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101
Kwon T, Choi H, Vogel C, Nesvizhskii AI, Marcotte EM. MSblender: A probabilistic approach for integrating peptide identifications from multiple database search engines. J Proteome Res 2011;10:2949-58. [PMID: 21488652 DOI: 10.1021/pr2002116] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
102
Vogel C, Abreu RDS, Ko D, Le SY, Shapiro BA, Burns SC, Sandhu D, Boutz DR, Marcotte EM, Penalva LO. Sequence signatures and mRNA concentration can explain two-thirds of protein abundance variation in a human cell line. Mol Syst Biol 2011;6:400. [PMID: 20739923 PMCID: PMC2947365 DOI: 10.1038/msb.2010.59] [Citation(s) in RCA: 455] [Impact Index Per Article: 35.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2010] [Accepted: 06/29/2010] [Indexed: 11/23/2022]  Open
103
Laurent JM, Vogel C, Kwon T, Craig SA, Boutz DR, Huse HK, Nozue K, Walia H, Whiteley M, Ronald PC, Marcotte EM. Protein abundances are more conserved than mRNA abundances across diverse taxa. Proteomics 2011;10:4209-12. [PMID: 21089048 DOI: 10.1002/pmic.201000327] [Citation(s) in RCA: 104] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
104
Vielsmeier V, Kwok P, Jakob M, Vogel C, Strutz J, Huber M. [Tumour of the endolymphatic sac in a 12-year-old child]. HNO 2010;59:529-32. [PMID: 21181388 DOI: 10.1007/s00106-010-2228-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
105
Hartl J, Buettner R, Rockmann F, Farkas S, Holstege A, Vogel C, Schnitzbauer A, Schlitt HJ, Schoelmerich J, Kirchner G. Giant cell hepatitis: an unusual cause of fulminant liver failure. ZEITSCHRIFT FUR GASTROENTEROLOGIE 2010;48:1293-6. [PMID: 21043007 DOI: 10.1055/s-0029-1245476] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
106
Hartl J, Buettner R, Rockmann F, Farkas S, Holstege A, Vogel C, Schnitzbauer A, Schlitt HJ, Schölmerich J, Kirchner GI. Eine seltene Ursache für ein akutes Leberversagen. ZEITSCHRIFT FUR GASTROENTEROLOGIE 2010. [DOI: 10.1055/s-0030-1267662] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
107
Pillet H, Bonnet X, Vogel C, Logut L, Fode P, Skalli W, Lavaste F. Kinematic and kinetic analysis of asymptomatic subjects walking on a sloped surface. Comput Methods Biomech Biomed Engin 2010. [DOI: 10.1080/10255842.2010.494043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
108
Uçeyler N, Schütt M, Palm F, Vogel C, Meier M, Schmitt A, Lesch KP, Mössner R, Sommer C. Lack of the serotonin transporter in mice reduces locomotor activity and leads to gender-dependent late onset obesity. Int J Obes (Lond) 2010;34:701-11. [PMID: 20084070 DOI: 10.1038/ijo.2009.289] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
109
Beslija S, Bonneterre J, Burstein H, Cocquyt V, Gnant M, Heinemann V, Jassem J, Köstler W, Krainer M, Menard S, Petit T, Petruzelka L, Possinger K, Schmid P, Stadtmauer E, Stockler M, Van Belle S, Vogel C, Wilcken N, Wiltschke C, Zielinski C, Zwierzina H. Third consensus on medical treatment of metastatic breast cancer. Ann Oncol 2009;20:1771-85. [DOI: 10.1093/annonc/mdp261] [Citation(s) in RCA: 146] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]  Open
110
