, SPC1 and SPC2. Neither SPC1 nor SPC2 can stoichiometrically inhibit trypsin. The Ki values of SPC1 and SPC2 are 1.2 x 10(-7) and 4.0 x 10(-8) M, respectively. The complexes of SPC1 and SPC2 with bovine beta-trypsin (BTRY) were crystallized by ammonium sulphate precipitation at pH 6.4 and 6.0, respectively. The two crystals have the same crystal form with space group P2(1)2(1)2(1) and cell dimension of a = 63.2(2) A, b = 63.5(6) A, and c = 69.8(4) A. The crystal structure of one complex, SPC1-BTRY, was determined and refined at 2.2 A resolution to a final R-value of 19.2%. From the resulting electron density map, 9 residues of SPC1, from position 9I to 17I, were identified clearly and three-dimension atomic model of the 9-residue reactive loop formed by a disulfide bridge, Cys9I-Cys17I, was built. No electron density corresponding to the other 13 residues was observed in the present map.(ABSTRACT TRUNCATED AT 250 WORDS)
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1103
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Sun SS, Yuan SQ, Tang Y. [Effects of dingduwan on electric activities of gastrointestinal smooth muscle and effect of gastrointestinal motility]. ZHONGGUO ZHONG XI YI JIE HE ZA ZHI ZHONGGUO ZHONGXIYI JIEHE ZAZHI = CHINESE JOURNAL OF INTEGRATED TRADITIONAL AND WESTERN MEDICINE 1994; 14:424-6. [PMID: 7950231] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Dingduwan (DDW) is a Chinese herbal medicine. Method of modified synchronous recording was used to study the electric activities of gastrointestinal (GI) smooth muscle and the effect of GI motility treated by DDW. A dosage of 3.5 g/kg for ingestion in rats markedly increased the average amplitude of GI slow wave, the total amplitude of GI motion, the rate of GI slow wave and intestinal motion (P < 0.05), but it had no significant effects on the frequency of gastroelectric slow wave and gastric motility (P < 0.05). DDW in the dosage of 5.2 g/kg for ingestion markedly promoted the recovery of intestinal intussusception in mice (P > 0.05). The results showed that DDW markedly increased the intestinal electricity and motility more than that of stomach.
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1104
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Liu PM, Zhang XM, Wu W, Li JM, Tang Y. Comparison of cardiac electrophysiologic effects of experimental hypothyroidism and chronic oral amiodarone administration in dogs. Chin Med J (Engl) 1994; 107:375-9. [PMID: 7924581] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023] Open
Abstract
A comparative study on ventricular electrophysiologic effects of experimental hypothyroidism and chronic oral amiodarone administration was made in canine models, with the application of electrical stimulation and monophasic action potential recording. The results showed similar effects possessed by hypothyroidism and amiodarone, which included prolongations in ventricular repolarization and refractoriness, an increase in ventricular fibrillation threshold, and a decrease in the incidence of reperfusion ventricular fibrillation. The differences were that hypothyroidism primarily lengthened phase 2 repolarization and had no effects on intraventricular conduction time, whereas amiodarone lengthened both phase 2 and phase 3 repolarization and suppressed myocardial conduction velocity.
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1105
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Makino M, Tang Y, Murphy DB, Fredrickson TN, Okada Y, Fujiwara M, Chattopadhyay SK, Mizuochi T, Komuro K, Morse HC. Influence of H-2 class II antigens on the development of murine AIDS. JOURNAL OF IMMUNOLOGY (BALTIMORE, MD. : 1950) 1994; 152:4157-64. [PMID: 8144977] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
Inbred strains of mice differ markedly in their relative susceptibility to the development of lymphoproliferation and immunodeficiency, a syndrome termed mouse AIDS (MAIDS), after infection with the LP-BM5 mixture of murine leukemia viruses (MuLV). The etiologic virus in this mixture is replication defective (BM5def) and encodes only a variant gag protein. Genetic determinants of resistance and susceptibility to induction of MAIDS reside both within and outside the MHC. In strains with C57BL background genes, the MHC haplotypes associated with resistance to disease include d and a, whereas haplotypes b, s, and q are associated with sensitivity. Previous studies showed that MHC class I genes (H-2Dd, H-2Ld) mapping in the D end of H-2 and other genes mapping proximal to the D end determine resistance to MAIDS. This paper examines the nature of these non-D end MHC genes using assays of MHC recombinant and transgenic mice. We demonstrate that expression of E alpha d confers significant resistance to MAIDS, even in mice that do not express H-2Dd/H-2Ld. Unexpectedly, we found that E alpha polymorphisms can significantly influence resistance, with H-2b mice bearing E alpha d as a transgene having greater resistance to MAIDS than mice bearing an E alpha k transgene. E alpha d-mediated resistance to MAIDS was associated with decreased levels of the BM5def genome in splenic DNA, suggesting that E alpha genes exert their effect by enhancing antiviral activity.