Airapetian A, Akopov N, Akopov Z, Aschenauer EC, Augustyniak W, Avetissian A, Avetisyan E, Bacchetta A, Ball B, Bianchi N, Blok HP, Böttcher H, Bonomo C, Borissov A, Bryzgalov V, Burns J, Capiluppi M, Capitani GP, Cisbani E, Ciullo G, Contalbrigo M, Dalpiaz PF, Deconinck W, De Leo R, De Nardo L, De Sanctis E, Diefenthaler M, Di Nezza P, Dreschler J, Düren M, Ehrenfried M, Elbakian G, Ellinghaus F, Elschenbroich U, Fabbri R, Fantoni A, Felawka L, Frullani S, Gabbert D, Gapienko G, Gapienko V, Garibaldi F, Gharibyan V, Giordano F, Gliske S, Hadjidakis C, Hartig M, Hasch D, Hill G, Hillenbrand A, Hoek M, Holler Y, Hristova I, Imazu Y, Ivanilov A, Jackson HE, Jo HS, Joosten S, Kaiser R, Keri T, Kinney E, Kisselev A, Korotkov V, Kozlov V, Kravchenko P, Lagamba L, Lamb R, Lapikás L, Lehmann I, Lenisa P, Linden-Levy LA, López Ruiz A, Lorenzon W, Lu XG, Lu XR, Ma BQ, Mahon D, Makins NCR, Manaenkov SI, Manfré L, Mao Y, Marianski B, Martinez de la Ossa A, Marukyan H, Miller CA, Miyachi Y, Movsisyan A, Murray M, Mussgiller A, Nappi E, Naryshkin Y, Nass A, Negodaev M, Nowak WD, Pappalardo LL, Perez-Benito R, Reimer PE, Reolon AR, Riedl C, Rith K, Rosner G, Rostomyan A, Rubin J, Ryckbosch D, Salomatin Y, Sanftl F, Schäfer A, Schnell G, Schüler KP, Seitz B, Shibata TA, Shutov V, Stancari M, Statera M, Steijger JJM, Stenzel H, Stewart J, Stinzing F, Taroian S, Terkulov A, Trzcinski A, Tytgat M, Vandenbroucke A, van der Nat PB, Van Haarlem Y, Van Hulse C, Varanda M, Veretennikov D, Vikhrov V, Vilardi I, Vogel C, Wang S, Yaschenko S, Ye H, Ye Z, Yen S, Yu W, Zeiler D, Zihlmann B, Zupranski P. Observation of the naive-T-odd Sivers effect in deep-inelastic scattering. PHYSICAL REVIEW LETTERS 2009;103:152002. [PMID: 19905623 DOI: 10.1103/physrevlett.103.152002] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2009] [Indexed: 05/28/2023]
111
de Sousa Abreu R, Penalva LO, Marcotte EM, Vogel C. Global signatures of protein and mRNA expression levels. MOLECULAR BIOSYSTEMS 2009;5:1512-26. [PMID: 20023718 DOI: 10.1039/b908315d] [Citation(s) in RCA: 578] [Impact Index Per Article: 38.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
112
Galante PAF, Sandhu D, de Sousa Abreu R, Gradassi M, Slager N, Vogel C, de Souza SJ, Penalva LOF. A comprehensive in silico expression analysis of RNA binding proteins in normal and tumor tissue: Identification of potential players in tumor formation. RNA Biol 2009;6:426-33. [PMID: 19458496 DOI: 10.4161/rna.6.4.8841] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]  Open
113
Ramakrishnan SR, Vogel C, Kwon T, Penalva LO, Marcotte EM, Miranker DP. Mining gene functional networks to improve mass-spectrometry-based protein identification. ACTA ACUST UNITED AC 2009;25:2955-61. [PMID: 19633097 PMCID: PMC2773251 DOI: 10.1093/bioinformatics/btp461] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
114
Ramakrishnan SR, Vogel C, Prince JT, Li Z, Penalva LO, Myers M, Marcotte EM, Miranker DP, Wang R. Integrating shotgun proteomics and mRNA expression data to improve protein identification. Bioinformatics 2009;25:1397-403. [PMID: 19318424 PMCID: PMC2682515 DOI: 10.1093/bioinformatics/btp168] [Citation(s) in RCA: 56] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2008] [Revised: 02/19/2009] [Accepted: 03/18/2009] [Indexed: 01/24/2023]  Open
115
Landgraf H, Ehrly A, Saeger-Lorenz K, Vogel C. Untersuchung über den Einfluß einer Infusion von mittelmolekularer Hydroxyäthylstärke (HAES-steril® 10%) auf die Fließeigenschaften des Blutes gesunder Probanden. Transfus Med Hemother 2009. [DOI: 10.1159/000221214] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]  Open
116