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1106
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Makino M, Tang Y, Murphy DB, Fredrickson TN, Okada Y, Fujiwara M, Chattopadhyay SK, Mizuochi T, Komuro K, Morse HC. Influence of H-2 class II antigens on the development of murine AIDS. THE JOURNAL OF IMMUNOLOGY 1994. [DOI: 10.4049/jimmunol.152.8.4157] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Abstract
Inbred strains of mice differ markedly in their relative susceptibility to the development of lymphoproliferation and immunodeficiency, a syndrome termed mouse AIDS (MAIDS), after infection with the LP-BM5 mixture of murine leukemia viruses (MuLV). The etiologic virus in this mixture is replication defective (BM5def) and encodes only a variant gag protein. Genetic determinants of resistance and susceptibility to induction of MAIDS reside both within and outside the MHC. In strains with C57BL background genes, the MHC haplotypes associated with resistance to disease include d and a, whereas haplotypes b, s, and q are associated with sensitivity. Previous studies showed that MHC class I genes (H-2Dd, H-2Ld) mapping in the D end of H-2 and other genes mapping proximal to the D end determine resistance to MAIDS. This paper examines the nature of these non-D end MHC genes using assays of MHC recombinant and transgenic mice. We demonstrate that expression of E alpha d confers significant resistance to MAIDS, even in mice that do not express H-2Dd/H-2Ld. Unexpectedly, we found that E alpha polymorphisms can significantly influence resistance, with H-2b mice bearing E alpha d as a transgene having greater resistance to MAIDS than mice bearing an E alpha k transgene. E alpha d-mediated resistance to MAIDS was associated with decreased levels of the BM5def genome in splenic DNA, suggesting that E alpha genes exert their effect by enhancing antiviral activity.
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1107
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Warner-Schmid D, Tang Y, Armstrong DW. Removal of Organic Compounds from Water via Adsorption Onto Polymethyl-Hydrosiloxane Pentenyl-β-Cyclodextrin. ACTA ACUST UNITED AC 1994. [DOI: 10.1080/10826079408013453] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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1108
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Killick-Kendrick R, Tang Y, Killick-Kendrick M, Johnson RN, Ngumbi PM, Sang DK, Lawyer PG. Phlebotomine sandflies of Kenya (Diptera: Psychodidae). III. The identification and distribution of species of the subgenus Larroussius. ANNALS OF TROPICAL MEDICINE AND PARASITOLOGY 1994; 88:183-96. [PMID: 8067814 DOI: 10.1080/00034983.1994.11812857] [Citation(s) in RCA: 27] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
The six species of phlebotomine sandflies of the subgenus Larroussius recorded in Kenya are Phlebotomus aculeatus, P. elgonensis, P. guggisbergi, P. longipes, P. orientalis and P. pedifer. Five are proven vectors of leishmaniasis in that country or elsewhere. Males of all six can be identified by the morphology of the aedeagus or the number and position of the hairs on the inner surface of the coxite. Additional features separating some of the species are the sizes of the palpal and antennal segments. The females have usually been considered difficult or impossible to distinguish. A comparison of the base of the spermathecal ducts is made and it is shown that all six can be identified by this character alone. A map of Kenya is given, showing the presently known distribution of the six Larroussius species. Further surveys are necessary in parts of the country that have not been systematically surveyed.
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1109
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Abstract
A new model is proposed based on signal transduction via G proteins for adaptation of the signal relay process in the cellular slime mold Dictyostelium discoideum. The kinetic constants involved in the model are estimated from Dictyostelium discoideum and other systems. A qualitative analysis of the model shows how adaptation arises, and numerical computations show that the model agrees with observations in both perfusion and suspension experiments. Several experiments that can serve to test the model are suggested.