de Sousa Abreu R, Sanchez-Diaz PC, Vogel C, Burns SC, Ko D, Burton TL, Vo DT, Chennasamudaram S, Le SY, Shapiro BA, Penalva LOF. Genomic analyses of musashi1 downstream targets show a strong association with cancer-related processes. J Biol Chem 2009;284:12125-35. [PMID: 19258308 DOI: 10.1074/jbc.m809605200] [Citation(s) in RCA: 72] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]  Open
117
Hannay K, Marcotte EM, Vogel C. Buffering by gene duplicates: an analysis of molecular correlates and evolutionary conservation. BMC Genomics 2008;9:609. [PMID: 19087332 PMCID: PMC2627895 DOI: 10.1186/1471-2164-9-609] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2008] [Accepted: 12/16/2008] [Indexed: 12/11/2022]  Open
118
Braisted JC, Kuntumalla S, Vogel C, Marcotte EM, Rodrigues AR, Wang R, Huang ST, Ferlanti ES, Saeed AI, Fleischmann RD, Peterson SN, Pieper R. The APEX Quantitative Proteomics Tool: generating protein quantitation estimates from LC-MS/MS proteomics results. BMC Bioinformatics 2008;9:529. [PMID: 19068132 PMCID: PMC2639435 DOI: 10.1186/1471-2105-9-529] [Citation(s) in RCA: 131] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2008] [Accepted: 12/09/2008] [Indexed: 11/17/2022]  Open
119
Vogel C, Marcotte EM. Calculating absolute and relative protein abundance from mass spectrometry-based protein expression data. Nat Protoc 2008;3:1444-51. [PMID: 18772871 DOI: 10.1038/nport.2008.132] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
120
Wilson D, Pethica R, Zhou Y, Talbot C, Vogel C, Madera M, Chothia C, Gough J. SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny. Nucleic Acids Res 2008;37:D380-6. [PMID: 19036790 PMCID: PMC2686452 DOI: 10.1093/nar/gkn762] [Citation(s) in RCA: 330] [Impact Index Per Article: 20.6] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]  Open
121
Teichmann LL, Woenckhaus M, Vogel C, Salzberger B, Schölmerich J, Fleck M. Fatal Pneumocystis pneumonia following rituximab administration for rheumatoid arthritis. Rheumatology (Oxford) 2008;47:1256-7. [PMID: 18567919 DOI: 10.1093/rheumatology/ken234] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
122
Vogel C, Pohlentz G. Synthesis of α-D-Glucopyranosyl-(1-3)-α-D-Mannopyranosyl-(1-7)-4-Methylumbelliferone, A Fluorogenic Substrate for Endo-α-1,2-Mannosidase. J Carbohydr Chem 2008. [DOI: 10.1080/07328300008544148] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
123
Rangan L, Vogel C, Srivastava A. Analysis of context sequence surrounding translation initiation site from complete genome of model plants. Mol Biotechnol 2008;39:207-13. [PMID: 18236175 DOI: 10.1007/s12033-008-9036-9] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2007] [Accepted: 01/09/2008] [Indexed: 11/28/2022]
124
Jakisch BI, Wagner VM, Heidtmann B, Lepler R, Holterhus PM, Kapellen TM, Vogel C, Rosenbauer J, Holl RW. Comparison of continuous subcutaneous insulin infusion (CSII) and multiple daily injections (MDI) in paediatric Type 1 diabetes: a multicentre matched-pair cohort analysis over 3 years. Diabet Med 2008;25:80-5. [PMID: 18199134 DOI: 10.1111/j.1464-5491.2007.02311.x] [Citation(s) in RCA: 94] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
125
Meier-Haack J, Komber H, Vogel C, Butwilowski W, Schlenstedt K, Lehmann D. Side-Chain Sulfonated Poly(arylene ether)s for Fuel Cell Applications. ACTA ACUST UNITED AC 2007. [DOI: 10.1002/masy.200750847] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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