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1110
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Gloor P, Tang Y, Kostanska A, Hamielec A. Chemical modification of polyolefins by free radical mechanisms: a modelling and experimental study of simultaneous random scission, branching and crosslinking. POLYMER 1994. [DOI: 10.1016/0032-3861(94)90946-6] [Citation(s) in RCA: 76] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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1111
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Killick-Kendrick R, Killick-Kendrick M, Tang Y. Anthroponotic cutaneous leishmaniasis in Kabul, Afghanistan: the low susceptibility of Phlebotomus papatasi to Leishmania tropica. Trans R Soc Trop Med Hyg 1994; 88:252-3. [PMID: 8036692 DOI: 10.1016/0035-9203(94)90320-4] [Citation(s) in RCA: 26] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023] Open
Abstract
Females of a laboratory colony of Phlebotomus papatasi from Kabul were fed through a membrane on a high dose of amastigotes of Leishmania tropica from the same place. Less than one-third of the flies became infected and only 6% developed heavy infections of the stomodaeal valve. From these observations, and previous studies by other workers, it is concluded that P. papatasi probably plays little or no part in the transmission of anthroponotic cutaneous leishmaniasis in Kabul. As in Saudi Arabia and Morocco, the most likely vector in Afghanistan is P. sergenti.
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1112
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Tang Y, Taylor KT, Sobieski DA, Medved ES, Lipsky RH. Identification of a human CD36 isoform produced by exon skipping. Conservation of exon organization and pre-mRNA splicing patterns with a CD36 gene family member, CLA-1. J Biol Chem 1994; 269:6011-5. [PMID: 7509795] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023] Open
Abstract
During an examination of different cell types for CD36 mRNA splice variants, a partial cDNA from HEL cells was isolated and characterized. This CD36 cDNA had a 309-base pair deletion following the region encoding the first putative transmembrane domain of CD36. The open reading frame of the deleted CD36 cDNA was retained and was predicted to yield a protein lacking 103 amino acid residues. The presence of this variant was confirmed in RNA pools from placental tissue by a reverse transcriptase-coupled polymerase chain reaction assay. Comparison of the HEL CD36 cDNA with the genomic sequence revealed that the mRNA represented by this variant CD36 cDNA was produced by a pre-mRNA splicing reaction that excluded exons 4 and 5. Transient expression of the variant CD36 cDNA in COS-1 cells showed that CD36 immunoreactive protein was expressed on the cell surface but lacked an antigenic epitope defined by amino acid residues 41-143. This cell surface glycoprotein (M(r) approximately 57,000) was of identical molecular weight as a CD36 isoform observed on the surface of HEL cells. The exclusion of exons during CD36 pre-mRNA processing appears to be conserved within one other CD36 gene family member, CLA-1.
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1113
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Tang Y, Taylor K, Sobieski D, Medved E, Lipsky R. Identification of a human CD36 isoform produced by exon skipping. Conservation of exon organization and pre-mRNA splicing patterns with a CD36 gene family member, CLA-1. J Biol Chem 1994. [DOI: 10.1016/s0021-9258(17)37562-2] [Citation(s) in RCA: 28] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022] Open
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1114
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Xu K, Tang Y, Grifo JA, Rosenwaks Z, Cohen J. Primer extension preamplification for detection of multiple genetic loci from single human blastomeres. Hum Reprod 1993; 8:2206-10. [PMID: 8150925 DOI: 10.1093/oxfordjournals.humrep.a138004] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023] Open
Abstract
A new technology called primer extension preamplification (PEP), which has been applied to single spermatozoa, increases the amount of polymerase chain reaction (PCR) templates by amplifying DNA of the whole genome. The current investigation was aimed at applying PEP to single human blastomeres. Two blastomeres with nuclei from arrested embryos were selected for this study. Using three different PEP protocols (experiments I, II and III), DNA from single blastomeres was amplified using 15-base oligonucleotide random primers. The efficiency of the procedure was determined by further amplifications of aliquots of the PEP products with two specific sequences. Three aliquots from each PEP product were used as PCR templates for the human X chromosome (X) or the exon 10 of the cystic fibrosis gene (CF). PCR amplified products were analysed by gel electrophoresis. In experiment I, when X primers were used, positive signals were detected in all 10 embryos (100%), 90.0% (18/20) of the blastomeres, and in 80.0% (96/120) of the replicates. When CF primers were amplified, all embryos (100%, 10/10), 90.9% (18/20) of the blastomeres and 78.3% (47/60) of the replicates were positive. In experiment II, efficiency was significantly reduced when total time for the procedure was minimized from 8 h to 5 h and 45 min. Although the time was further reduced to 4 h and 40 min in experiment III, the efficiency remained the same as in experiment I when the volume of PEP was reduced from 60 microliters (experiments I and II) to 40 microliters. One out of 132 control replicates (0.8%) was contaminated.(ABSTRACT TRUNCATED AT 250 WORDS)
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1115
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Taylor KT, Tang Y, Sobieski DA, Lipsky RH. Characterization of two alternatively spliced 5'-untranslated exons of the human CD36 gene in different cell types. Gene 1993; 133:205-12. [PMID: 7693552 DOI: 10.1016/0378-1119(93)90639-k] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
We determined the nucleotide sequence of a 2.6-kb BamHI-EcoRI fragment from the 5'-end of the human gene encoding the cell adhesion receptor, CD36. This region contains the first coding exon, exon 3, as well as two non-coding exons, exons 2a and 2b, from the 5'-flanking region. Also present in the 5'-flanking region are two Alu repeats belonging to the Alu-Sa subfamily. When the determined genomic sequence was compared to a placental cDNA sequence [Oquendo et al., Cell 58 (1989) 95-101] and to a human erythroid leukemia (HEL) cell CD36 cDNA sequence (this report), we found that exons 2a and 2b do not occur within the same mRNA, suggesting that alternative splicing occurs within the 5'-untranslated region (UTR) of human CD36 pre-mRNA. These observations were confirmed by reverse transcriptase-coupled polymerase chain reaction (RT/PCR) assays using RNA from placental tissue, HEL cells and human platelets. Exon 2b encodes two alternative translation initiation codons which may render exon 2b-containing CD36 mRNA untranslatable. To test this hypothesis, we transfected COS-1 cells with an exon 2b-containing CD36 cDNA construct. Using anti-CD36 polyclonal antibody, we were able to detect an immunoreactive protein, consistent in size with the mature protein observed in transfected COS-1 cells. Therefore, exon 2b itself is insufficient to block translation of CD36 mRNA.
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1116
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Jin Y, Liu S, Li G, Tang Y, Chi Z. The crystal structure of the ternary complex of mung bean trypsin inhibitor with two porcine trypsin (PTRY-MBI-PTRY) at 2.8 Å resolution. Acta Crystallogr A 1993. [DOI: 10.1107/s0108767378096920] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
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1117
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Huang Q, Liu S, Tang Y, Jing S, Wang Y. Active center geometry and depurine mechanism studies of complexes of two ribosome-inactivating proteins. Acta Crystallogr A 1993. [DOI: 10.1107/s0108767378098207] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
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1118
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Tang Y, Lin CM, Chen TT, Kawauchi H, Dunham RA, Powers DA. Structure of the channel catfish (Ictalurus punctatus) growth hormone gene and its evolutionary implications. MOLECULAR MARINE BIOLOGY AND BIOTECHNOLOGY 1993; 2:198-206. [PMID: 8293072] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
A DNA fragment of 1.6 kilo base pairs (kb), encoding part of the channel catfish (Ictalurus punctatus) growth hormone (GH) gene, was generated by the polymerase chain reaction (PCR) using 2 degenerate synthetic oligonucleotides (30 and 33 mer) derived from the N- and C-terminal amino acid sequences of the catfish GH polypeptide as amplification primers and with catfish genomic DNA as a template. This DNA fragment was used as a probe for the isolation of a catfish GH gene from a genomic library constructed in a lambda phage cloning vector, lambda Dash II. Three positive clones were isolated, and their complete nucleotide sequences were determined. Nucleotide sequences from clones 1 and 3 were identical, whereas clone 2 had 2 base substitutions. The gene spans approximately 3 kb and is comprised of 5 exons and 4 introns. The initiation codon, the termination codon, and the canonical polyadenylation sequence were identified. The amino acid sequence deduced from the predicted coding region of the gene is in agreement with that of the native GH polypeptide sequence. A sequence (TATAAAA) matching the TATA box consensus sequence was located at nucleotide positions -30 to -23. Furthermore, 2 sequences corresponding to the mammalian Pit-1/GHF-1 binding sites (consensus sequence TT[AA]TATNCAT) were identified in the 5' flanking region starting at positions -113 and -134. Another sequence (GTACCAGTGA) conserved among the GH genes of the channel catfish and other known animal species was also identified at position -220. The biological functions of this sequence remain to be determined.(ABSTRACT TRUNCATED AT 250 WORDS)
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1119
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Tang Y, Norcia AM. Improved processing of the steady-state evoked potential. ELECTROENCEPHALOGRAPHY AND CLINICAL NEUROPHYSIOLOGY 1993; 88:323-34. [PMID: 7688287 DOI: 10.1016/0168-5597(93)90056-u] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Two related procedures for estimating the parameters of steady-state evoked potentials (SSEPs) are introduced. The first procedure involves an initial stage of digital bandpass filtering followed by a Discrete Fourier Transform analysis. In the second method, a high resolution method based on parametric modelling is applied to the filtered data. The digital pre-filter consists of a non-phase shifting Chebychev bandpass filter. The parametric modelling method considers the evoked-response-plus-noise distribution to consist of a set of exponentially damped sinusoids. The frequency, amplitude, phase and damping factors of these components are estimated by calculating the mean of the forward and backward prediction filters and linear regression. We compared the signal-to-noise ratio (SNR) of the new procedures to the conventional Discrete Fourier Transform method for Monte Carlo simulations utilizing known sinusoids buried in white noise, known sinusoids buried in human EEG noise and for a sample of visual evoked potential data. Both of the new methods produce substantially more accurate and less variable estimates of test sinusoid amplitude. For VEP recording, the EEG background noise level is reduced by 5-6 dB over that obtained with the DFT. The new methods also provide approximately 5 dB better SNR than the DFT for detection of sinusoids based on the Rayleigh statistic. The parametric modelling approach is particularly suited for the analysis of very short data records including cycle-by-cycle analysis of the SSEP.
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1120
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Luo Y, Lai L, Xu X, Tang Y. Defining topological equivalences in protein structures by means of a dynamic programming algorithm. PROTEIN ENGINEERING 1993; 6:373-6. [PMID: 8332594 DOI: 10.1093/protein/6.4.373] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
An automatic algorithm for defining topological equivalences in protein structures is presented. The algorithm is based on a dynamic programming technique and self-consistent scoring method. We have used it to align pairs of similar protein structures of several protein families and to identify recurrent structural domains in aspartic proteinase 2APR. Its ability to find suboptimal paths permits a thorough comparison of proteins at each level in the hierarchy of the protein structure: secondary structure, super-secondary structure, domain and entire globular structure. The algorithm has been extended to the structure alignment of ribonucleic acid and can be extended to the structure alignment of any linear polymer.
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1121
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Wu SX, Tang Y. Molecular epidemiologic study of an outbreak of Salmonella typhimurium infection at a newborn nursery. Chin Med J (Engl) 1993; 106:423-7. [PMID: 8222893] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023] Open
Abstract
Plasmid analysis, restriction endonuclease analysis, antimicrobial susceptibility testing, biotyping, phage typing and outer membrane protein electrophoresis were used to study an outbreak of Salmonella typhimurium infection at a newborn nursery. Seven out of the 12 neonates had positive blood cultures for S. typhimurium, and 2 of them died of severe sepsis. Thirty epidemic strains of S. typhimurium belonging to phage type 12 had the same plasmid profiles (98.0, 6.7 and 3.8 Kb) and identical restriction digest patterns (23.0, 20.4, 15.0, 9.6, 8.2, 7.4, 5.8, 4.3, 3.8, 2.0 and 1.8 Kb) which were different from those of the 2 non-epidemic strains. Laboratory data suggested that the source of the infection was the index patient's mother who had a slight diarrhea; the mode of transmission was most likely due to the transfer of organisms from infant to infant by the contaminated hands of nurses during milk feeding.
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1122
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Zou Z, Wang H, Chen D, Tang Y, Qiao X. [The applicability of a new stable fluorescence reagent CGE (N) for TLC measurements and spectrofluorimetry]. HUA XI YI KE DA XUE XUE BAO = JOURNAL OF WEST CHINA UNIVERSITY OF MEDICAL SCIENCES = HUAXI YIKE DAXUE XUEBAO 1993; 24:194-7. [PMID: 8244302] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
A new stable fluorescent reagent, CGE (N), was designed and synthesized in our laboratory. This paper presents the results of using it to detect a compound having aminogroup. Glycine as an example was derived by using CGE (N), the best condition of derivatisation reaction was pH8, T 50 +/- 1 degree C, and time 3-5 h. Spread agent was CHCl3: CH3OH:CH3COOC2H5: iceHAc (1:3:5:1). Rf of glycine-CGE (N) was 0.45, of which fluorescent spectrum Em was 356nm (at Ex = 277nm). The correlation coefficient between the fluorescent scanning area and quantity was over 0.99, the linear relation retained for 24 h, the detection limit 0.24 microgram, and the linear range 0.24-19.2 micrograms. The data revealed that stability, sensitivity and reproducibility were good. These indicate that CGE(N) is a fine fluorescent reagent for compounds having primary amino-group and this method is reliable.
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1123
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Tang Y, Reed SI. The Cdk-associated protein Cks1 functions both in G1 and G2 in Saccharomyces cerevisiae. Genes Dev 1993; 7:822-32. [PMID: 8491379 DOI: 10.1101/gad.7.5.822] [Citation(s) in RCA: 79] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
The CKS1 gene of Saccharomyces cerevisiae encodes a small essential protein shown to interact genetically and physically with the Cdc28 protein kinase. To investigate the specific functions of the CKS1 gene product, conditional temperature-sensitive mutant alleles were generated. The mutations were found to impair the ability of cells to undergo both the G1/S-phase and G2/M-phase transitions of the cell cycle, as well as the ability to bud. Mutants were not defective, however, in their ability to activate Cdc28 kinase as assayed in vitro on the substrate histone H1. It is likely, therefore, that Cks1 mediates a more specialized function of the Cdc28 kinase such as its ability to form specific multimeric complexes or to localize properly in cellular compartments.
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1124
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Killick-Kendrick R, Killick-Kendrick M, Tang Y, Sang DK, Johnson RN, Ngumbi PM. Phlebotomine sandflies of Kenya (Diptera: Psychodidae). I. The validity of Phlebotomus (Larroussius) elgonensis Ngoka, Madel and Mutinga. ANNALS OF TROPICAL MEDICINE AND PARASITOLOGY 1993; 87:207-15. [PMID: 8561529 DOI: 10.1080/00034983.1993.11812756] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
Sandflies collected in Kitum cave on the Kenyan side of Mount Elgon were identified as Phlebotomus (Larroussius) elgonensis Ngoka, Madel and Mutinga, a species synonymized with P. (L.) aculeatus Lewis, Minter and Ashford, by D. J. Lewis. A comparison of the flies from Kitum cave with P. aculeatus from Lake Elmentaita, Kenya, shows marked differences in the lengths of: (a) the spermathecal ducts of the female; (b) the style, coxite, genital pump and aedeagus of the male; and (c) the palpal segments of both sexes. Other notable differences are in the shape of the base of the spermathecal ducts; the position of spines on, and the shape of, the tip of the aedeagus; and the appearance of the pharyngeal armatures of both sexes. Phlebotomus elgonensis is redescribed and it is concluded that it is sufficiently different from P. aculeatus to deserve recognition as a valid species.
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Tang Y, Hügin AW, Hartley JW, Fredrickson TN, Morse HC, Chattopadhyay SK. Effects of immunization with the p12 proteins of LP-BM5 defective and ecotropic viruses on development of MAIDS. Arch Virol 1993; 129:155-66. [PMID: 8385912 DOI: 10.1007/bf01316892] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
Among murine leukemia viruses (MuLV) present in the LP-BM5 virus mixture, the agent etiologic for an acquired immunodeficiency syndrome (MAIDS) is replication defective, containing only a single open reading frame which includes all of gag. The Gag polyprotein encoded by the defective virus, termed BM5def, differs most in p12 from that of nonpathogenic ecotropic virus (BM5eco). As one approach to examining the role of p12 in disease, the ecotropic and defective virus forms of the protein, synthesized in bacteria, were used to immunize three strains of mice differing in their sensitivity to MAIDS. In each strain, both proteins elicited substantial antibody responses that were cross-reactive with either p12 and recognized the proteins as part of intact viral Gag polyproteins. Immunization with either p12 before infection with LP-BM5 viruses had no effect on the sensitivity or resistance of mice to MAIDS or on the extent of helper virus spread. The variant p12 of BM5def, when presented on its own, is thus not a crucial antigenic determinant of disease. Alternative mechanisms by which BM5def may contribute to MAIDS are discussed.
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